View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17364_low_18 (Length: 286)
Name: NF17364_low_18
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17364_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 12105223 - 12104956
Alignment:
| Q |
4 |
tatggaatataggaaggtaacaacctcgataagaccactacattatttaaaaaagtgtattaaaaaataaacaacagacattattgattttcaatggcat |
103 |
Q |
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| T |
12105223 |
tatggaatgtaggaagtttgcaacctcgataagaccactacattatttaaaaaagagtattaaaaaataaacaacagacattattgattttcaatggcgt |
12105124 |
T |
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| Q |
104 |
gaatgcatataataatcacaaatacctcgtgtagttttatccgtagaaactccgtgttcgaaactgtttccatcggaatatagaaatcacaatctataat |
203 |
Q |
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| T |
12105123 |
gaatgcatataataatcacaaatacctcgtgtagttttatccgtagaaactccgcgttcgaaactgtttccatcggaatatagaaatcacaatccataat |
12105024 |
T |
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| Q |
204 |
atctgctcttttcaactttgttaaggtttgagcccattgtatggaacaataagtgttataggttatat |
271 |
Q |
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| T |
12105023 |
atctgctcttttcaactttgttaaggtttgagcccattgtatggaacaataagtgttataggttatat |
12104956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 12094622 - 12094469
Alignment:
| Q |
24 |
caacctcgataagaccactacattatttaaaaaagtg--tattaaaaaataaacaacagacattattgattttcaatggcatgaatgcatataa---taa |
118 |
Q |
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| T |
12094622 |
caacctcgataa---cactacattatttaaaaaagagagtattaaaaa-taaataacccacattattgattttcaatggcatgaatgcatataatattaa |
12094527 |
T |
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| Q |
119 |
tcacaaatacctcgtgtagttttatccgtagaaactccgtgttcgaaactgtttccat |
176 |
Q |
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| T |
12094526 |
tcacacataccttgtgtagttttatccgtacaaactccgcatttgaaactgtttccat |
12094469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 1446157 - 1446254
Alignment:
| Q |
135 |
tagttttatccgtagaaactccgtgttcgaaactgtttccatcggaatatagaaatcacaatctataatatctgctcttttcaactttgttaaggttt |
232 |
Q |
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| T |
1446157 |
tagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactttgttaaggttt |
1446254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 1459624 - 1459657
Alignment:
| Q |
199 |
ataatatctgctcttttcaactttgttaaggttt |
232 |
Q |
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| T |
1459624 |
ataatatctgctctattcaactttgttaaggttt |
1459657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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