View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17364_low_26 (Length: 214)

Name: NF17364_low_26
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17364_low_26
NF17364_low_26
[»] chr7 (5 HSPs)
chr7 (25-214)||(33078192-33078385)
chr7 (25-214)||(30567100-30567287)
chr7 (21-214)||(37888323-37888515)
chr7 (166-212)||(38352104-38352150)
chr7 (152-212)||(39770215-39770275)
[»] chr3 (8 HSPs)
chr3 (27-214)||(15007682-15007868)
chr3 (22-173)||(7008730-7008879)
chr3 (28-97)||(43476056-43476125)
chr3 (170-214)||(43475907-43475951)
chr3 (23-173)||(55027403-55027553)
chr3 (166-214)||(7008604-7008652)
chr3 (166-214)||(38571683-38571731)
chr3 (166-214)||(55027251-55027299)
[»] chr5 (4 HSPs)
chr5 (20-214)||(36571785-36571979)
chr5 (166-214)||(30644577-30644625)
chr5 (166-212)||(4938575-4938621)
chr5 (176-214)||(27405732-27405770)
[»] chr6 (3 HSPs)
chr6 (23-214)||(30446751-30446930)
chr6 (176-214)||(8222600-8222638)
chr6 (22-76)||(12513770-12513824)
[»] chr1 (7 HSPs)
chr1 (25-166)||(10265253-10265393)
chr1 (29-96)||(36231639-36231706)
chr1 (23-96)||(8471914-8471987)
chr1 (166-214)||(10265505-10265553)
chr1 (166-214)||(43739517-43739565)
chr1 (166-214)||(36231410-36231458)
chr1 (166-214)||(8471702-8471750)
[»] chr4 (12 HSPs)
chr4 (23-165)||(7695306-7695446)
chr4 (33-158)||(31335852-31335977)
chr4 (23-96)||(28901832-28901905)
chr4 (25-173)||(56054888-56055033)
chr4 (166-214)||(31336071-31336119)
chr4 (169-214)||(56054736-56054781)
chr4 (64-172)||(23538996-23539101)
chr4 (166-214)||(23539206-23539254)
chr4 (166-214)||(48506129-48506177)
chr4 (23-173)||(48505875-48506025)
chr4 (176-214)||(28901603-28901641)
chr4 (25-53)||(23538978-23539006)
[»] chr2 (3 HSPs)
chr2 (23-173)||(9118466-9118616)
chr2 (166-214)||(9118314-9118362)
chr2 (108-173)||(1072426-1072492)
[»] chr8 (4 HSPs)
chr8 (108-173)||(12271824-12271890)
chr8 (166-214)||(13497758-13497806)
chr8 (166-212)||(23550238-23550284)
chr8 (29-93)||(13497989-13498053)
[»] scaffold1905 (1 HSPs)
scaffold1905 (166-212)||(967-1013)


Alignment Details
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 33078192 - 33078385
Alignment:
Q  25 agaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnn---tgatgtggagatga 121  Q
    |||||||||||||||  |||||||||||||| || ||||||||||||||||||||| |||||||||||||||||            |||||||||| |||    
T  33078192 agaccaagtgcaatgagttgttgaaaccaaccttcaacatgttgaaaccattgcatgtgggtgttgaaaatggaaaaaaaaaaatatgatgtggaggtga 33078291  T
Q  122 gagtagatgaatgaattcaacatgttgacttctgacgtggggggc-acgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  33078292 gagtagatgaatgaattcaacatgttgaattctgacgcggggggcaacgtggctggtttcgattgactgcttgaatttttatcatcttaatatt 33078385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 30567287 - 30567100
Alignment:
Q  25 agaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagatgagag 124  Q
    |||||||||||||||| |||||||||||||  || ||||| ||||||||||||||| || |||||||||||||          |||||||||| ||||||    
T  30567287 agaccaagtgcaatggcttgttgaaaccaagcttcaacatattgaaaccattgcatgtgagtgttgaaaatgg--taaaaatatgatgtggaggtgagag 30567190  T
Q  125 tagatgaatgaattcaacatgttgacttctgacgtggggggcacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||||| ||||| |||||||||| |||||||| ||||| |||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  30567189 tagatgaaagaattaaacatgttgaattctgacgcgggggccacgtggctggtttcgattggctgtttggatttttatcatcttaatatt 30567100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 37888515 - 37888323
Alignment:
Q  21 tctaagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagatg 120  Q
    |||||||||||||||||| | |||||||||||||  || |||||||||||| |||||||| || |||||||||||||          ||||||| || ||    
T  37888515 tctaagaccaagtgcaatagcttgttgaaaccaagcttcaacatgttgaaagcattgcatgtgagtgttgaaaatgg--taaaaaaatgatgtgaaggtg 37888418  T
Q  121 agagtagatgaatgaattcaacatgttgacttctgacgtgggggg-cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||||||||||||||| |||| ||||| || ||||| ||| || |||||||||||||||  |||||||||| |||||||||||||||||||||    
T  37888417 agagtagatgaatgaattaaacaagttgaattatgacgcgggtggacacgtggctggtttctattggctgcttaaatttttatcatcttaatatt 37888323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 38352150 - 38352104
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaata 212  Q
    ||||||||| ||| || ||||||||||||||||||||| ||||||||    
T  38352150 cacgtggcttgttacgattggctgcttgaatttttatcttcttaata 38352104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 39770275 - 39770215
Alignment:
Q  152 tctgacgtggggggcacgtggctggtttcggttggctgcttgaatttttatcatcttaata 212  Q
    |||||||  |||| ||||||||| ||| || ||||||||||| ||||||||| ||||||||    
T  39770275 tctgacgcaggggacacgtggcttgttacgattggctgcttggatttttatcttcttaata 39770215  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 15007868 - 15007682
Alignment:
Q  27 accaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagatgagagta 126  Q
    |||||||||||| | |||| ||||||||| || ||||||||||||||||||||| |||||||||||||||||         | |||||||| ||||||||    
T  15007868 accaagtgcaataggttgtcgaaaccaaccttcaacatgttgaaaccattgcatgtgggtgttgaaaatgga--aaaaaaataatgtggaggtgagagta 15007771  T
Q  127 gatgaatgaattcaacatgttgacttctgacgt-ggggggcacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    ||||||||||||||||||||||| ||||||||| || |  || ||||||||||||| |||||||||| |||||||||||||| ||||||    
T  15007770 gatgaatgaattcaacatgttgaattctgacgtaggagcccaagtggctggtttcgattggctgcttcaatttttatcatctaaatatt 15007682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 7008879 - 7008730
Alignment:
Q  22 ctaagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagatga 121  Q
    ||||||||||||||||||| |||||||||||||  || |||||||||||||||||| || |||||||||||||||  |        |||||||||| |||    
T  7008879 ctaagaccaagtgcaatggcttgttgaaaccaagcttcaacatgttgaaaccattgtatgtgggtgttgaaaatg--gtaaaaaaatgatgtggaggtga 7008782  T
Q  122 gagtagatgaatgaattcaacatgttgacttctgacgtggggggcacgtggc 173  Q
    ||| | ||||| ||||| || ||||||| |||||||| | ||| ||||||||    
T  7008781 gagcatatgaaagaattaaatatgttgaattctgacgcgagggccacgtggc 7008730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 43476125 - 43476056
Alignment:
Q  28 ccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatgg 97  Q
    ||||||||||||| |||||||||||||  || ||||||| ||||||||||||| ||||||||||||||||    
T  43476125 ccaagtgcaatgggttgttgaaaccaagcttcaacatgtagaaaccattgcatgtgggtgttgaaaatgg 43476056  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 43475951 - 43475907
Alignment:
Q  170 tggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||    
T  43475951 tggctggtttcgattggctgcttggatttttatcatcttaatatt 43475907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 55027553 - 55027403
Alignment:
Q  23 taagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctggg-tgttgaaaatggagnnnnnnnntgatgtggagatga 121  Q
    |||||| | |||||||||  ||||||| ||||| || ||||||||||| ||||||||   ||| |||||||||||| |        |||||||||| |||    
T  55027553 taagactatgtgcaatggggtgttgaatccaaccttcaacatgttgaatccattgcaagaggggtgttgaaaatgggggaaaaa--tgatgtggaggtga 55027456  T
Q  122 gagtagatgaatgaattcaacatgttgacttctgacgtgggggg-cacgtggc 173  Q
    ||||||||||||  ||| |||||||||| |||||||| |||||| ||||||||    
T  55027455 gagtagatgaatatattaaacatgttgaattctgacgcggggggacacgtggc 55027403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 7008652 - 7008604
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    ||||||||||| || | ||||||||||| ||||||||||||||||||||    
T  7008652 cacgtggctgggtttgattggctgcttggatttttatcatcttaatatt 7008604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 38571683 - 38571731
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    ||||||||  |||||| ||||||||||| ||||||||||||||||||||    
T  38571683 cacgtggcgcgtttcgtttggctgcttggatttttatcatcttaatatt 38571731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 55027299 - 55027251
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||| ||| ||||| ||||||||||| ||||||||||||||||||||    
T  55027299 cacgtgtctgatttcgattggctgcttggatttttatcatcttaatatt 55027251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 36571785 - 36571979
Alignment:
Q  20 ctctaagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagat 119  Q
    ||||||||||||||||||||  || ||||||||||  || || | ||||||||||||| || ||||||||||||||||          |||||||||| |    
T  36571785 ctctaagaccaagtgcaatgacttattgaaaccaagcttcaatacgttgaaaccattgtatgtgggtgttgaaaatggt-aaaaaaaatgatgtggaggt 36571883  T
Q  120 gagagtagatgaatgaattcaacatgttgacttctgacgtggggggc-acgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
     |||||||||||| ||||| |||||||||| ||||||||  |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  36571884 aagagtagatgaaagaattaaacatgttgaattctgacgcagggggccacgtggctggtttcgattggctgcttggatttttatcatcttaatatt 36571979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 30644577 - 30644625
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    ||||||||  |||||| ||||||| ||||||||||||||||||||||||    
T  30644577 cacgtggcgtgtttcgattggctggttgaatttttatcatcttaatatt 30644625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 4938621 - 4938575
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaata 212  Q
    ||||||||  |||||| |||||||||| |||||||||||||||||||    
T  4938621 cacgtggcgcgtttcgattggctgcttaaatttttatcatcttaata 4938575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 27405732 - 27405770
Alignment:
Q  176 gtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  27405732 gtttcgtttggctgcttggatttttatcatcttaatatt 27405770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 30446930 - 30446751
Alignment:
Q  23 taagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagatgag 122  Q
    |||||||||||||||||| |||||||||||||  || |||||||||||| |||||||| |||||||||||||||  |        |||||||||| ||||    
T  30446930 taagaccaagtgcaatggcttgttgaaaccaagcttcaacatgttgaaatcattgcatgtgggtgttgaaaatg--gtaaaaaaatgatgtggaggtgag 30446833  T
Q  123 agtagatgaatgaattcaacatgttgacttctgacgtggggggcacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||||||| ||||| |||||||||| |||||||| |          ||||||||||| ||||||||||||||||||||||||||||||||    
T  30446832 agtagatgaaagaattaaacatgttgaattctgacgcg----------ggctggtttcgattggctgcttgaatttttatcatcttaatatt 30446751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 8222638 - 8222600
Alignment:
Q  176 gtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  8222638 gtttcgattggctgcttgaatttttatcatcttaatatt 8222600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 12513824 - 12513770
Alignment:
Q  22 ctaagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccatt 76  Q
    ||||||||||||||||||| |||||||| ||||  || ||||||||| |||||||    
T  12513824 ctaagaccaagtgcaatgggttgttgaatccaagcttcaacatgttgcaaccatt 12513770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 10265253 - 10265393
Alignment:
Q  25 agaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagatgagag 124  Q
    |||||||||||||||| |||||||||||||  || ||||||||||||||||||||| | |||||||||||||||         ||||| |||| ||||||    
T  10265253 agaccaagtgcaatgggttgttgaaaccaagcttcaacatgttgaaaccattgcatgttggtgttgaaaatgga-aaaaaaaatgatgcggaggtgagag 10265351  T
Q  125 tagatgaatgaattcaacatgttgacttctgacgtggggggc 166  Q
    |||||||| ||||| |||||||||| |||||||| |||||||    
T  10265352 tagatgaaagaattaaacatgttgaattctgacgcggggggc 10265393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 36231706 - 36231639
Alignment:
Q  29 caagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatg 96  Q
    |||||||||||| |||||||||||||  || ||||||||||||||||||||| |||||||||||||||    
T  36231706 caagtgcaatgggttgttgaaaccaagtttcaacatgttgaaaccattgcatgtgggtgttgaaaatg 36231639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 8471987 - 8471914
Alignment:
Q  23 taagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatg 96  Q
    |||||||||||||||||| | |||||||||||  || ||||||||||||||||| ||| || ||||||||||||    
T  8471987 taagaccaagtgcaatgggtagttgaaaccaagcttcaacatgttgaaaccattacatgtgtgtgttgaaaatg 8471914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 10265505 - 10265553
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  10265505 cacgtggctggtttcgattggctgcttggatttttatcatcttaatatt 10265553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 43739565 - 43739517
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  43739565 cacgtggcgcgtttcgattggctgcttgaatttttatcatcttaatatt 43739517  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 36231458 - 36231410
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    ||||||||  |||||| ||||||||||| ||||||||||||||||||||    
T  36231458 cacgtggcgcgtttcgattggctgcttggatttttatcatcttaatatt 36231410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 8471750 - 8471702
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    ||||||||  |||||| ||| ||| ||||||||||||||||||||||||    
T  8471750 cacgtggcgcgtttcgattgactgtttgaatttttatcatcttaatatt 8471702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 7695306 - 7695446
Alignment:
Q  23 taagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagatgag 122  Q
    ||||||||||||||| || |||||||| ||||| || ||||||||||||| ||||||| |||||||||||| ||||         |||||||||| ||||    
T  7695306 taagaccaagtgcaaggg-ttgttgaatccaaccttcaacatgttgaaacaattgcatgtgggtgttgaaagtgga-aaaaagaatgatgtggaggtgag 7695403  T
Q  123 agtagatgaatgaattcaacatgttgacttctgacgtgggggg 165  Q
    |||||||||| ||||| |||||||||| |||||||| ||||||    
T  7695404 agtagatgaaagaattaaacatgttgaattctgacgcgggggg 7695446  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 31335852 - 31335977
Alignment:
Q  33 tgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagatgagagtagatgaa 132  Q
    |||||||| ||||||||||||   || || |||||||||||||||||| |||||||||||||||||         | |||||||| ||||||||||||||    
T  31335852 tgcaatgggttgttgaaaccatgcttcaaaatgttgaaaccattgcatgtgggtgttgaaaatggaaaaaaaaaataatgtggaggtgagagtagatgaa 31335951  T
Q  133 tgaattcaacatgttgacttctgacg 158  Q
     ||||| |||||||||| ||||||||    
T  31335952 agaattaaacatgttgaattctgacg 31335977  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 28901905 - 28901832
Alignment:
Q  23 taagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatg 96  Q
    |||||||||||||||||| | ||||||||||   || ||||||||||||||||||||| |||||||||||||||    
T  28901905 taagaccaagtgcaatgggtagttgaaaccacgcttcaacatgttgaaaccattgcatgtgggtgttgaaaatg 28901832  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 56055033 - 56054888
Alignment:
Q  25 agaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagatgagag 124  Q
    |||||| ||||||||| |||||||||||||  || | ||||||||||| ||||||| |||   ||||||||| |         ||||| |||| ||||||    
T  56055033 agaccatgtgcaatgggttgttgaaaccaagcttcagcatgttgaaactattgcatgtgg---ttgaaaatgaaaaaaaaaaatgatgcggaggtgagag 56054937  T
Q  125 tagatgaatgaattcaacatgttgacttctgacgtggggggcacgtggc 173  Q
    |||||||| ||||| |||||||||| |||||||||||||| || |||||    
T  56054936 tagatgaaagaattaaacatgttgaattctgacgtgggggccatgtggc 56054888  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 31336071 - 31336119
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  31336071 cacgtggctggtttcgattggctgcttgaatttttatcattttaatatt 31336119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 56054781 - 56054736
Alignment:
Q  169 gtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  56054781 gtggctgatttcgattggctgcttggatttttatcatcttaatatt 56054736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 23538996 - 23539101
Alignment:
Q  64 tgttgaaaccattgcatctgggtgttgaaaatggagnnnnnnnntgatgtggagatgagagtagatgaatgaattcaacatgttgacttctgacgtgggg 163  Q
    ||||||||||||||||| ||||||||||||||| |         ||||| |||| |||||||| | ||| ||||| |||||||||| |||||||| ||||    
T  23538996 tgttgaaaccattgcatgtgggtgttgaaaatgaa---aaaaaatgatgcggaggtgagagtacaagaaagaattaaacatgttgaattctgacgcgggg 23539092  T
Q  164 ggcacgtgg 172  Q
    | |||||||    
T  23539093 gccacgtgg 23539101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 23539206 - 23539254
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||||||||||||  ||||||||||  ||||||||||||||||||||    
T  23539206 cacgtggctggtttcaattggctgcttagatttttatcatcttaatatt 23539254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 48506129 - 48506177
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||| ||| ||||| ||||||||||| ||||||||||||||||||||    
T  48506129 cacgtgtctgatttcgattggctgcttggatttttatcatcttaatatt 48506177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 48505875 - 48506025
Alignment:
Q  23 taagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctggg-tgttgaaaatggagnnnnnnnntgatgtggagatga 121  Q
    |||||| | |||||||||  ||||||| ||||| || ||||||||||| ||||||||   ||| |||||||||||| |        |||||||||| |||    
T  48505875 taagactatgtgcaatggggtgttgaatccaaccttcaacatgttgaatccattgcaagaggggtgttgaaaatgggggaaaaa--tgatgtggaggtga 48505972  T
Q  122 gagtagatgaatgaattcaacatgttgacttctgacgtgggggg-cacgtggc 173  Q
    ||||||||||||  ||| ||||| |||| |||||||| |||||| ||||||||    
T  48505973 gagtagatgaatatattaaacattttgaattctgacgcggggggacacgtggc 48506025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 28901641 - 28901603
Alignment:
Q  176 gtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  28901641 gtttcgattggctgcttggatttttatcatcttaatatt 28901603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 23538978 - 23539006
Alignment:
Q  25 agaccaagtgcaatggattgttgaaacca 53  Q
    |||||||||||||||||||||||||||||    
T  23538978 agaccaagtgcaatggattgttgaaacca 23539006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 9118616 - 9118466
Alignment:
Q  23 taagaccaagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctggg-tgttgaaaatggagnnnnnnnntgatgtggagatga 121  Q
    |||||| | |||||||||  ||||||| ||||| || ||||||||||| ||||||||   ||| |||||||||||| |        |||||||||| |||    
T  9118616 taagactatgtgcaatggggtgttgaatccaaccttcaacatgttgaatccattgcaagaggggtgttgaaaatgggggaaaaa--tgatgtggaggtga 9118519  T
Q  122 gagtagatgaatgaattcaacatgttgacttctgacgtgggggg-cacgtggc 173  Q
    ||||||||||||  ||| |||||||||| |||||||| |||||| ||||||||    
T  9118518 gagtagatgaatatattaaacatgttgaattctgacgcggggggacacgtggc 9118466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 9118362 - 9118314
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    |||||| ||| ||||| ||||||||||| ||||||||||||||||||||    
T  9118362 cacgtgtctgatttcgattggctgcttggatttttatcatcttaatatt 9118314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 1072426 - 1072492
Alignment:
Q  108 tgatgtggagatgagagtagatgaatgaattcaacatgttgacttctgacgtgggggg-cacgtggc 173  Q
    |||||| ||| |||||||||||||||  ||| |||||||||| |||||||| |||||| ||||||||    
T  1072426 tgatgtagaggtgagagtagatgaatatattaaacatgttgaattctgacgcggggggacacgtggc 1072492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 12271824 - 12271890
Alignment:
Q  108 tgatgtggagatgagagtagatgaatgaattcaacatgttgacttctgacgtgggggg-cacgtggc 173  Q
    |||||||||| |||||||||||||||  ||| |||||||||| |||||||| |||||| ||||||||    
T  12271824 tgatgtggaggtgagagtagatgaatatattaaacatgttgaattctgacgcggggggacacgtggc 12271890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 13497806 - 13497758
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaatatt 214  Q
    ||||||||  |||||| ||||||||||| ||||||||||||||||||||    
T  13497806 cacgtggcgcgtttcgattggctgcttggatttttatcatcttaatatt 13497758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 23550284 - 23550238
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaata 212  Q
    ||||||||| ||| || ||||||||||||||||||||| ||||||||    
T  23550284 cacgtggcttgttacgattggctgcttgaatttttatcttcttaata 23550238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 13498053 - 13497989
Alignment:
Q  29 caagtgcaatggattgttgaaaccaacatttaacatgttgaaaccattgcatctgggtgttgaaa 93  Q
    |||||||||||| ||||||||  |||  || |||||||||||||||||| |  ||||||||||||    
T  13498053 caagtgcaatgggttgttgaatgcaagtttaaacatgttgaaaccattggagatgggtgttgaaa 13497989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1905 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1905
Description:

Target: scaffold1905; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 967 - 1013
Alignment:
Q  166 cacgtggctggtttcggttggctgcttgaatttttatcatcttaata 212  Q
    ||||||||| ||| || ||||||||||||||||||||| ||||||||    
T  967 cacgtggcttgttacgattggctgcttgaatttttatcttcttaata 1013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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