View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17364_low_4 (Length: 450)
Name: NF17364_low_4
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17364_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 6854501 - 6854131
Alignment:
| Q |
19 |
tgataagtgtaaacagaaaaaggttatgtctgcttggtgtaaaatgtg-tttcttgatgcagaagttaggtgtttaaacaaaattctttgagctagattg |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6854501 |
tgataagtgtaaacaaaaaaaggttatgtctgcttggtgtaaaatgtggtttcttgatgcagaagttaggtgtttaaacaaaattctttgagctagattg |
6854402 |
T |
|
| Q |
118 |
aggccatagattgctttatacaatttgcacactagagatttatcttttaatccaaagcctaggaactaggatgttacatatattctagttcctcaggcac |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6854401 |
aggccataaattgctttatacaatttgcacactagagatttatcttttaatccaaagcctaggaactaggatgttacatatattctagttcctcaggcac |
6854302 |
T |
|
| Q |
218 |
actactgagcattagaataaactaatccttaggaaacaatcaaagatatttcaagattagaaactattcttattagataagctatgataacgtcaagata |
317 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6854301 |
actactgggcattagaataaactaatccttaggaaacaatcaaagatatttcaagattagaaactattcttattagataagctatgataacgtcaagata |
6854202 |
T |
|
| Q |
318 |
ttctaatatactttcttatactattcaacaattatgtctatcacctttatgcatttttatttggtattgat |
388 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6854201 |
ttctaatatactttcttataccattcaacaattatttctatcacctttatgcatttttatttggtattgat |
6854131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 6824196 - 6824252
Alignment:
| Q |
122 |
catagattgctttatacaatttgcacactagagatttatcttttaatccaaagccta |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6824196 |
catagattgctttatacaatttgcacactagagatttatcttctaatccaaagccta |
6824252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University