View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17364_low_5 (Length: 448)
Name: NF17364_low_5
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17364_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 79 - 430
Target Start/End: Original strand, 32216311 - 32216662
Alignment:
| Q |
79 |
caatatgtgcgtcacatagagtataatgcacctcgtgcgtgagttttcgtaataagatcttgcatttcatttctttggttcttcaaggagaataaaccat |
178 |
Q |
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| T |
32216311 |
caatatgtgcgtcacatagagtataatgcacctcgtgcgtgagttttcgtaaaaagatcttgcatttcatttctttggttcttcaaggagaataaacctt |
32216410 |
T |
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| Q |
179 |
tgaattgcctttggaatttgagatagaattacctcaagtaatatggacttcatttcgtcaatgtatttagtctctacctctgtaacatccacatatcatt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32216411 |
tgaattgcctttggaatttgagatagaattacctcaagtagtctggacttcatttcgtcaatgtatttagtctctacctctgtaacatccacatatcatt |
32216510 |
T |
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| Q |
279 |
tggaatgacatggacggaccatactaagtgacttataatagttggcttgaccgactagtaagactgttcaagtcatgcaagctcagttagtcctcactca |
378 |
Q |
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| T |
32216511 |
tggaatggcatggacggaccatactacgtgacttataatagttggcttgaccgactagtaagaatgttcaagtcatgcaagctcagttagtcctcactca |
32216610 |
T |
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| Q |
379 |
acactgatttggttgttcaagtcatactagtctgttcctcttcactcaacac |
430 |
Q |
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| T |
32216611 |
acatttgtttggttgttcaattcatactagtatgttcctcttcactcaacac |
32216662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 101 - 341
Target Start/End: Original strand, 32225604 - 32225844
Alignment:
| Q |
101 |
ataatgcacctcgtgcgtgagttttcgtaataagatcttgcatttcatttctttggttcttcaaggagaataaaccattgaattgcctttggaatttgag |
200 |
Q |
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| T |
32225604 |
ataatgcacctcgtgcgttagttttcgtaaaaagatcttgcatttcatttatttggttcttcaaggagaataaacttttgacttgcctttggaatttgag |
32225703 |
T |
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| Q |
201 |
atagaattacctcaagtaatatggacttcatttcgtcaatgtatttagtctctacctctgtaacatccacatatcatttggaatgacatggacggaccat |
300 |
Q |
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| T |
32225704 |
atagaattacctcaagtagtctggacttcatttcgtcaatgtatttagtctctacttctgtaacatccacatagcatttggaatggcatggacggatcat |
32225803 |
T |
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| Q |
301 |
actaagtgacttataatagttggcttgaccgactagtaaga |
341 |
Q |
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| T |
32225804 |
actatgtgacttataatagttggcttgaccgactagtaaga |
32225844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32213618 - 32213703
Alignment:
| Q |
1 |
cagttcttgattggttgatgtgtgcatcgcgcaagctggtactcgtgtctaccaaaagtagaaacctttttgatggtgcaatatgt |
86 |
Q |
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| T |
32213618 |
cagttcttgattggttgatgtgtgcatcgcgcatgctggtacgcgtgtctaccaaaagtagaaacctttttgatggtgcaatatgt |
32213703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 32225867 - 32225927
Alignment:
| Q |
343 |
tgttcaagtcatgcaagctcagttagtcctcactcaacactgatttggttgttcaagtcat |
403 |
Q |
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| T |
32225867 |
tgtttaagttatgcaagctcagttagtcctcactcaacactagtttgactgttcaagtcat |
32225927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 32225913 - 32225973
Alignment:
| Q |
340 |
gactgttcaagtcatgcaagctcagttagtcctcactcaacactgatttggttgttcaagt |
400 |
Q |
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| T |
32225913 |
gactgttcaagtcatgtcagttcagttcgtcctcactcaacactgatttgactgttcaagt |
32225973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 24634161 - 24634103
Alignment:
| Q |
345 |
ttcaagtcatgcaagctcagttagtcctcactcaacactgatttggttgttcaagtcat |
403 |
Q |
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||||| |||||| ||||||||| ||||||||||||||||| |||| |||||| ||||| |
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| T |
24634161 |
ttcaattcatgccagctcagttggtcctcactcaacactggtttgactgttcaggtcat |
24634103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 22876029 - 22876075
Alignment:
| Q |
287 |
catggacggaccatactaagtgacttataatagttggcttgaccgac |
333 |
Q |
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| T |
22876029 |
catggacggaccataccatgtgacttgtaatagttgacttgaccgac |
22876075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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