View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17364_low_8 (Length: 420)

Name: NF17364_low_8
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17364_low_8
NF17364_low_8
[»] chr2 (4 HSPs)
chr2 (186-404)||(32212723-32212941)
chr2 (1-169)||(32213474-32213642)
chr2 (316-358)||(18962127-18962169)
chr2 (318-358)||(5045248-5045288)
[»] chr4 (4 HSPs)
chr4 (93-150)||(25228235-25228291)
chr4 (318-361)||(21193934-21193977)
chr4 (316-347)||(30770833-30770864)
chr4 (318-358)||(8422928-8422968)
[»] chr8 (2 HSPs)
chr8 (316-358)||(4558737-4558779)
chr8 (318-347)||(31315544-31315573)
[»] chr1 (4 HSPs)
chr1 (64-126)||(19995942-19996004)
chr1 (316-358)||(36070189-36070231)
chr1 (317-358)||(15581055-15581096)
chr1 (318-358)||(17420142-17420182)
[»] chr7 (2 HSPs)
chr7 (318-366)||(3501057-3501105)
chr7 (318-358)||(48157211-48157251)
[»] chr6 (1 HSPs)
chr6 (318-358)||(2514641-2514681)
[»] chr5 (2 HSPs)
chr5 (318-358)||(11054125-11054165)
chr5 (318-358)||(38829726-38829766)
[»] chr3 (2 HSPs)
chr3 (318-358)||(35394792-35394832)
chr3 (318-346)||(48397597-48397625)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 186 - 404
Target Start/End: Complemental strand, 32212941 - 32212723
Alignment:
Q  186 tgtagaaattaaacgaccctgtagaaaccaacttattcttttcattacttggacgacgttttggtacacttggtaaaataccatcaatagctcataaaaa 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32212941 tgtagaaattaaacgaccctgtagaaaccaacttattcttttcattacttggacgacgttttggtacacttggtaaaagaccatcaatagctcataaaaa 32212842  T
Q  286 cggtttataacttgacttatattnnnnnnntaactttattttatcttttattataaaaataggtcatacataatcattatgctatgagcactaaataaaa 385  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212841 cggtttataacttgacttatattaaaaaaataactttattttatcttttattataaaaataggtcatacataatcattatgctatgagcactaaataaaa 32212742  T
Q  386 ttggtgcaggaggttcact 404  Q
    |||||||||||||||||||    
T  32212741 ttggtgcaggaggttcact 32212723  T

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Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 32213642 - 32213474
Alignment:
Q  1 gcacacatcaaccaatcaagaactgccaagtaagcttaagtataatgaactaaacctaatatgttagggtgctgtattagataaactggacattaagcca 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32213642 gcacacatcaaccaatcaagaactgccaagtcagcttaagtataatgaactaaacctaatatgttagggtgctgtattagataaactggacattaagcca 32213543  T
Q  101 agagattggtcttgctttattttgttaaattgttgtgaacatagaaactcgattgttcttgtttataat 169  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  32213542 agagattggtcttgctttattttgttaaattgtcgtgaacatagaaactcgattgttcttgttaataat 32213474  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 18962127 - 18962169
Alignment:
Q  316 taactttattttatcttttattataaaaataggtcatacataa 358  Q
    ||||||||||||||||||| |||||||||||| | ||||||||    
T  18962127 taactttattttatcttttgttataaaaatagctaatacataa 18962169  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 5045248 - 5045288
Alignment:
Q  318 actttattttatcttttattataaaaataggtcatacataa 358  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  5045248 actttattttatcttttgttataaaaatagcttatacataa 5045288  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 25228291 - 25228235
Alignment:
Q  93 ttaagccaagagattggtcttgctttattttgttaaattgttgtgaacatagaaactc 150  Q
    ||||||||||| |||||||||| | |||||||||||||||| ||| ||||||||||||    
T  25228291 ttaagccaagacattggtcttgatctattttgttaaattgtcgtg-acatagaaactc 25228235  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 21193977 - 21193934
Alignment:
Q  318 actttattttatcttttattataaaaataggtcatacataatca 361  Q
    |||||||||||||||||| ||||||||||| | |||||||||||    
T  21193977 actttattttatcttttactataaaaatagcttatacataatca 21193934  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 347
Target Start/End: Complemental strand, 30770864 - 30770833
Alignment:
Q  316 taactttattttatcttttattataaaaatag 347  Q
    ||||||||||||||||||||||||||||||||    
T  30770864 taactttattttatcttttattataaaaatag 30770833  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 8422928 - 8422968
Alignment:
Q  318 actttattttatcttttattataaaaataggtcatacataa 358  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  8422928 actttattttatctttttttataaaaatagcttatacataa 8422968  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 4558779 - 4558737
Alignment:
Q  316 taactttattttatcttttattataaaaataggtcatacataa 358  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  4558779 taactttattttatcttttattatagaaatagcttatacataa 4558737  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 347
Target Start/End: Original strand, 31315544 - 31315573
Alignment:
Q  318 actttattttatcttttattataaaaatag 347  Q
    ||||||||||||||||||||||||||||||    
T  31315544 actttattttatcttttattataaaaatag 31315573  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 19996004 - 19995942
Alignment:
Q  64 ttagggtgctgtattagataaactggacattaagccaagagattggtcttgctttattttgtt 126  Q
    ||||||| || |||||||||||  ||||||| | |||||| |||||||||| |||||||||||    
T  19996004 ttagggttctatattagataaataggacattcaaccaagaaattggtcttgatttattttgtt 19995942  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 36070231 - 36070189
Alignment:
Q  316 taactttattttatcttttattataaaaataggtcatacataa 358  Q
    ||||||||||||||||||| ||||||||||||  |||||||||    
T  36070231 taactttattttatcttttgttataaaaatagcccatacataa 36070189  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 15581096 - 15581055
Alignment:
Q  317 aactttattttatcttttattataaaaataggtcatacataa 358  Q
    |||||||||||||||||| |||||||||||| |||| |||||    
T  15581096 aactttattttatcttttgttataaaaatagctcatgcataa 15581055  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 17420182 - 17420142
Alignment:
Q  318 actttattttatcttttattataaaaataggtcatacataa 358  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  17420182 actttattttatcttttcttataaaaatagtttatacataa 17420142  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 3501057 - 3501105
Alignment:
Q  318 actttattttatcttttattataaaaataggtcatacataatcattatg 366  Q
    ||||||||||||||||||||||| || ||| | |||||||| |||||||    
T  3501057 actttattttatcttttattatataattagcttatacataagcattatg 3501105  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 48157211 - 48157251
Alignment:
Q  318 actttattttatcttttattataaaaataggtcatacataa 358  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  48157211 actttattttatcttttattatagaaataagttatacataa 48157251  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 2514681 - 2514641
Alignment:
Q  318 actttattttatcttttattataaaaataggtcatacataa 358  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  2514681 actttattttatcttttattatagaaatagcttatacataa 2514641  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 11054165 - 11054125
Alignment:
Q  318 actttattttatcttttattataaaaataggtcatacataa 358  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  11054165 actttattttatcttttattatagaaatagcttatacataa 11054125  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 38829726 - 38829766
Alignment:
Q  318 actttattttatcttttattataaaaataggtcatacataa 358  Q
    |||| ||||||||||||||||||||||||||| ||| ||||    
T  38829726 acttaattttatcttttattataaaaataggttatatataa 38829766  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 35394792 - 35394832
Alignment:
Q  318 actttattttatcttttattataaaaataggtcatacataa 358  Q
    ||||||||||||||||||||||| |||||| | ||||||||    
T  35394792 actttattttatcttttattatagaaatagattatacataa 35394832  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 48397625 - 48397597
Alignment:
Q  318 actttattttatcttttattataaaaata 346  Q
    |||||||||||||||||||||||||||||    
T  48397625 actttattttatcttttattataaaaata 48397597  T

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