View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17364_low_9 (Length: 420)
Name: NF17364_low_9
Description: NF17364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17364_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 14732019 - 14731619
Alignment:
| Q |
1 |
acaaatacaaataaaacaagaattaggacaaaacaaaataaatgtcttattttcttatgataaacaaaaaattatgtaagagtggtctaaccttttatac |
100 |
Q |
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| T |
14732019 |
acaaatacaaataaaacaagaattaggacaaaacaaaataaatgtcttattttcttatgataaacaaaaaattatgtaagagtggtctaaccttttatac |
14731920 |
T |
|
| Q |
101 |
agggcttttacatcttcccctaacaatggactttctagaaacatatcaccacattccttcacatcaactgtctcaacttcaaaagctttgtcaccacaat |
200 |
Q |
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| T |
14731919 |
agggcttttacatcttcccctaacaatggactttctagaaacatatcaccacattccttcacatcaactgtctcaacttcaaaagctttgtcaccacaat |
14731820 |
T |
|
| Q |
201 |
attcattccattcaaaccacattttcgaaattaattccttcttgacacaagtactgtgatcttcctcttctggagaatcagcagctatcaatctatacac |
300 |
Q |
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| T |
14731819 |
attcattccattcaaaccacattttcgaaattaattccttcttgacacaagtactgtgatcttcctcttctggagaatcagcagctatcaatcgatacac |
14731720 |
T |
|
| Q |
301 |
aaacactttccttttctggcctggtcggaaagcacggccaatagcttgacgagtaacagacgggttgaggtgcacatctaagatgatgacacgggatgct |
400 |
Q |
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| T |
14731719 |
aaacactttccttttctggcctggtcggaaagcacggccaatagcttgacgagtaacagacgggttgaggtgcacatctaagatgatgacacgggatgct |
14731620 |
T |
|
| Q |
401 |
c |
401 |
Q |
| |
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| T |
14731619 |
c |
14731619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 13951789 - 13952182
Alignment:
| Q |
1 |
acaaatacaaataaaacaagaattaggacaaaacaaaataaatgtcttattttcttatgataaacaaaaaattatgtaagagtggtctaaccttttatac |
100 |
Q |
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|||||||||||||||||||||||||||| || | |||||||| ||||||| ||||||| |||||| || |||| |||||||||||||||||||| |
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| T |
13951789 |
acaaatacaaataaaacaagaattaggaaaata-----taaatgtcatattttcgtatgatatgcaaaaaggtaagtaaaagtggtctaaccttttatac |
13951883 |
T |
|
| Q |
101 |
agggcttttacatcttcccctaacaatggactttctagaaacatatcaccacattccttcacatcaactgtctcaacttcaaaagctttgtcaccacaat |
200 |
Q |
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|| |||||||| |||||||||||||| || || |||||||| | |||||||||||| |||||||||| ||| ||||||||||| || ||||||||||| |
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| T |
13951884 |
agagcttttacgtcttcccctaacaacgggctctctagaaatagatcaccacattctttcacatcaagtgtttcaacttcaaatgcacggtcaccacaat |
13951983 |
T |
|
| Q |
201 |
attcattccattcaaaccacattttcgaaattaattccttcttgacacaagtactgtgatcttcctcttctggagaatcagcagctatcaatctatacac |
300 |
Q |
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||||||||||||||||||||||||| || ||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
13951984 |
attcattccattcaaaccacatttttgagattaactccttcttgaaacaagtatggtgatcttcctcttctggagaatcagcagctatcaaacgatacac |
13952083 |
T |
|
| Q |
301 |
aaacactttccttttctggcctggtcggaaagcacggccaatagcttgacgagtaacagacgggttgaggtgcacatctaagatgatgacacgggatgc |
399 |
Q |
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||| |||||| ||||||| ||||| || |||||||| ||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| |
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| T |
13952084 |
aaagactttctttttctgtcctggccgaaaagcacgaccaatagcttgacgagtaacagatgggttgagatgaacatccaagatgatgacacgggatgc |
13952182 |
T |
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