View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17365_high_2 (Length: 340)
Name: NF17365_high_2
Description: NF17365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17365_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 101 - 323
Target Start/End: Original strand, 13400672 - 13400894
Alignment:
| Q |
101 |
ttcaagaagctgaagtccctgattgatttaagatgaaagcattcaatataaagataaataggagacattgttcacaaagacaatatggtttcagactgca |
200 |
Q |
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| T |
13400672 |
ttcaagaagctgaagtccctgattgatttaagatgaaagcattcaatataaagataaataagagacattgttcacaaagacaatatggtttcagactgaa |
13400771 |
T |
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| Q |
201 |
aaaatcagaatcaagaaagtgcccttttctgttgttcattttccagcaactagaaaaatctatgttcctctccatagacaaggtatatgtctcatggtag |
300 |
Q |
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| T |
13400772 |
aaaatctgaatctacaaaatgcccttttctgttgatcattttctagcaactagaaaaatctatgttcctctccatagacaaggtatatgtctcatggtag |
13400871 |
T |
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| Q |
301 |
aatgttgtttcctatttattaat |
323 |
Q |
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| T |
13400872 |
aatgttgtttcctatttattaat |
13400894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 13400582 - 13400654
Alignment:
| Q |
17 |
tcgttcttttgttgttaatagggttgttattgg--------taaggcaaggaaagtgcccttttggtttgtctt |
82 |
Q |
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| T |
13400582 |
tcgttcttttgttgttaatagggttgtcattggtaacttgataaggcaaggaaagtgccc-tttggtttgtctt |
13400654 |
T |
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