View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17365_high_4 (Length: 221)
Name: NF17365_high_4
Description: NF17365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17365_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 1539937 - 1540143
Alignment:
| Q |
1 |
agcagcaggaagagtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtaggagatgttttcaga |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1539937 |
agcagcaggaagggtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtaggagatgttttcaga |
1540036 |
T |
|
| Q |
101 |
acagttttcaagccagaacagcatgcccctgatggtttggttatggtactgtcatttgaaacaaatgacaaacaatcagccatgatgacaacaatggttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1540037 |
acagttttcaagccagaacagcatgcccctgatggtttggttatggtactgtcatttgaaacaaatgacaaacaatcagccatgatgacaacaatggttg |
1540136 |
T |
|
| Q |
201 |
aacaatc |
207 |
Q |
| |
|
||||||| |
|
|
| T |
1540137 |
aacaatc |
1540143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 29804009 - 29804130
Alignment:
| Q |
2 |
gcagcaggaagagtggcagcttttgtaacattcaaaacaacaccaagattagcactgtttttgagagaatcacaaagacaagtaggagatgttttcagaa |
101 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||| |||||||||| | |||||| | |||| || ||||| ||||||| ||||| ||||| || | |
|
|
| T |
29804009 |
gcagcaggaagagaagtagctttggtaacattcaagacaacaccaaactgagcactactcttgaaagcctcacagagacaagaaggagcagttttgagca |
29804108 |
T |
|
| Q |
102 |
cagttttcaagccagaacagca |
123 |
Q |
| |
|
||| |||||| ||||||||||| |
|
|
| T |
29804109 |
cagatttcaaaccagaacagca |
29804130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University