View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17365_low_3 (Length: 391)
Name: NF17365_low_3
Description: NF17365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17365_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 173 - 382
Target Start/End: Complemental strand, 14597047 - 14596838
Alignment:
| Q |
173 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcg |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
14597047 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaggatgtggttacagggtaccgcatgcacaatcg |
14596948 |
T |
|
| Q |
273 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14596947 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatctgcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
14596848 |
T |
|
| Q |
373 |
acaggttctg |
382 |
Q |
| |
|
|||||||||| |
|
|
| T |
14596847 |
acaggttctg |
14596838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 173 - 382
Target Start/End: Original strand, 14611523 - 14611732
Alignment:
| Q |
173 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcg |
272 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || |
|
|
| T |
14611523 |
catgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatggatcagtgacagaggacgtcgttacaggttaccgcatgcacaaccg |
14611622 |
T |
|
| Q |
273 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
372 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14611623 |
tggatggcgttctgtatattgcgtgaccaagcgagatgcatttcgcggatcagcaccaattaaccttactgatcgactacaccaggtgctaagatgggcc |
14611722 |
T |
|
| Q |
373 |
acaggttctg |
382 |
Q |
| |
|
|||||||||| |
|
|
| T |
14611723 |
acaggttctg |
14611732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 14597212 - 14597098
Alignment:
| Q |
8 |
agcagaacctgtgtctgtcatttcttgttggtatgtatactttgtcaaacacaaacatataagtcataaaaaatatttttgtacttatatacaatattat |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14597212 |
agcagaatctgtgtctgtcatttcttgttggtatgtatactttgtcaaacacaaacatataagtcataaaaaatatttttgtacttatatacaatattat |
14597113 |
T |
|
| Q |
108 |
atatgaaaagacaac |
122 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14597112 |
atatgaaaagacaac |
14597098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 380
Target Start/End: Complemental strand, 15417259 - 15417057
Alignment:
| Q |
178 |
aggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcgtggat |
277 |
Q |
| |
|
|||||||| || || |||||||||||||| ||| | || ||||||||||| |||||||||||||| || || || || ||| | |||||||| ||||||| |
|
|
| T |
15417259 |
aggtatgaggataaaacagaatggggagatagaataggttggatttatggatcagtgacagaagatgttgtaactggttacagaatgcacaaccgtggat |
15417160 |
T |
|
| Q |
278 |
ggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggccacagg |
377 |
Q |
| |
|
|| | || ||||||| | || || |||| || || |||||| ||||||| || ||||| || ||||| ||||||| || ||||||||||| ||||| |
|
|
| T |
15417159 |
ggagatcgatatattgcatcacaaaaagagacgctttccgtggaacagcacctataaatctcaccgatcgtttacaccaagttctaagatgggcaacagg |
15417060 |
T |
|
| Q |
378 |
ttc |
380 |
Q |
| |
|
||| |
|
|
| T |
15417059 |
ttc |
15417057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 320
Target Start/End: Complemental strand, 12192859 - 12192718
Alignment:
| Q |
179 |
ggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcgtggatg |
278 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| || || || || || || ||||| || | ||||||||| | ||||| |
|
|
| T |
12192859 |
ggtatgaagataagaccgaatggggagatagagttggatggatttacgggtcggtaaccgaggatgttgtgacaggttatagaatgcacaatagaggatg |
12192760 |
T |
|
| Q |
279 |
gcgttctgtatattgtgtaaccaagcgagatgcatttcgtgg |
320 |
Q |
| |
|
| | ||||| |||||||| |||||| | ||||| || ||||| |
|
|
| T |
12192759 |
gaggtctgtgtattgtgtgaccaagagggatgccttccgtgg |
12192718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University