View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17365_low_4 (Length: 356)
Name: NF17365_low_4
Description: NF17365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17365_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 7067788 - 7067460
Alignment:
| Q |
11 |
cacagaagagaaaacgatgtctgaaagctttacatcatcctttcataccctgcaaatctaacaggtacatatatatcatatatctgttgtatctacatgt |
110 |
Q |
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| T |
7067788 |
cacagaagagaaaacgatgtctgaaagctttacatcatcctttcataccctgcaaatctaacaggtacat--atatcatatatctgttgtatctacatgt |
7067691 |
T |
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| Q |
111 |
atatattaatcaaacacacacagatccatcatcaa-tttagcaaacttgaaaatgattgatgaaaacnnnnnnnntcaccatttttctatttcttcactt |
209 |
Q |
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| T |
7067690 |
atatattaatcaaacacacacagatccatcatcaattttagcaaacttgaaaatgattgatgaaaacaaaaaaaatcaccatttttctatttcttcactt |
7067591 |
T |
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| Q |
210 |
aatttctactatgc-tacctagctagctagctatacatatttaattatttatctttacactatttttggattttgttacttttctgtcctatgaatatta |
308 |
Q |
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| T |
7067590 |
aatttctactaggcttacctagctagctagctatacatatttaattatttatctttacactatttttggattttgttacttttctgtcctatgaatatta |
7067491 |
T |
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| Q |
309 |
atgttaattgaattattggacagtggtgtat |
339 |
Q |
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| T |
7067490 |
atgataattgaattattggacagtggtgtat |
7067460 |
T |
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