View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17365_low_6 (Length: 272)
Name: NF17365_low_6
Description: NF17365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17365_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 7133724 - 7133480
Alignment:
| Q |
10 |
attattcttcaatgcactatagtacacaaatacaatacataataaactgtgtacaataccagggtcatcaatagaaatcacatttagaaatacaagttca |
109 |
Q |
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| T |
7133724 |
attattcttcaaagcactatagtacacaaatacaatacataataaactgtgtacaataccagggtcatcaatagaaatcacatttagaaatacaagttca |
7133625 |
T |
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| Q |
110 |
tccgacacctatccttgatcaaacacaacatacaattcacccattcttgctcaagcacaacaagaatgcatctcaattctcaacccaccttgatcatgtg |
209 |
Q |
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| T |
7133624 |
tcctacacttatccttgatcaaacacaacatacaattcacccattcttgctcaagcacaacaagaatgcatctcaattctcaacccaccttgatcatgtg |
7133525 |
T |
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| Q |
210 |
aaaacatcttctgtcaaaggcagcagtaaatacaaccagtagcac |
254 |
Q |
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| T |
7133524 |
aaaacatcttctgtcaaaggcagcagtaaatacaatcaatagcac |
7133480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 7128222 - 7128155
Alignment:
| Q |
187 |
tctcaacccaccttgatcatgtgaaaacatcttctgtcaaaggcagcagtaaatacaaccagtagcac |
254 |
Q |
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||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
7128222 |
tctcaacccaccttgatgaagtgaaaacatcttctttcaaaggcagcaataaatacaaccagtagcac |
7128155 |
T |
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