View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17366_low_1 (Length: 535)
Name: NF17366_low_1
Description: NF17366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17366_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 525
Target Start/End: Original strand, 43394201 - 43394712
Alignment:
| Q |
14 |
cacagagtttgaaaattggtataaaagttttaatttctggactgtatcacatgatgcggctgcaatattattgctgtagtagtgtctgcaacgacatcaa |
113 |
Q |
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| T |
43394201 |
cacagagtttgaaaattggtataaaagttttaatttctggactgtatcacatgatgcggctgcaatattattgctgtagtagtgtctgcaacgacatcaa |
43394300 |
T |
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| Q |
114 |
cccgcaattgtgctatgattataaatcacaacaaaacacttatcgcaacaccacaacatagtggaaacaaacaacacctacattagaccgcaacagacaa |
213 |
Q |
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| T |
43394301 |
cccgcaattgtgctatgattataaatcacaacaaaacacttatcgcaacaccacaacatagtggaaacaaacaacacctacattagaccgcaacagacaa |
43394400 |
T |
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| Q |
214 |
tatattacccaagtttttatagctggggcaataagagagaatcacaataatggtacttgtaacaaggtgtaacattatttcctttatagtgatgatagta |
313 |
Q |
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| T |
43394401 |
tatattacccaagtttttatagctgggacaataagagagagtcacaatgatggtatttgtaacaaggtgtaacataatttcctttatagtgatgatagta |
43394500 |
T |
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| Q |
314 |
caaactataatgcttcatagcaggattcctatagccctttttgattaaaaagaacataggatagacctgatatatatttggcagcacaatgctctcaaac |
413 |
Q |
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| T |
43394501 |
caaactataatgcttcatagcaggattcctatagccctttttgattaaaaagaacataggatagacctgatatatatttggcagcacaatgctctcaaac |
43394600 |
T |
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| Q |
414 |
aggccatattgcctttccaattctagtggtgaatacttaacannnnnnnnnnnnccttcgtagttacaaaaatcaccaattacattttgcatgccttcat |
513 |
Q |
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| T |
43394601 |
aggccatattgcctttccaattctagtggtgaatacttaacatttttcttttttccttcgtagttacaaaaatcaccaattacattttgcatgccttcat |
43394700 |
T |
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| Q |
514 |
taaatgcatata |
525 |
Q |
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| T |
43394701 |
taaatgcatata |
43394712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 43406795 - 43406844
Alignment:
| Q |
476 |
gttacaaaaatcaccaattacattttgcatgccttcattaaatgcatata |
525 |
Q |
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| T |
43406795 |
gttacaaaattcaccaattacattttgcatggcttcattaaattcatata |
43406844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 451
Target Start/End: Original strand, 43406729 - 43406771
Alignment:
| Q |
409 |
caaacaggccatattgcctttccaattctagtggtgaatactt |
451 |
Q |
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| T |
43406729 |
caaacaggcaatttttcctttccaattctagtggtgaatactt |
43406771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 37160154 - 37160231
Alignment:
| Q |
71 |
ggctgcaatattattgctgtagtagtgtctgcaacgacatcaacccgcaattgtgctatgattataaatcacaacaaa |
148 |
Q |
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| T |
37160154 |
ggctgcaatattattgttgcggcagagtttgcaacagtatcagcccacaattgtgctatgattataaatcacaacaaa |
37160231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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