View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17366_low_2 (Length: 422)

Name: NF17366_low_2
Description: NF17366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17366_low_2
NF17366_low_2
[»] chr7 (7 HSPs)
chr7 (19-407)||(2333751-2334139)
chr7 (254-409)||(41482419-41482572)
chr7 (266-409)||(23318950-23319090)
chr7 (266-409)||(39644867-39645007)
chr7 (241-339)||(24429720-24429821)
chr7 (262-362)||(39594642-39594742)
chr7 (96-163)||(29200485-29200552)
[»] chr1 (7 HSPs)
chr1 (251-409)||(26793720-26793876)
chr1 (266-362)||(50004908-50005004)
chr1 (262-401)||(19806764-19806902)
chr1 (273-401)||(4076365-4076490)
chr1 (251-362)||(9383223-9383335)
chr1 (250-373)||(6768258-6768382)
chr1 (262-362)||(49236174-49236274)
[»] chr4 (9 HSPs)
chr4 (250-407)||(45413765-45413920)
chr4 (252-362)||(36625533-36625644)
chr4 (254-362)||(2183302-2183411)
chr4 (262-362)||(19181421-19181521)
chr4 (251-362)||(43481302-43481412)
chr4 (261-360)||(44126013-44126112)
chr4 (251-339)||(34666439-34666528)
chr4 (254-360)||(26635260-26635367)
chr4 (273-339)||(24155198-24155264)
[»] chr2 (4 HSPs)
chr2 (251-409)||(40626432-40626588)
chr2 (266-361)||(6452471-6452566)
chr2 (267-407)||(6457563-6457700)
chr2 (266-362)||(18665167-18665263)
[»] chr6 (4 HSPs)
chr6 (262-361)||(8547443-8547542)
chr6 (262-339)||(8573796-8573873)
chr6 (242-408)||(18596615-18596779)
chr6 (262-338)||(129107-129183)
[»] chr8 (5 HSPs)
chr8 (273-362)||(31734323-31734412)
chr8 (266-340)||(11066512-11066586)
chr8 (262-362)||(9028642-9028742)
chr8 (262-371)||(22573133-22573242)
chr8 (262-339)||(556809-556888)
[»] chr3 (3 HSPs)
chr3 (262-409)||(38457696-38457844)
chr3 (252-360)||(7038613-7038722)
chr3 (277-409)||(48936324-48936451)
[»] chr5 (2 HSPs)
chr5 (266-339)||(13109739-13109812)
chr5 (262-362)||(34731276-34731376)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 2333751 - 2334139
Alignment:
Q  19 gttgaaactgctattgattaggaagataattgacatcgattggatataattaaatcaacggatcgaaaaactggaagtggaatttaattgaagaaacaag 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2333751 gttgaaactgctattgattagggagataattgacatcgattggatataattaaatcaacggatcgaaaaactggaattggaatttaattgaagaaacaag 2333850  T
Q  119 aagtagtggaattggaatataatccatattgattgggaaaataatcgnnnnnnnnnnnnnnnnnnnnnnnnnctagaagcaataggagtcgaaggaggtt 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||                         |||||||||||  ||||||||||| |||    
T  2333851 aagtagtggaattggaatataatcgatattgattgggaaaataatcgaaaaaaaatgaaaaaagaaaaaaaactagaagcaatgagagtcgaaggaagtt 2333950  T
Q  219 tttgaggaatatagaatacgcttgtttgatagttatgctatcagttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggat 318  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  2333951 tttgaggaatatagaatacgcgtgtttgatagttatgctatcggttgctaaccaaccaaaaaccagagataaaaataacaaaaggtgaataggataggat 2334050  T
Q  319 tcgaaataggtttaagttatccaatcttattggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtct 407  Q
    |  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  2334051 taaaaataggtttaagttatccaatcctattggtgcaccaaacaccggattgaatattcaggatatgatagtgttatcatatcatgtct 2334139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 409
Target Start/End: Original strand, 41482419 - 41482572
Alignment:
Q  254 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggt 352  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||||  |||| ||||||| ||||  |||||||||||||||||||  || | |||||    
T  41482419 tgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggt 41482518  T
Q  353 gcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttc 409  Q
    |||||||||| |  ||| ||   ||| || |||||||| ||||| ||||||||||||    
T  41482519 gcaccaaacagcgcattaaa---tcaggagatgatagttttatcctatcatgtcttc 41482572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 409
Target Start/End: Original strand, 23318950 - 23319090
Alignment:
Q  266 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacct 365  Q
    |||||| | |||||||||||||||||||| |||||   | ||||||||||||||  |||||||||||| ||||||  || | |||||| |||||||| |     
T  23318950 ctaacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaaca 23319049  T
Q  366 gattgaatattcaagatatgatagtgttatcatatcatgtcttc 409  Q
    ||||   || ||| |||||||||||||||||||||| |||||||    
T  23319050 gatt---taatcaggatatgatagtgttatcatatcctgtcttc 23319090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 409
Target Start/End: Complemental strand, 39645007 - 39644867
Alignment:
Q  266 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacct 365  Q
    |||||| ||||||||| ||||||||||||||||||   ||| ||||||||||||  |||| ||||||||||||||  |  |||||| |||||||||| |     
T  39645007 ctaacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaaca 39644908  T
Q  366 gattgaatattcaagatatgatagtgttatcatatcatgtcttc 409  Q
     |||||| ||  | ||||||||||| |||||||||| |||||||    
T  39644907 aattgaa-at--atgatatgatagttttatcatatcctgtcttc 39644867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 24429821 - 24429720
Alignment:
Q  241 tgtttgatag--ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagtta 337  Q
    ||||||||||  |||||||||||| ||||||||| ||||||||| ||||||||||||||||||  |||| || |||||||||  |||||| ||||| |||    
T  24429821 tgtttgatagctttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaatta 24429722  T
Q  338 tc 339  Q
    ||    
T  24429721 tc 24429720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 39594742 - 39594642
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 361  Q
    |||||||||| | ||||||| |||||||||||| |||||   |||||| |||| |||| | ||||||||||| ||| |  ||||||||||||||||||||    
T  39594742 gttgctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcaccaaac 39594643  T
Q  362 a 362  Q
    |    
T  39594642 a 39594642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 29200485 - 29200552
Alignment:
Q  96 tggaatttaattgaagaaacaagaagtagtggaattggaatataatccatattgattgggaaaataat 163  Q
    |||||| |||||||| |||||||||| ||  |||||||||||||||  ||||| ||||||||||||||    
T  29200485 tggaatataattgaaaaaacaagaagcagatgaattggaatataattgatatttattgggaaaataat 29200552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 251 - 409
Target Start/End: Complemental strand, 26793876 - 26793720
Alignment:
Q  251 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 349  Q
    |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||   ||| |||||||||||| |||||| |||||||||||||  |  ||||    
T  26793876 ttatgctatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctatt 26793777  T
Q  350 ggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttc 409  Q
    ||||||||||||| | |||||||   ||| |||||||||||  |||||||||||||||||    
T  26793776 ggtgcaccaaacaacggattgaa---tcaggatatgatagttctatcatatcatgtcttc 26793720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 50004908 - 50005004
Alignment:
Q  266 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaaca 362  Q
    |||||| ||||||||| ||||||||||||||||||  |||| |||||||||||| ||||||||||||| ||||||  | ||||||||||||||||||    
T  50004908 ctaacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaaca 50005004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 401
Target Start/End: Original strand, 19806764 - 19806902
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgc--accaa 359  Q
    |||| ||||| ||||||||| |||||| | || ||||||  ||||||||||||||||| ||||||||||||| ||||||  || ||||| |||  |||||    
T  19806764 gttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaataggtttaatttatcctttcctattgatgcaaaccaa 19806863  T
Q  360 acacctgattgaatattcaagatatgatagtgttatcatatc 401  Q
    ||||| |||||||||   | |||| |||||||||||||||||    
T  19806864 acaccagattgaata---aggataggatagtgttatcatatc 19806902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 401
Target Start/End: Original strand, 4076365 - 4076490
Alignment:
Q  273 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctgattgaa 372  Q
    ||||||||| |||||| | || ||||||  ||||||||||||||||| | ||||||||||| ||||||  || ||||| ||||||||||||| |||| ||    
T  4076365 accaaaaactaaggattagaaaaacaaagagtgaataggataggattagtaataggtttaatttatcctttcctattgatgcaccaaacaccagattaaa 4076464  T
Q  373 tattcaagatatgatagtgttatcatatc 401  Q
    ||   | | ||||||||||||||||||||    
T  4076465 ta---agggtatgatagtgttatcatatc 4076490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 362
Target Start/End: Original strand, 9383223 - 9383335
Alignment:
Q  251 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 349  Q
    |||||||||||| ||||||||| | ||||||  |||||| |||||||||||  |||| ||||||| |||| ||||| ||||||| ||||||  || ||||    
T  9383223 ttatgctatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaattggtttaatttatccgttcctatt 9383322  T
Q  350 ggtgcaccaaaca 362  Q
    |||||||||||||    
T  9383323 ggtgcaccaaaca 9383335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 6768382 - 6768258
Alignment:
Q  250 gttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttat 348  Q
    ||||||||||||| || |||||| ||||||||  ||||||||||||||||||   || |||| |||||||  |||||| |||||| |||||   |  |||    
T  6768382 gttatgctatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggataggaaataagtttaatttatcattttctat 6768283  T
Q  349 tggtgcaccaaacacctgattgaat 373  Q
    |||| ||||||||| | ||||||||    
T  6768282 tggtacaccaaacaacagattgaat 6768258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 49236274 - 49236174
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 361  Q
    |||||||||| |||||||||||||||||  ||||| |||   ||  ||||||||||   |||||| |||||| ||||||  |  ||||||||||||||||    
T  49236274 gttgctaacccaccaaaaaccaaggatatgaataagaaaggttgggtaggataggaaatgaaatatgtttaatttatccttttctattggtgcaccaaac 49236175  T
Q  362 a 362  Q
    |    
T  49236174 a 49236174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 250 - 407
Target Start/End: Original strand, 45413765 - 45413920
Alignment:
Q  250 gttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttat 348  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||   |  ||||||||||||  ||||||||||||| ||||||  || |||    
T  45413765 gttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcctttcctat 45413864  T
Q  349 tggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtct 407  Q
    |||||||||||||| | |||||||   |||||||||||||||  |||| |||| |||||    
T  45413865 tggtgcaccaaacaaccgattgaa---tcaagatatgatagttctatcctatcctgtct 45413920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 252 - 362
Target Start/End: Original strand, 36625533 - 36625644
Alignment:
Q  252 tatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattg 350  Q
    |||||||||| |||||||||| | ||||||  |||||| | ||| |||||  ||||||||||||||||||| ||||||||||| |||||  ||| ||||     
T  36625533 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggattcgtaataggtttaatttatcatatcctatta 36625632  T
Q  351 gtgcaccaaaca 362  Q
    ||||||||||||    
T  36625633 gtgcaccaaaca 36625644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 362
Target Start/End: Complemental strand, 2183411 - 2183302
Alignment:
Q  254 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggt 352  Q
    ||||||||| ||||||||| ||||||||  ||||||||||||||||||   || ||||||||||||| |||||  |||||| ||||||  |  |||||||    
T  2183411 tgctatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggattggaaatgagtttaatttatccttttctattggt 2183312  T
Q  353 gcaccaaaca 362  Q
    ||||||||||    
T  2183311 gcaccaaaca 2183302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 19181421 - 19181521
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 361  Q
    |||||||| | ||||||||| ||||| |||||||| |||   ||| |||||||||||| ||||||||||||| |||||  ||| | ||||||||||||||    
T  19181421 gttgctaatccaccaaaaactaaggacaaaaataataaaggatgagtaggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaac 19181520  T
Q  362 a 362  Q
    |    
T  19181521 a 19181521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 362
Target Start/End: Original strand, 43481302 - 43481412
Alignment:
Q  251 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 349  Q
    |||||||||||| ||||||| | | ||||||| | |||||||||||| |||| ||||||| ||| ||||| |||||  |||||| ||||||  |||||||    
T  43481302 ttatgctatcaggttgctaatccaacaaaaacta-ggataaaaataataaaaggtgaataagat-ggattagaaatgagtttaatttatcctttcttatt 43481399  T
Q  350 ggtgcaccaaaca 362  Q
    |||||||||||||    
T  43481400 ggtgcaccaaaca 43481412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 44126112 - 44126013
Alignment:
Q  261 agttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaa 360  Q
    ||||||||||| | ||||||| ||| || | || ||||||| ||||||||||||||||| |||||| |||||| |||||   || ||||| |||||||||    
T  44126112 agttgctaacccatcaaaaacaaagaattagaaaaacaaaaggtgaataggataggattagaaataagtttaatttatcatttcctattgctgcaccaaa 44126013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 339
Target Start/End: Complemental strand, 34666528 - 34666439
Alignment:
Q  251 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 339  Q
    |||||||||||| ||||||||| || ||||   | |||||||||||| |||  | |||||||||| |||| |||||||||||||||||||    
T  34666528 ttatgctatcaggttgctaacccacaaaaagttacggataaaaataagaaagagggaataggatatgattagaaataggtttaagttatc 34666439  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 360
Target Start/End: Original strand, 26635260 - 26635367
Alignment:
Q  254 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggt 352  Q
    ||||||||| ||||||||| ||||||||| |||||||| ||||| |||    || |||||||| ||| |||||||||| || |||||  ||| | |||||    
T  26635260 tgctatcaggttgctaacccaccaaaaactaaggataagaataataaaggaggagtaggatagaattggaaataggttaaatttatcatatcatgttggt 26635359  T
Q  353 gcaccaaa 360  Q
    ||||||||    
T  26635360 gcaccaaa 26635367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 24155264 - 24155198
Alignment:
Q  273 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 339  Q
    ||||||||| |||||| |||||| ||||   ||| |||||||||||| ||||||| |||||||||||    
T  24155264 accaaaaactaaggatgaaaatatcaaatgctgagtaggataggattagaaatagctttaagttatc 24155198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 251 - 409
Target Start/End: Complemental strand, 40626588 - 40626432
Alignment:
Q  251 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 349  Q
    |||||||||||| ||| ||||| |||||||   |||||||||||||| |||  |||| |||||||||||| ||||||  ||||| ||||||  || ||||    
T  40626588 ttatgctatcaggttgttaacccaccaaaatttaaggataaaaataataaagggtgagtaggataggattagaaatatatttaaattatcctttcctatt 40626489  T
Q  350 ggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttc 409  Q
    ||||||||||||| | |||||||   ||||||||||||||| |||||||||| |||||||    
T  40626488 ggtgcaccaaacagcagattgaa---tcaagatatgatagttttatcatatcctgtcttc 40626432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 6452566 - 6452471
Alignment:
Q  266 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 361  Q
    |||||| | ||||||| |||||| | ||| |||||  |||||||||||| |||| | ||||||||||| |||||  |||||||||||||| |||||    
T  6452566 ctaacccaacaaaaactaaggattagaattacaaagcgtgaataggataagattagtaataggtttaatttatcatatcttattggtgcatcaaac 6452471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 407
Target Start/End: Complemental strand, 6457700 - 6457563
Alignment:
Q  267 taaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctg 366  Q
    ||||| ||||||||  ||||||||||||||||||  ||| ||| |||| |||| ||||| | ||||| |||||   |  ||||||||||||||||| | |    
T  6457700 taacccaccaaaaattaaggataaaaataacaaagggtggataagatatgattggaaattgatttaatttatcattttctattggtgcaccaaacaacag 6457601  T
Q  367 attgaatattcaagatatgatagtgttatcatatcatgtct 407  Q
    ||||||   ||| |||||||||||  ||||||||| |||||    
T  6457600 attgaa---tcatgatatgatagttctatcatatcctgtct 6457563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 18665263 - 18665167
Alignment:
Q  266 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaaca 362  Q
    |||||| ||||||||  |||||||||| |||||||  |||| || ||||  ||| ||||||||||||||||||||  || | ||||||||| |||||    
T  18665263 ctaacccaccaaaaattaaggataaaattaacaaagggtgagtaagatattattagaaataggtttaagttatcctttccttttggtgcacgaaaca 18665167  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 8547443 - 8547542
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 361  Q
    |||||||||| ||||||||| ||| ||||||||||||||  ||||||| |||| |||| ||||||||||||||||||||  || ||||| ||| ||||||    
T  8547443 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcctttcctattgatgctccaaac 8547542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 8573796 - 8573873
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 339  Q
    |||||||||| ||||||||| ||| ||||||||||||||  ||||||| |||| |||| |||||||||||||||||||    
T  8573796 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatc 8573873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 408
Target Start/End: Original strand, 18596615 - 18596779
Alignment:
Q  242 gtttgatagttatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 340  Q
    |||||||||||||| ||| | |||||||||| ||||||||| |||||||||| ||| |||  ||   || || ||||||  |||||||||||| |||||     
T  18596615 gtttgatagttatgatattatgttgctaacccaccaaaaactaaggataaaagtaataaagggttggtatgaaaggattaaaaataggtttaaattatca 18596714  T
Q  341 aatcttattggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtctt 408  Q
      ||||| | || || | |||| |  |||||||   |||||||||||||| |||||||||||||||||    
T  18596715 tttcttactagtacatcgaacatcaaattgaat---caagatatgatagttttatcatatcatgtctt 18596779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 338
Target Start/End: Original strand, 129107 - 129183
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttat 338  Q
    ||||||| || | ||||||| || |||||||||||||||  ||||||| |||||||||  ||||  |||||||||||    
T  129107 gttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatgagtttaagttat 129183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 31734412 - 31734323
Alignment:
Q  273 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaaca 362  Q
    ||||||||| ||||||||||||||||||  ||| || ||||| |||| ||||||||||||| |||||   ||||||||||||||||||||    
T  31734412 accaaaaactaaggataaaaataacaaagggtggatgggataagattggaaataggtttaatttatcatttcttattggtgcaccaaaca 31734323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 11066586 - 11066512
Alignment:
Q  266 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 340  Q
    |||||| ||||||||  ||||||||||||||||||   ||| |||||||||||| ||||||||||||||||||||    
T  11066586 ctaacctaccaaaaattaaggataaaaataacaaaggctgagtaggataggattagaaataggtttaagttatcc 11066512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 9028642 - 9028742
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 361  Q
    |||||||||| | |||||||||||||||| ||| |||||   | ||||||||||||||  |||||||||||| ||||||  |  | ||||||||||||||    
T  9028642 gttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaataggtttaaattatccttttatgttggtgcaccaaac 9028741  T
Q  362 a 362  Q
    |    
T  9028742 a 9028742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 371
Target Start/End: Complemental strand, 22573242 - 22573133
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 361  Q
    |||| ||||| ||||||||| |||||||| ||| |||||   | |||||||||||||| |||| ||||| || |||||   || | ||||||||||||||    
T  22573242 gttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttatcatttcctgttggtgcaccaaac 22573143  T
Q  362 acctgattga 371  Q
    | | ||||||    
T  22573142 aacggattga 22573133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 339
Target Start/End: Complemental strand, 556888 - 556809
Alignment:
Q  262 gttgctaaccaaccaaaaa--ccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 339  Q
    |||||||||| ||||||||  | |||||| | || ||||||  |||||||||||| |||| ||||||||||||| |||||    
T  556888 gttgctaacccaccaaaaaaacaaaggattagaaaaacaaagggtgaataggatatgattagaaataggtttaatttatc 556809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 409
Target Start/End: Complemental strand, 38457844 - 38457696
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatct----tattggtgcacc 357  Q
    |||||||||| |||||| || |||||||||| |||||||| ||||||||||||||||| |||||  |||||| ||||||  |||    ||||| ||||||    
T  38457844 gttgctaacccaccaaatactaaggataaaagtaacaaaaggtgaataggataggattagaaatgagtttaaattatcctttcttatgtattgatgcacc 38457745  T
Q  358 aaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttc 409  Q
    ||||  | ||||||| ||  ||||||  ||||| ||||||||||||||||||    
T  38457744 aaacggcggattgaa-at--aagatagtatagttttatcatatcatgtcttc 38457696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 360
Target Start/End: Complemental strand, 7038722 - 7038613
Alignment:
Q  252 tatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattg 350  Q
    |||||||||| |||||||||| | ||||||  |||||| | ||| ||||||  |||||| ||||||||| | ||||||||||| |||||  ||| ||||     
T  7038722 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattagtaataggtttaatttatcatatcctatta 7038623  T
Q  351 gtgcaccaaa 360  Q
    ||| ||||||    
T  7038622 gtgtaccaaa 7038613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 409
Target Start/End: Original strand, 48936324 - 48936451
Alignment:
Q  277 aaaaccaaggataaaaataacaaaatgtgaa-taggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctgattgaatat 375  Q
    ||||| ||||||||||||||||||  | ||| ||||||||||||  ||| |||||||| |||||   || | ||||||||||||||| | |||||||       
T  48936324 aaaactaaggataaaaataacaaag-gagaagtaggataggattaaaaacaggtttaaattatct--tcctgttggtgcaccaaacaacggattgaaa-- 48936418  T
Q  376 tcaagatatgatagtgttatcatatcatgtcttc 409  Q
     || ||||||||||| |||||||||| |||||||    
T  48936419 -caggatatgatagtcttatcatatcctgtcttc 48936451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 13109812 - 13109739
Alignment:
Q  266 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 339  Q
    |||||| ||||||||| ||||||||||||||||||  ||| |||||||| |||| |||||| ||| || |||||    
T  13109812 ctaacccaccaaaaactaaggataaaaataacaaagggtggataggatatgattagaaatatgttaaacttatc 13109739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 34731376 - 34731276
Alignment:
Q  262 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 361  Q
    |||||||||| | | ||||| |||||| |||||||||||   |  |||||||||||||   ||||||||||  ||||||  || ||||||||||||||||    
T  34731376 gttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcctttcctattggtgcaccaaac 34731277  T
Q  362 a 362  Q
    |    
T  34731276 a 34731276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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