View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17366_low_7 (Length: 253)
Name: NF17366_low_7
Description: NF17366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17366_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 32061365 - 32061136
Alignment:
| Q |
4 |
tccaacaaaatataactgatatattaggtgtgcgggcagtgctggaaactagcaagtatttggatagagtatggcaaaagatcaatatctggagtagtaa |
103 |
Q |
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| T |
32061365 |
tccaacaaagtataactgatatattaggtgtgcgggcagtgctggaaactagcaagtatttggatagagtatggcaaaagatcaatatctggagtagtaa |
32061266 |
T |
|
| Q |
104 |
gtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaaattacctaatacattacta |
203 |
Q |
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|||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32061265 |
gtgtttttctaaagcgagaaaggagattatgattaaatcagtgctttagtcaattccatcatatgtgatgagtattttcaaattacctaatacattacta |
32061166 |
T |
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| Q |
204 |
gatgaaatcgaggagatgataaatggcttt |
233 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32061165 |
gatgaaatcgaggagatgataaatggcttt |
32061136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 3236931 - 3237043
Alignment:
| Q |
69 |
agagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatg |
168 |
Q |
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| T |
3236931 |
agagtgtggcaaagaattaatagctggagtagcaagtgtttgtctagatctggaagggaggttatgattaagtctgtccttcagtcaattccctcatatg |
3237030 |
T |
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| Q |
169 |
tgatgagtatttt |
181 |
Q |
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| T |
3237031 |
tgatgagcatttt |
3237043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 34933491 - 34933637
Alignment:
| Q |
65 |
ggatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatca |
164 |
Q |
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||||||||| ||||||| |||| || |||||| ||||| |||||||||||||| | |||||| ||||||| |||| || ||| | | |||||||| |
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| T |
34933491 |
ggatagagtgtggcaaagaatcagtagctggagcagtaaatgtttgtctaaagccgggagggaggttatgatcaaatctgttcttcaagctattccatct |
34933590 |
T |
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| Q |
165 |
tatgtgatgagtattttcaaattacctaatacattactagatgaaat |
211 |
Q |
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||||| |||||||| || | ||||| || ||||||||||| ||||| |
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| T |
34933591 |
tatgtcatgagtatctttaggttaccaaacacattactagaggaaat |
34933637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 8970103 - 8969993
Alignment:
| Q |
66 |
gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcat |
165 |
Q |
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|||||||| ||||| ||||| | || |||||| ||||| |||||||||||||| |||||||| | ||||| |||| || ||| | || |||||||| | |
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| T |
8970103 |
gatagagtgtggcagaagattagtagctggagcagtaaatgtttgtctaaagcaggaagggaggtcatgatcaaatctgttcttcaatctattccatcct |
8970004 |
T |
|
| Q |
166 |
atgtgatgagt |
176 |
Q |
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|||| |||||| |
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| T |
8970003 |
atgttatgagt |
8969993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 4166664 - 4166761
Alignment:
| Q |
66 |
gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatc |
163 |
Q |
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|||||||||||||| |||||||||| ||||||||| || || ||||||||||| |||||||| | ||||| |||| ||| ||| | || |||||||| |
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| T |
4166664 |
gatagagtatggcagaagatcaatagctggagtagcaaatgcttgtctaaagcaggaagggaggtcatgatcaaatcagttcttcaatctattccatc |
4166761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 233
Target Start/End: Original strand, 39530618 - 39530785
Alignment:
| Q |
66 |
gatagagtatggcaaaagatcaatatctggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcat |
165 |
Q |
| |
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|||||||| ||||| || || |||| ||||||||||||||| ||||||||||| || | || ||||||| |||| ||| ||| |||| || | || | |
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| T |
39530618 |
gatagagtgtggcagaaaataaatagttggagtagtaagtgtctgtctaaagcgggacgagatgttatgatcaaatcagttcttcagtctatctcgtcgt |
39530717 |
T |
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| Q |
166 |
atgtgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataaatggcttt |
233 |
Q |
| |
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|||| ||||| || |||| ||||| ||||| ||||| || |||||||| ||||||| |||| |||| |
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| T |
39530718 |
atgttatgagcatcttcaggttaccgaatactttacttgaggaaatcgaaaagatgatgaatgccttt |
39530785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 21086688 - 21086558
Alignment:
| Q |
93 |
tggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaaattaccta |
192 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||| | ||||| |||| || ||| | || |||||||| ||||| |||||||| |||| |||||| | |
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| T |
21086688 |
tggagcagtaaatgtttgtctaaagcaggaagggaagtcatgataaaatcggttcttcaatctattccatcctatgttatgagtatcttcagattaccaa |
21086589 |
T |
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| Q |
193 |
atacattactagatgaaatcgaggagatgat |
223 |
Q |
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| || || |||||||||| ||| ||||||| |
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| T |
21086588 |
acactttgttagatgaaattgagaagatgat |
21086558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 37589980 - 37590073
Alignment:
| Q |
132 |
atgattaaattagtgctttagtcaattccatcatatgtgatgagtattttcaaattacctaatacattactagatgaaatcgaggagatgataa |
225 |
Q |
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||||||||||| || ||| |||||| || ||||||||||||||||||||||| | || ||| | ||| ||||||| || ||| ||||||||| |
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| T |
37589980 |
atgattaaatttgttcttctgtcaatcccctcatatgtgatgagtattttcaagctgccaaattctttattagatgagattgagaagatgataa |
37590073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 19233945 - 19234033
Alignment:
| Q |
93 |
tggagtagtaagtgtttgtctaaagcgagaagggagattatgattaaattagtgctttagtcaattccatcatatgtgatgagtatttt |
181 |
Q |
| |
|
||||||||||||||||| |||||||| | | ||| |||||||||||| || || |||| |||||||| ||||| ||||||||||| |
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| T |
19233945 |
tggagtagtaagtgtttatctaaagcagggcgtgaggttatgattaaatccgtcctacagtctattccatcgtatgttatgagtatttt |
19234033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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