View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17366_low_9 (Length: 235)

Name: NF17366_low_9
Description: NF17366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17366_low_9
NF17366_low_9
[»] chr3 (48 HSPs)
chr3 (10-113)||(50879786-50879890)
chr3 (10-111)||(37610680-37610782)
chr3 (58-111)||(31937183-31937236)
chr3 (10-111)||(52522026-52522127)
chr3 (63-111)||(17740983-17741031)
chr3 (63-111)||(19042303-19042351)
chr3 (10-111)||(28777604-28777706)
chr3 (58-111)||(5689867-5689920)
chr3 (58-111)||(43393970-43394023)
chr3 (58-111)||(46903541-46903594)
chr3 (58-111)||(53180721-53180774)
chr3 (59-111)||(46902480-46902532)
chr3 (58-109)||(5691014-5691065)
chr3 (10-111)||(28776547-28776649)
chr3 (58-111)||(17116349-17116402)
chr3 (58-111)||(31938224-31938277)
chr3 (63-111)||(47429775-47429823)
chr3 (195-235)||(50879972-50880012)
chr3 (63-111)||(55209934-55209982)
chr3 (64-111)||(53764904-53764951)
chr3 (58-111)||(35758152-35758205)
chr3 (58-111)||(35759148-35759201)
chr3 (11-111)||(47431104-47431205)
chr3 (70-111)||(54354308-54354349)
chr3 (59-111)||(21728059-21728111)
chr3 (63-111)||(47917530-47917578)
chr3 (64-111)||(55210825-55210872)
chr3 (10-111)||(2233222-2233324)
chr3 (64-110)||(11348390-11348435)
chr3 (58-108)||(54353171-54353221)
chr3 (58-111)||(10978153-10978206)
chr3 (70-111)||(43392766-43392807)
chr3 (63-111)||(2232755-2232803)
chr3 (58-109)||(17742211-17742263)
chr3 (58-109)||(19043531-19043583)
chr3 (64-111)||(23073291-23073338)
chr3 (64-111)||(33111762-33111809)
chr3 (195-232)||(11348278-11348315)
chr3 (10-43)||(35758103-35758136)
chr3 (58-111)||(37609469-37609522)
chr3 (11-44)||(47429720-47429753)
chr3 (63-111)||(10979092-10979140)
chr3 (71-111)||(11346973-11347013)
chr3 (71-111)||(21729105-21729145)
chr3 (10-42)||(35759218-35759250)
chr3 (195-235)||(47430980-47431020)
chr3 (71-111)||(50881033-50881073)
chr3 (195-235)||(55210059-55210099)
[»] chr1 (28 HSPs)
chr1 (10-111)||(5488784-5488886)
chr1 (10-113)||(5488600-5488704)
chr1 (10-111)||(7111392-7111494)
chr1 (10-111)||(52761513-52761615)
chr1 (58-111)||(51693295-51693348)
chr1 (63-111)||(51468492-51468540)
chr1 (58-109)||(1823215-1823266)
chr1 (64-111)||(52759517-52759564)
chr1 (10-111)||(7110325-7110427)
chr1 (58-108)||(18819410-18819460)
chr1 (58-108)||(40187750-40187800)
chr1 (63-111)||(45229520-45229568)
chr1 (58-111)||(17244323-17244376)
chr1 (58-111)||(21203159-21203212)
chr1 (74-111)||(47533771-47533808)
chr1 (71-111)||(50484913-50484953)
chr1 (63-111)||(51468818-51468866)
chr1 (58-111)||(38235067-38235120)
chr1 (58-111)||(52086773-52086826)
chr1 (64-111)||(52087691-52087738)
chr1 (65-111)||(1822064-1822110)
chr1 (10-44)||(50484981-50485015)
chr1 (58-111)||(45228423-45228476)
chr1 (10-42)||(17244274-17244306)
chr1 (64-104)||(47533110-47533150)
chr1 (63-111)||(50483664-50483711)
chr1 (10-42)||(52759462-52759494)
chr1 (195-235)||(52759650-52759690)
[»] scaffold0878 (3 HSPs)
scaffold0878 (58-111)||(2943-2996)
scaffold0878 (58-111)||(1916-1969)
scaffold0878 (10-43)||(3013-3046)
[»] scaffold0349 (1 HSPs)
scaffold0349 (58-111)||(9305-9358)
[»] scaffold0141 (2 HSPs)
scaffold0141 (58-111)||(31181-31234)
scaffold0141 (58-111)||(35202-35255)
[»] scaffold0049 (2 HSPs)
scaffold0049 (58-111)||(83578-83631)
scaffold0049 (58-111)||(79557-79610)
[»] chr7 (40 HSPs)
chr7 (58-111)||(32518560-32518613)
chr7 (63-111)||(29186817-29186865)
chr7 (57-111)||(37237145-37237199)
chr7 (10-111)||(44748480-44748582)
chr7 (58-111)||(7011782-7011835)
chr7 (58-111)||(7027140-7027193)
chr7 (58-111)||(19217775-19217828)
chr7 (11-111)||(44417557-44417658)
chr7 (10-111)||(9392732-9392834)
chr7 (57-111)||(13597290-13597344)
chr7 (10-111)||(43113773-43113875)
chr7 (58-111)||(18788477-18788530)
chr7 (58-111)||(45399927-45399980)
chr7 (63-111)||(13599174-13599222)
chr7 (10-111)||(18787247-18787349)
chr7 (10-111)||(29187947-29188049)
chr7 (10-111)||(44746825-44746927)
chr7 (58-111)||(9391667-9391720)
chr7 (58-111)||(27072571-27072624)
chr7 (58-111)||(27205689-27205742)
chr7 (58-111)||(43961081-43961134)
chr7 (58-111)||(43962486-43962539)
chr7 (65-111)||(37235939-37235985)
chr7 (58-108)||(44230575-44230625)
chr7 (58-111)||(26005499-26005552)
chr7 (58-111)||(44420440-44420492)
chr7 (195-235)||(9392597-9392637)
chr7 (71-111)||(44231778-44231818)
chr7 (64-111)||(32519666-32519713)
chr7 (69-111)||(9357713-9357755)
chr7 (10-44)||(13750621-13750655)
chr7 (58-111)||(3538490-3538543)
chr7 (10-43)||(7011732-7011765)
chr7 (10-43)||(7027090-7027123)
chr7 (10-43)||(18788546-18788579)
chr7 (58-111)||(48793433-48793486)
chr7 (195-231)||(12630841-12630877)
chr7 (63-111)||(13750553-13750601)
chr7 (195-235)||(43114879-43114919)
chr7 (70-110)||(47536771-47536811)
[»] chr6 (19 HSPs)
chr6 (58-111)||(27719883-27719936)
chr6 (10-111)||(3000710-3000812)
chr6 (10-111)||(32348954-32349056)
chr6 (58-111)||(34995499-34995552)
chr6 (58-111)||(34996678-34996731)
chr6 (63-111)||(21095296-21095344)
chr6 (10-111)||(32347907-32348009)
chr6 (10-111)||(32713800-32713902)
chr6 (58-111)||(21094553-21094606)
chr6 (10-108)||(32712454-32712553)
chr6 (10-111)||(11801259-11801361)
chr6 (63-111)||(18573037-18573085)
chr6 (58-111)||(7628473-7628526)
chr6 (70-105)||(18574236-18574271)
chr6 (58-111)||(19383072-19383124)
chr6 (70-111)||(29477900-29477941)
chr6 (63-111)||(7629723-7629771)
chr6 (71-111)||(13561434-13561474)
chr6 (10-42)||(34996748-34996780)
[»] chr5 (18 HSPs)
chr5 (11-111)||(13278148-13278249)
chr5 (58-111)||(12372462-12372515)
chr5 (58-111)||(18654445-18654498)
chr5 (58-111)||(39350562-39350615)
chr5 (10-111)||(19228937-19229039)
chr5 (64-111)||(4031975-4032022)
chr5 (10-108)||(9083216-9083315)
chr5 (64-111)||(39164208-39164255)
chr5 (10-111)||(19229990-19230092)
chr5 (58-111)||(39349628-39349681)
chr5 (73-111)||(6803542-6803580)
chr5 (10-111)||(9082078-9082180)
chr5 (58-107)||(4032946-4032995)
chr5 (58-111)||(12373634-12373687)
chr5 (10-43)||(4031920-4031953)
chr5 (10-43)||(6803610-6803643)
chr5 (10-42)||(12373708-12373740)
chr5 (195-235)||(13278031-13278071)
[»] chr2 (5 HSPs)
chr2 (58-111)||(27892253-27892306)
chr2 (58-111)||(16602873-16602926)
chr2 (58-111)||(27891254-27891307)
chr2 (10-108)||(23833066-23833165)
chr2 (10-42)||(38243942-38243974)
[»] chr8 (20 HSPs)
chr8 (63-111)||(9244218-9244266)
chr8 (58-111)||(26366111-26366164)
chr8 (58-111)||(30640945-30640998)
chr8 (70-111)||(9245348-9245389)
chr8 (58-111)||(26364889-26364942)
chr8 (58-111)||(41636979-41637032)
chr8 (63-111)||(522014-522062)
chr8 (10-111)||(20309022-20309124)
chr8 (10-111)||(21095655-21095757)
chr8 (58-111)||(30644622-30644675)
chr8 (58-111)||(34642812-34642865)
chr8 (63-111)||(41638070-41638118)
chr8 (66-108)||(31203071-31203113)
chr8 (70-111)||(22012297-22012338)
chr8 (70-111)||(22013176-22013217)
chr8 (70-111)||(34643882-34643923)
chr8 (58-108)||(20309971-20310021)
chr8 (58-108)||(21096604-21096654)
chr8 (70-104)||(43133992-43134026)
chr8 (195-235)||(34643755-34643795)
[»] chr4 (27 HSPs)
chr4 (10-111)||(38031267-38031369)
chr4 (10-111)||(38032337-38032439)
chr4 (58-111)||(8815274-8815327)
chr4 (58-107)||(17356509-17356558)
chr4 (63-111)||(8814287-8814335)
chr4 (64-111)||(18091734-18091781)
chr4 (64-111)||(23757887-23757934)
chr4 (64-111)||(34095576-34095623)
chr4 (10-111)||(22621966-22622068)
chr4 (10-111)||(22623060-22623162)
chr4 (57-111)||(35927033-35927087)
chr4 (57-111)||(36074711-36074765)
chr4 (58-111)||(48501241-48501294)
chr4 (63-111)||(7261460-7261508)
chr4 (64-111)||(5433324-5433371)
chr4 (64-111)||(56234938-56234985)
chr4 (10-111)||(48499463-48499565)
chr4 (58-111)||(10803037-10803090)
chr4 (58-111)||(10804112-10804165)
chr4 (63-111)||(35925844-35925892)
chr4 (195-235)||(34095459-34095499)
chr4 (63-111)||(48081484-48081532)
chr4 (10-44)||(7261528-7261562)
chr4 (10-44)||(56233823-56233857)
chr4 (11-44)||(34095644-34095677)
chr4 (10-42)||(18091679-18091711)
chr4 (195-235)||(18091867-18091907)
[»] scaffold0026 (1 HSPs)
scaffold0026 (64-111)||(104405-104452)
[»] scaffold1425 (3 HSPs)
scaffold1425 (58-111)||(282-335)
scaffold1425 (10-44)||(1586-1620)
scaffold1425 (70-111)||(1518-1559)
[»] scaffold0018 (1 HSPs)
scaffold0018 (63-111)||(25261-25309)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 50879786 - 50879890
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnn-tcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50879786 attcaattttgtccaattttgataattttaatcccatagaaaaaaaaatcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 50879885  T
Q  109 tttgt 113  Q
    |||||    
T  50879886 tttgt 50879890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 37610782 - 37610680
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37610782 attcaatttggtccaattttgataattttaatcccctaaaaaaaaagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaa 37610683  T
Q  109 ttt 111  Q
    |||    
T  37610682 ttt 37610680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 31937183 - 31937236
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31937183 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 31937236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 52522026 - 52522127
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaat 109  Q
    ||||||||| ||||||||||||||| ||||||||| ||           ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52522026 attcaatttggtccaattttgataactttaatcccctaaaaaaaagacagttggattacggaggtctatcagattttatagtgtatcaccaacacctaat 52522125  T
Q  110 tt 111  Q
    ||    
T  52522126 tt 52522127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 17740983 - 17741031
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17740983 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 17741031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 19042303 - 19042351
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19042303 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 19042351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 28777706 - 28777604
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  28777706 attcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaa 28777607  T
Q  109 ttt 111  Q
    |||    
T  28777606 ttt 28777604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 5689867 - 5689920
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5689867 cgttggattacggaggtctatcagattttatagtgtatcaccaacacttaattt 5689920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 43394023 - 43393970
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43394023 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 43393970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 46903594 - 46903541
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46903594 cgttggattacggaggtctattagattttatagtgtatcaccaacacctaattt 46903541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 53180774 - 53180721
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53180774 cgttggattacggaggtctatcagattgtatagtgtatcaccaacacctaattt 53180721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 46902480 - 46902532
Alignment:
Q  59 gttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  46902480 gttagattacggaggtctatcagattttatagtgtatcactaacaccaaattt 46902532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 5691065 - 5691014
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaat 109  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  5691065 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaat 5691014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 28776547 - 28776649
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  28776547 attcaatttggtccaattttgataattttaatcccctaaaaacagagaccgttggattacggaggtctatcagattttataatgtatcatcaacacctaa 28776646  T
Q  109 ttt 111  Q
    |||    
T  28776647 ttt 28776649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 17116349 - 17116402
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  17116349 cgttggattacggaggtccatcagagtttatagtgtatcaccaacacctaattt 17116402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 31938277 - 31938224
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  31938277 cgttggattacgaaggtctataagattttatagtgtatcaccaacacctaattt 31938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 47429775 - 47429823
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  47429775 gattacggaggtctattagattttatagtgtatcaccaacatctaattt 47429823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 50879972 - 50880012
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtcatc 235  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  50879972 taaacctactatttaatcactacaccaatatcattgtcatc 50880012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 55209934 - 55209982
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||    
T  55209934 gattacggaggtctatcagaatttatagtgtattaccaacacctaattt 55209982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 53764904 - 53764951
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  53764904 attacggaggtctatcagattttatggtgtatcaccaacacttaattt 53764951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 35758152 - 35758205
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  35758152 cgttggattacgaatgtctatcagattttacagtgtatcaccaacacctaattt 35758205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 35759201 - 35759148
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  35759201 cgttggattacgaatgtctatcagattttacagtgtatcaccaacacctaattt 35759148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 47431205 - 47431104
Alignment:
Q  11 ttcaattttgtccaattttgataattttaatcccat-agnnnnnnnntcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaat 109  Q
    |||||||| ||||||||||||||||||||||||| | |          |||| ||||| |||||||||| |||||||||||||||||||| |||||||||    
T  47431205 ttcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattatggaggtctattagattttatagtgtatcacccacacctaat 47431106  T
Q  110 tt 111  Q
    ||    
T  47431105 tt 47431104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 54354349 - 54354308
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  54354349 gaggtctatcagattttacagtgtatcaccaacacctaattt 54354308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 21728059 - 21728111
Alignment:
Q  59 gttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||| |||||||||  |||||||| |||||||||||||||||||||    
T  21728059 gttagattacgaaggtctatctcattttataatgtatcaccaacacctaattt 21728111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 47917578 - 47917530
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  47917578 gattacggaggtttatcagattttatagtgtattaccaacaccgaattt 47917530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 55210872 - 55210825
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||||||    
T  55210872 attacggagatctatcagattttataatgtatcaccaacacataattt 55210825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 2233324 - 2233222
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcc-catagnnnnnnnntcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| |||||||||||||||||||||||| |  |         ||||| ||||| |||| ||||| ||||||||||| |||||||||||||||||    
T  2233324 attcaatttggtccaattttgataattttaatcctctaaaaaaagagatcgttggattatggagatctataagattttatagcgtatcaccaacacctaa 2233225  T
Q  109 ttt 111  Q
    |||    
T  2233224 ttt 2233222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 11348435 - 11348390
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaatt 110  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  11348435 attacggaggtctatcagattttatagtatatcacc-acacctaatt 11348390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 54353171 - 54353221
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    |||| ||||||| |||||||||||||||||| ||||||||| |||||||||    
T  54353171 cgttggattacgaaggtctatcagattttatcgtgtatcactaacacctaa 54353221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 10978153 - 10978206
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| |||||||| | ||||||||||||||||||| ||||||||||    
T  10978153 cgttggattacgaaggtctataaaattttatagtgtatcaccatcacctaattt 10978206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 43392766 - 43392807
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  43392766 gaggtctatcagattttatagtgtaccaccaacaccaaattt 43392807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 2232755 - 2232803
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||| ||||||||  |||||||| |||||||||||||    
T  2232755 gattacggaggtctatgagattttacggtgtatcagcaacacctaattt 2232803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 17742263 - 17742211
Alignment:
Q  58 cgttagattacggaggtctatcagattt-tatagtgtatcaccaacacctaat 109  Q
    |||| ||||||||||||||||||||||| || ||||||||| |||||||||||    
T  17742263 cgttggattacggaggtctatcagatttatacagtgtatcaacaacacctaat 17742211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 19043583 - 19043531
Alignment:
Q  58 cgttagattacggaggtctatcagattt-tatagtgtatcaccaacacctaat 109  Q
    |||| ||||||||||||||||||||||| || ||||||||| |||||||||||    
T  19043583 cgttggattacggaggtctatcagatttatacagtgtatcaacaacacctaat 19043531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 23073338 - 23073291
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||||||||    
T  23073338 attacggaggtgtatcaaattttacggtgtatcaccaacacctaattt 23073291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 33111809 - 33111762
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||| | ||||||||||||||| || |||||||||||    
T  33111809 attacggaggtctataaaattttatagtgtatctcccacacctaattt 33111762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 11348315 - 11348278
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtc 232  Q
    |||||||||||||||||||||||||||  |||||||||    
T  11348315 taaacctactatttaatcactacaccaccatcattgtc 11348278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 35758103 - 35758136
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcc 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  35758103 attcaatttggtccaattttgataattttaatcc 35758136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 37609469 - 37609522
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||| |||||||||| |||||| ||||||| ||| |||||||||||||    
T  37609469 cgttggattagggaggtctataagatttaatagtgtctcatcaacacctaattt 37609522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 47429720 - 47429753
Alignment:
Q  11 ttcaattttgtccaattttgataattttaatccc 44  Q
    |||||||| |||||||||||||||||||||||||    
T  47429720 ttcaatttggtccaattttgataattttaatccc 47429753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 10979140 - 10979092
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||| ||||| ||||||  |||||||||||||| |||||||    
T  10979140 gattacggaggtttatcaaattttacggtgtatcaccaacatctaattt 10979092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 11346973 - 11347013
Alignment:
Q  71 aggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||| || ||| ||||||||||||||||||||||||||    
T  11346973 aggtctaccatattgtatagtgtatcaccaacacctaattt 11347013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 21729145 - 21729105
Alignment:
Q  71 aggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||| || |||||||||||||||| |||||||||||||    
T  21729145 aggtctaccatattttatagtgtatcatcaacacctaattt 21729105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 35759250 - 35759218
Alignment:
Q  10 attcaattttgtccaattttgataattttaatc 42  Q
    ||||||||| |||||||||||||||||||||||    
T  35759250 attcaatttggtccaattttgataattttaatc 35759218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 47431020 - 47430980
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtcatc 235  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  47431020 taaacctactatttcatcactacaccaccatcattgtcatc 47430980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 50881073 - 50881033
Alignment:
Q  71 aggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||| || ||||||||||||| ||||||||||||||||    
T  50881073 aggtctaccatattttatagtgtaccaccaacacctaattt 50881033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 55210059 - 55210099
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtcatc 235  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  55210059 taaacctactatttaatcactacaccaccatctttgtcatc 55210099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 5488886 - 5488784
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| |||         | ||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  5488886 attcaatttggtccaattttgataattttaatcccttagaaaaagagaccgttggattacggaggtctatcaaattttatagtgtatcaccaacacctaa 5488787  T
Q  109 ttt 111  Q
    |||    
T  5488786 ttt 5488784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 5488600 - 5488704
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    |||||||||  |||||||||||||||||||||||| |||         | ||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  5488600 attcaatttgatccaattttgataattttaatcccttagaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacgtaa 5488699  T
Q  109 tttgt 113  Q
    |||||    
T  5488700 tttgt 5488704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 7111494 - 7111392
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  7111494 attcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaa 7111395  T
Q  109 ttt 111  Q
    |||    
T  7111394 ttt 7111392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 52761615 - 52761513
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccat-agnnnnnnnntcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| | |          |||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  52761615 attcaatttggtccaattttgataattttaatcccctgaaaaaagagaccgttggattgcggaggtctatcagattttatagtgtatcaccaacacctaa 52761516  T
Q  109 ttt 111  Q
    |||    
T  52761515 ttt 52761513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 51693295 - 51693348
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51693295 cgttggattacggaggtctatcggattttatagtgtatcaccaacacctaattt 51693348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 51468492 - 51468540
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51468492 gattacggaggtctatcagattttatagtgtatcaccaacacccaattt 51468540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 1823266 - 1823215
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaat 109  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  1823266 cgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaat 1823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 52759517 - 52759564
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52759517 attacagaggtctatcagattttatagtgtatcaccaacacctaattt 52759564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 7110325 - 7110427
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnn-tcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          ||||| |||| |||||||||||||||||||||||||||||| |||| |||||    
T  7110325 attcaatttggtccaattttgataattttaatcccctaaaaaaagagatcgttggattgcggaggtctatcagattttatagtgtatcatcaacgcctaa 7110424  T
Q  109 ttt 111  Q
    |||    
T  7110425 ttt 7110427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 18819410 - 18819460
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  18819410 cgttggattacggaggtatatcagattttatagtgtatcaccaacacctaa 18819460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 40187750 - 40187800
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  40187750 cgttggattacggaggtctatcagattttatcgtgtatcaccaacacctaa 40187800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 45229568 - 45229520
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  45229568 gattacggaggtctatcagattttataatggatcaccaacacctaattt 45229520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 17244323 - 17244376
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  17244323 cgttggattacggaggtctatcagattttataatgtatcaccgatacctaattt 17244376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 21203159 - 21203212
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  21203159 cgttggattacaaaggtctatcagattttatagtgtatcatcaacacctaattt 21203212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 47533808 - 47533771
Alignment:
Q  74 tctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47533808 tctatcagattttatagtgtatcaccaacacctaattt 47533771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 50484953 - 50484913
Alignment:
Q  71 aggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  50484953 aggtctatcagattttacagtgtatcaccaacacctaattt 50484913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 51468866 - 51468818
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  51468866 gattacggagatctattagattttacagtgtatcaccaacacctaattt 51468818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 38235120 - 38235067
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| | |||||| |||||||| |||||||||||||||||||||||    
T  38235120 cgttggattacgaatgtctataagattttacagtgtatcaccaacacctaattt 38235067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 52086773 - 52086826
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| |||||||| | ||||||||||||||||||| ||||||||||    
T  52086773 cgttggattacgaaggtctataaaattttatagtgtatcaccatcacctaattt 52086826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 52087738 - 52087691
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||| ||||||  |||||||||||||| |||||||    
T  52087738 attacggaggtctatcaaattttacggtgtatcaccaacatctaattt 52087691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 1822064 - 1822110
Alignment:
Q  65 ttacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||| ||||||||| |||||||||||||||||  ||||||||||||    
T  1822064 ttacgaaggtctatctgattttatagtgtatcattaacacctaattt 1822110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 50485015 - 50484981
Alignment:
Q  10 attcaattttgtccaattttgataattttaatccc 44  Q
    ||||||||| |||||||||||||||||||||||||    
T  50485015 attcaatttggtccaattttgataattttaatccc 50484981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 45228423 - 45228476
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||| ||||||| ||||||||||||||||| ||| | ||||||    
T  45228423 cgttggattacggagatctatcaaattttatagtgtatcacaaacgcttaattt 45228476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 17244274 - 17244306
Alignment:
Q  10 attcaattttgtccaattttgataattttaatc 42  Q
    ||||||||| |||||||||||||||||||||||    
T  17244274 attcaatttggtccaattttgataattttaatc 17244306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 47533110 - 47533150
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacac 104  Q
    |||| ||| ||||||||||||||||| ||||||||||||||    
T  47533110 attatggaagtctatcagattttataatgtatcaccaacac 47533150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 50483664 - 50483711
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||| ||||| |||||||||| |||||| |||||||||||||||    
T  50483664 gattacggaagtcta-cagattttatcgtgtataaccaacacctaattt 50483711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 52759462 - 52759494
Alignment:
Q  10 attcaattttgtccaattttgataattttaatc 42  Q
    ||||||||| |||||||||||||||||||||||    
T  52759462 attcaatttagtccaattttgataattttaatc 52759494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 52759650 - 52759690
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtcatc 235  Q
    |||||||||||||||||||||||||||  ||||||| ||||    
T  52759650 taaacctactatttaatcactacaccaccatcattgacatc 52759690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 2996 - 2943
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2996 cgttagattacgaaggtctatcagattttatagtgtatcaccaacacctaattt 2943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 1916 - 1969
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||| | |||||| |||||||  |||||||||||||||||||||||    
T  1916 cgttagattacgaatgtctattagattttccagtgtatcaccaacacctaattt 1969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 3046 - 3013
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcc 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  3046 attcaatttggtccaattttgataattttaatcc 3013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 9305 - 9358
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9305 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 9358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 31181 - 31234
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31181 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 31234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 35255 - 35202
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35255 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 35202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 83631 - 83578
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  83631 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 83578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 79557 - 79610
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  79557 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 79610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 32518560 - 32518613
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32518560 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 32518613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 29186817 - 29186865
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29186817 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 29186865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 37237199 - 37237145
Alignment:
Q  57 tcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37237199 tcgttggattacggaggtctatcagattttatagtgtatgaccaacacctaattt 37237145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 44748582 - 44748480
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||| | ||||||||||||||||||||||||| |||         | ||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  44748582 attcaatatggtccaattttgataattttaatcccctagaaaaggagactgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaa 44748483  T
Q  109 ttt 111  Q
    |||    
T  44748482 ttt 44748480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 7011782 - 7011835
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7011782 cgttggattacggaggtctataagattttatagtgtatcaccaacacctaattt 7011835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 7027140 - 7027193
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7027140 cgttggattacggaggtctataagattttatagtgtatcaccaacacctaattt 7027193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 19217775 - 19217828
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19217775 cgttggattacggaggtctatcggattttatagtgtatcaccaacacctaattt 19217828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 44417557 - 44417658
Alignment:
Q  11 ttcaattttgtccaattttgataattttaatcccatagnnnnnnnn-tcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaat 109  Q
    |||||||| ||||||||||||||||||||||||| ||          | ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  44417557 ttcaatttggtccaattttgataattttaatcccctaaaaaaagagattgttggattacggaggtctatcagattttatagtctatcaccaacacctaat 44417656  T
Q  110 tt 111  Q
    ||    
T  44417657 tt 44417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 9392834 - 9392732
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| |||         | ||| |||||| ||||||||||||||||||||||||||||||  |||||||    
T  9392834 attcaatttggtccaattttgataattttaatcccctagaaaaagagaccgttggattacagaggtctatcagattttatagtgtatcaccggcacctaa 9392735  T
Q  109 ttt 111  Q
    |||    
T  9392734 ttt 9392732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 13597290 - 13597344
Alignment:
Q  57 tcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  13597290 tcgttggattagggaggtctataagattttatagtgtatcaccaacacctaattt 13597344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 43113773 - 43113875
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  43113773 attcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacagaggtctatcagattttatagtgtatcaccagcacctaa 43113872  T
Q  109 ttt 111  Q
    |||    
T  43113873 ttt 43113875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 18788530 - 18788477
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  18788530 cgttggattacgaaggtctatcagattttataatgtatcaccaacacctaattt 18788477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 45399980 - 45399927
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  45399980 cgttggattacgaaggtctatcagattttatagtgtatcactaacacctaattt 45399927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 13599222 - 13599174
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  13599222 gattacggaggtctatcagattttatagtgtatcagtaacacctaattt 13599174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 18787247 - 18787349
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| |||||||||||| ||||||||||||| ||||||||||||||| |||    
T  18787247 attcaatttggtccaattttgataattttaatcccctaaaaaaatagaccgttggattacggaggtttatcagattttatggtgtatcaccaacacttaa 18787346  T
Q  109 ttt 111  Q
    |||    
T  18787347 ttt 18787349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 29188049 - 29187947
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| |||| | ||||||||||||||||||||||| |||||||||||||||    
T  29188049 attcaatttagtccaattttgataattttaatcccctaaaaaaagagaccgttggattgcagaggtctatcagattttatagtgcatcaccaacacctaa 29187950  T
Q  109 ttt 111  Q
    |||    
T  29187949 ttt 29187947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 44746825 - 44746927
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||| ||||||||||||||||||||| |||         | ||| |||||||||||||||||| |||||||||||||| | ||||||||||    
T  44746825 attcaatttggtcaaattttgataattttaatcccttagaaaaagagaccgttggattacggaggtctatcatattttatagtgtattatcaacacctaa 44746924  T
Q  109 ttt 111  Q
    |||    
T  44746925 ttt 44746927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 9391667 - 9391720
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  9391667 cgttggattacgaaggtctatcagattttatagtgtatcatcaacaccaaattt 9391720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 27072624 - 27072571
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  27072624 cgttggattacagaggtctataagattttatagtttatcaccaacacctaattt 27072571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 27205689 - 27205742
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  27205689 cgttggattacagaggtctataagattttatagtctatcaccaacacctaattt 27205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 43961081 - 43961134
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  43961081 cgttggattacaaaggtctatcagattttatagtgtatcactaacacctaattt 43961134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 43962539 - 43962486
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||    
T  43962539 cgttggattacgaaggtctatcagattttatagtatatcactaacacctaattt 43962486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 37235939 - 37235985
Alignment:
Q  65 ttacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||||    
T  37235939 ttacggaggtcaatcagattttacaatgtatcaccaacacctaattt 37235985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 44230575 - 44230625
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    |||| |||||| |||||||||||||||||| ||||||||| ||||||||||    
T  44230575 cgttggattacagaggtctatcagattttacagtgtatcatcaacacctaa 44230625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 26005499 - 26005552
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||  |||||||| ||||||||||||||||||||||||| ||||||    
T  26005499 cgttggattacaaaggtctataagattttatagtgtatcaccaacacgtaattt 26005552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 44420492 - 44420440
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||    
T  44420492 cgttggattacgaaggtctatcagattt-atagtgtatcaccaacatctaattt 44420440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 9392637 - 9392597
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtcatc 235  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  9392637 taaacctactatttaatcactacaccatcatcattgtcatc 9392597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 44231818 - 44231778
Alignment:
Q  71 aggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  44231818 aggtctaccagattttatagtgtatcaccaacacctgattt 44231778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 32519713 - 32519666
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||| ||||||| |||||| |||||||| |||||||||||||||||    
T  32519713 attacgaaggtctaccagattgtatagtgtgtcaccaacacctaattt 32519666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 9357755 - 9357713
Alignment:
Q  69 ggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||| || ||||| |||||||||||||||||||||||||||    
T  9357755 ggaggtttaccagatcttatagtgtatcaccaacacctaattt 9357713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 13750655 - 13750621
Alignment:
Q  10 attcaattttgtccaattttgataattttaatccc 44  Q
    ||||||||| |||||||||||||||||||||||||    
T  13750655 attcaatttggtccaattttgataattttaatccc 13750621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 3538543 - 3538490
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||| ||||||| ||||||  |||||||||||||| |||||||    
T  3538543 cgttggattacggagatctatcaaattttacggtgtatcaccaacatctaattt 3538490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 7011732 - 7011765
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcc 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  7011732 attcaatttggtccaattttgataattttaatcc 7011765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 7027090 - 7027123
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcc 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  7027090 attcaatttggtccaattttgataattttaatcc 7027123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 18788579 - 18788546
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcc 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  18788579 attcaatttggtccaattttgataattttaatcc 18788546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 48793486 - 48793433
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||  |||| ||| |||||||||||||||||||||||||| |||||    
T  48793486 cgttggattacaaaggtgtataagattttatagtgtatcaccaacaccaaattt 48793433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 12630841 - 12630877
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgt 231  Q
    |||||||||||||||||||||||||||  ||||||||    
T  12630841 taaacctactatttaatcactacaccatcatcattgt 12630877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 13750601 - 13750553
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||| |||||||| |||||||||||||||||| || || |||||||    
T  13750601 gattacgaaggtctattagattttatagtgtatcatcatcaactaattt 13750553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 43114919 - 43114879
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtcatc 235  Q
    |||||||||||||||||||||||||||  |||||| |||||    
T  43114919 taaacctactatttaatcactacaccaccatcattatcatc 43114879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 47536811 - 47536771
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacacctaatt 110  Q
    |||||||||||||| | || |||||||||||||||||||||    
T  47536811 gaggtctatcagatctaatggtgtatcaccaacacctaatt 47536771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 27719883 - 27719936
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27719883 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 27719936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 3000812 - 3000710
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnn-tcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          ||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  3000812 attcaatttagtccaattttgataattttaatcccctaaaaacacagatcgttggattacgaaggtctatcagattttatagtgtatcactaacacctaa 3000713  T
Q  109 ttt 111  Q
    |||    
T  3000712 ttt 3000710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 32349056 - 32348954
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  32349056 attcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaa 32348957  T
Q  109 ttt 111  Q
    |||    
T  32348956 ttt 32348954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 34995499 - 34995552
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  34995499 cgttagattacgaaggtctatcagattttatagtgtatcaccaacatctaattt 34995552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 34996731 - 34996678
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34996731 cgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaattt 34996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 21095344 - 21095296
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21095344 gattacggaggtctaccagattttatagtgtatcaccaacacctaattt 21095296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 32347907 - 32348009
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnnt-cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||           |||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  32347907 attcaatttggtccaattttgataattttaatcccctaaaaaaagagaacgttggattacgggggtctatcagattttatagtgtatcatcaacacctaa 32348006  T
Q  109 ttt 111  Q
    |||    
T  32348007 ttt 32348009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 32713902 - 32713800
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| |||||||||||||||| |||||||| ||||||||||||||||||||    
T  32713902 attcaatttggtccaattttgataattttaatcccctaaaaaaagtgaccgttggattacggaggtctataagattttacagtgtatcaccaacacctaa 32713803  T
Q  109 ttt 111  Q
    |||    
T  32713802 ttt 32713800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 21094553 - 21094606
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  21094553 cgttggattacggaggtctactagattttatagtgtatcaccaacacctaattt 21094606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 32712454 - 32712553
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| |||||||||||||||||| ||||||||||||| |||||||||||||    
T  32712454 attcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtaccaccaacacctaa 32712553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 11801361 - 11801259
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccat-agnnnnnnnntcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| | |          |||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  11801361 attcaatttggtccaattttgataattttaatcccctcaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtatcattaacacctaa 11801262  T
Q  109 ttt 111  Q
    |||    
T  11801261 ttt 11801259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 18573037 - 18573085
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  18573037 gattacggaggtctatcaaattttacagtgtatcaccaacacataattt 18573085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 7628473 - 7628526
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||| |||| |||| ||||||| | |||||||||||||||||||||||    
T  7628473 cgttagattatggagatctaccagatttcacagtgtatcaccaacacctaattt 7628526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 18574271 - 18574236
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacacc 105  Q
    ||||||||||||||||||||||||| ||||||||||    
T  18574271 gaggtctatcagattttatagtgtaccaccaacacc 18574236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 19383124 - 19383072
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||  |||||||||||||||||||||||||| ||||| |||||||    
T  19383124 cgttggattacgatggtctatcagattttatagtgtatca-caacatctaattt 19383072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 29477900 - 29477941
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||| |||||||||| ||||||||||||||||| ||||    
T  29477900 gaggtctaccagattttatggtgtatcaccaacacctgattt 29477941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 7629771 - 7629723
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||| || | ||||||||||||||||||||| |||||| |||||||    
T  7629771 gattacgaagatttatcagattttatagtgtatctccaacatctaattt 7629723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 13561434 - 13561474
Alignment:
Q  71 aggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||| ||||||| | |||||||||||||||||||||||||    
T  13561434 aggtccatcagatctaatagtgtatcaccaacacctaattt 13561474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 34996780 - 34996748
Alignment:
Q  10 attcaattttgtccaattttgataattttaatc 42  Q
    ||||||||| |||||||||||||||||||||||    
T  34996780 attcaatttggtccaattttgataattttaatc 34996748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 13278249 - 13278148
Alignment:
Q  11 ttcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaat 109  Q
    ||||||||  ||||||||||||||||||||||||||||         | ||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  13278249 ttcaatttgatccaattttgataattttaatcccatagaaaaagagaccgttggattagggaggtctatcagattttatagtgtatcaccaacacctaat 13278150  T
Q  110 tt 111  Q
    ||    
T  13278149 tt 13278148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 12372462 - 12372515
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12372462 cgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaattt 12372515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 18654445 - 18654498
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18654445 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 18654498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 39350615 - 39350562
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39350615 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 39350562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 19228937 - 19229039
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| |||||||||||||||| |||||||||||||||||| ||||||||||    
T  19228937 attcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctattagattttatagtgtatcatcaacacctaa 19229036  T
Q  109 ttt 111  Q
    |||    
T  19229037 ttt 19229039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 4031975 - 4032022
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  4031975 attacggaagtctaccagattttatagtgtatcaccaacacctaattt 4032022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 9083315 - 9083216
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| ||||||| |||||||| |||||||||||||||||||||||||||||    
T  9083315 attcaatttggtccaattttgataattttaatcccctaaaaaaggagaccgttggattacgaaggtctataagattttatagtgtatcaccaacacctaa 9083216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 39164208 - 39164255
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  39164208 attacggaggcctatcaaattttatagtgtatcaccaacacctaattt 39164255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 19230092 - 19229990
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccat-agnnnnnnnntcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| | |          |||| |||||||||||||||||| |||||||||||||||| |||||| |||    
T  19230092 attcaatttggtccaattttgataattttaatcccctcaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtatcatcaacacttaa 19229993  T
Q  109 ttt 111  Q
    |||    
T  19229992 ttt 19229990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 39349628 - 39349681
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  39349628 cgtttgattacggaggtctattagattttatcgtggatcaccaacacctaattt 39349681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 6803580 - 6803542
Alignment:
Q  73 gtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  6803580 gtctatcagattttatagtgtatcaccaacatctaattt 6803542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 9082078 - 9082180
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatag-nnnnnnnntcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| |||          |||| ||| ||||| ||||||||||||||||||| |||| | |||||||||    
T  9082078 attcaatttggtccaattttgataattttaatcccctagaaaatgagaccgttggatcacggatgtctatcagattttatagtatatcgctaacacctaa 9082177  T
Q  109 ttt 111  Q
    |||    
T  9082178 ttt 9082180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 4032995 - 4032946
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacaccta 107  Q
    |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  4032995 cgttggattacggaggtctatcagattttataatgtatcattaacaccta 4032946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 12373687 - 12373634
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||| | ||||||||||||||| | |||||||||||||||||||||    
T  12373687 cgttggattacgaatgtctatcagattttacactgtatcaccaacacctaattt 12373634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 4031920 - 4031953
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcc 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  4031920 attcaatttagtccaattttgataattttaatcc 4031953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 6803643 - 6803610
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcc 43  Q
    ||||||||| ||||||||||||||||||||||||    
T  6803643 attcaatttggtccaattttgataattttaatcc 6803610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 12373740 - 12373708
Alignment:
Q  10 attcaattttgtccaattttgataattttaatc 42  Q
    ||||||||| |||||||||||||||||||||||    
T  12373740 attcaatttggtccaattttgataattttaatc 12373708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 13278071 - 13278031
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtcatc 235  Q
    ||||||||||||||||| |||||||||  ||||||||||||    
T  13278071 taaacctactatttaataactacaccaccatcattgtcatc 13278031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 27892306 - 27892253
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27892306 cgttagattacgaaggtctatcagattttatagtgtatcaccaacacctaattt 27892253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 16602873 - 16602926
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  16602873 cgttggattacggatgtctatcagattttacagtgtatcaccaacacctaattt 16602926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 27891254 - 27891307
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||| | ||||||||||||||  |||||||||||||||||||||||    
T  27891254 cgttagattacgaatgtctatcagattttccagtgtatcaccaacacctaattt 27891307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 23833066 - 23833165
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| |||||||||||||||  |||||||||||||||||| ||||||||||    
T  23833066 attcaatttagtccaattttgataattttaatcccctaaaaaagaagaccgttggattacggaggtctagaagattttatagtgtatcatcaacacctaa 23833165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 38243974 - 38243942
Alignment:
Q  10 attcaattttgtccaattttgataattttaatc 42  Q
    ||||||||| |||||||||||||||||||||||    
T  38243974 attcaatttggtccaattttgataattttaatc 38243942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 9244218 - 9244266
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9244218 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 9244266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 26366164 - 26366111
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  26366164 cgttagattacggaggtctattagattttatagtgtatcaccaacacataattt 26366111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 30640945 - 30640998
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30640945 cgttggattacggaggtctatcaaattttatagtgtatcaccaacacctaattt 30640998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 9245389 - 9245348
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9245389 gaggtctatcagattttatagtgtatcaccaacacctaattt 9245348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 26364889 - 26364942
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||| |||||||||||||||||||| |||||||||||||||||||||    
T  26364889 cgttggattacagaggtctatcagattttataatgtatcaccaacacctaattt 26364942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 41636979 - 41637032
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  41636979 cgttggattacggaagtctatcagattttatcgtgtatcaccaacacctaattt 41637032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 522062 - 522014
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  522062 gattacggaggtctatcaaattttatagtgtatcaccaacccctaattt 522014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 20309022 - 20309124
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||| ||||| |||         | ||| ||| || |||||||||||||||||||||||||||||||| ||||||    
T  20309022 attcaatttggtccaattttgataattttgatcccctagaaaaagagaccgttggatcactgaggtctatcagattttatagtgtatcaccaatacctaa 20309121  T
Q  109 ttt 111  Q
    |||    
T  20309122 ttt 20309124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 21095655 - 21095757
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||| ||||| |||         | ||| ||| || |||||||||||||||||||||||||||||||| ||||||    
T  21095655 attcaatttggtccaattttgataattttgatcccctagaaaaagagaccgttggatcactgaggtctatcagattttatagtgtatcaccaatacctaa 21095754  T
Q  109 ttt 111  Q
    |||    
T  21095755 ttt 21095757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 30644675 - 30644622
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||||||||| |||||||| || ||||||||||||||||||    
T  30644675 cgttggattacggaggtctatcaaattttataatggatcaccaacacctaattt 30644622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 34642812 - 34642865
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||| |||||||||||||||||||||||| ||||||||||| |||||||    
T  34642812 cgttggattgcggaggtctatcagattttatagtatatcaccaacatctaattt 34642865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 41638118 - 41638070
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||||    
T  41638118 gattacagaggtctatcatgttttatagtgtatcaccaacacctaattt 41638070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 31203071 - 31203113
Alignment:
Q  66 tacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  31203071 tacggaggtctatcaaattttataatgtatcaccaacacctaa 31203113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 22012297 - 22012338
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  22012297 gaggtctaccagattttatagtgtatcaccaacacctgattt 22012338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 22013217 - 22013176
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  22013217 gaggtctaccagattttatagtgtatcaccaacacctgattt 22013176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 34643923 - 34643882
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  34643923 gaggtctatcagattttatggcgtatcaccaacacctaattt 34643882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 20310021 - 20309971
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    |||| ||||| | |||||| |||||||||||||||||||||| ||||||||    
T  20310021 cgttggattatgaaggtctgtcagattttatagtgtatcacctacacctaa 20309971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 21096654 - 21096604
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    |||| ||||| | |||||| |||||||||||||||||||||| ||||||||    
T  21096654 cgttggattatgaaggtctgtcagattttatagtgtatcacctacacctaa 21096604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 43134026 - 43133992
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacac 104  Q
    |||||||| ||||||||||||||||||||||||||    
T  43134026 gaggtctaccagattttatagtgtatcaccaacac 43133992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 34643795 - 34643755
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtcatc 235  Q
    ||||||||||||||||||| |||||||  ||||||||||||    
T  34643795 taaacctactatttaatcattacaccaccatcattgtcatc 34643755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 38031267 - 38031369
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||||||          | |||  |||||||||||||||||||||||||||||||||| ||||||||||    
T  38031267 attcaatttggtccaattttgataattttaatcccataaaaaaaaagaccgttgaattacggaggtctatcagattttatagtgtatcatcaacacctaa 38031366  T
Q  109 ttt 111  Q
    |||    
T  38031367 ttt 38031369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 38032439 - 38032337
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  38032439 attcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaa 38032340  T
Q  109 ttt 111  Q
    |||    
T  38032339 ttt 38032337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 8815327 - 8815274
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8815327 cgttggattacggaggtctatcagattttatagtgtatcaccaacaccaaattt 8815274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 17356509 - 17356558
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacaccta 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17356509 cgttggattacggaggtctatcagattttatagtgtatcaccaacaccta 17356558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 8814287 - 8814335
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8814287 gattacggaggtctatcagattttatagtgtaacaccaacacctaattt 8814335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 18091734 - 18091781
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18091734 attacagaggtctatcagattttatagtgtatcaccaacacctaattt 18091781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 23757934 - 23757887
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23757934 attacggaggtctatcagattttatggtgtatcaccaacacctaattt 23757887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 34095623 - 34095576
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  34095623 attacggaggtctatcagattttatagtgtatcacccacacctaattt 34095576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 22621966 - 22622068
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| ||||||||||||||||||||||||||||||||||||| ||||| ||    
T  22621966 attcaatttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccgacaccgaa 22622065  T
Q  109 ttt 111  Q
    |||    
T  22622066 ttt 22622068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 22623162 - 22623060
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnntc-gttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          | ||| ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  22623162 attcaatttggtccaattttgataattttaatcccctacaaaaagagaccgttggattacggaggtctatcagattttataatgtatcaccaacatctaa 22623063  T
Q  109 ttt 111  Q
    |||    
T  22623062 ttt 22623060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 35927087 - 35927033
Alignment:
Q  57 tcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  35927087 tcgttggattacgaaggtctaccagattttatagtgtatcaccaacacctaattt 35927033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 36074765 - 36074711
Alignment:
Q  57 tcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  36074765 tcgttggattacgaaggtctatcatattttatagtgtatcaccaacacctaattt 36074711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 48501294 - 48501241
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  48501294 cgttagattacggaggtctgtcagattttattgtgtatcatcaacacctaattt 48501241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 7261508 - 7261460
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  7261508 gattacgaaggtctataagattttatagtgtatcaccaacacctaattt 7261460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 5433371 - 5433324
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  5433371 attacggaggtctatcagattttataatgtatcacaaacacctaattt 5433324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 56234985 - 56234938
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  56234985 attacgaaggtctatcagattttataatgtatcaccaacacctaattt 56234938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 48499463 - 48499565
Alignment:
Q  10 attcaattttgtccaattttgataattttaatcccatagnnnnnnnn-tcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaa 108  Q
    ||||||||| ||||||||||||||||||||||||| ||          ||||| |||||| ||||||||||||||||||  |||||||||||||| ||||    
T  48499463 attcaatttggtccaattttgataattttaatcccctaaaaaaagagatcgttggattacagaggtctatcagattttacggtgtatcaccaacatctaa 48499562  T
Q  109 ttt 111  Q
    |||    
T  48499563 ttt 48499565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 10803037 - 10803090
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  10803037 cgttggattacggaggtttatcagattttatattgtatcaccaacaccgaattt 10803090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 10804165 - 10804112
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  10804165 cgttggattacggaggtctatcagattttacagtgtatcatcaacgcctaattt 10804112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 35925844 - 35925892
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||| |||||||||||||||||||||||  |||||||||||||    
T  35925844 gattacggagatctatcagattttatagtgtatcgtcaacacctaattt 35925892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 34095499 - 34095459
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtcatc 235  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  34095499 taaacctactatttcatcactacaccactatcattgtcatc 34095459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 48081532 - 48081484
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| ||||||||| ||||| |||||| |||||||||||||||||||||    
T  48081532 gattgcggaggtctttcagagtttataatgtatcaccaacacctaattt 48081484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 7261562 - 7261528
Alignment:
Q  10 attcaattttgtccaattttgataattttaatccc 44  Q
    ||||||||| |||||||||||||||||||||||||    
T  7261562 attcaatttggtccaattttgataattttaatccc 7261528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 56233823 - 56233857
Alignment:
Q  10 attcaattttgtccaattttgataattttaatccc 44  Q
    ||||||||| |||||||||||||||||||||||||    
T  56233823 attcaatttggtccaattttgataattttaatccc 56233857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 34095677 - 34095644
Alignment:
Q  11 ttcaattttgtccaattttgataattttaatccc 44  Q
    |||||||| |||||||||||||||||||||||||    
T  34095677 ttcaatttggtccaattttgataattttaatccc 34095644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 18091679 - 18091711
Alignment:
Q  10 attcaattttgtccaattttgataattttaatc 42  Q
    ||||||||| |||||||||||||||||||||||    
T  18091679 attcaatttagtccaattttgataattttaatc 18091711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 18091867 - 18091907
Alignment:
Q  195 taaacctactatttaatcactacaccaatatcattgtcatc 235  Q
    |||||||||||||||||||||||||||  ||||||| ||||    
T  18091867 taaacctactatttaatcactacaccaccatcattgacatc 18091907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 104405 - 104452
Alignment:
Q  64 attacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  104405 attacggaggtctatcagattttatagtgtatcaccaacatctaattt 104452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 282 - 335
Alignment:
Q  58 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||| |||||| |||||||||||||||||| || ||||||||||||||||||||    
T  282 cgttggattacagaggtctatcagattttacagcgtatcaccaacacctaattt 335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 1620 - 1586
Alignment:
Q  10 attcaattttgtccaattttgataattttaatccc 44  Q
    ||||||||| |||||||||||||||||||||||||    
T  1620 attcaatttggtccaattttgataattttaatccc 1586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 1559 - 1518
Alignment:
Q  70 gaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    ||||||||||||||||||  |||||| |||||||||||||||    
T  1559 gaggtctatcagattttacggtgtataaccaacacctaattt 1518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 25309 - 25261
Alignment:
Q  63 gattacggaggtctatcagattttatagtgtatcaccaacacctaattt 111  Q
    |||||||||||| ||||| |||||||||||||| | |||||||||||||    
T  25309 gattacggaggtttatcacattttatagtgtattatcaacacctaattt 25261  T

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