View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17367_high_10 (Length: 374)
Name: NF17367_high_10
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17367_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 42380059 - 42380398
Alignment:
| Q |
18 |
caacaccttgatagctgctagacggccatatattcacttggccacgtacaacaaaaaattgttatgaacagttaaacaaatgtagaatctacttacatgc |
117 |
Q |
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| T |
42380059 |
caacaccttgatagctgctaggcggccatatattcacttggccacgtacaacaaaaaattgttatgaacagttaaaaaaatgtagaatctacttacatgc |
42380158 |
T |
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| Q |
118 |
aaggggcaacttaacccacttagataattgtgttgtgataccttgcacacaagaccatacccttttctgtttaacttattggatgcactaaaattgtgga |
217 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42380159 |
aagaggcaacttaacccacttagataattgt-----gataccttgcacacaagaccatacccttttctgtttaacttattggatgcactaaaattgtgga |
42380253 |
T |
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| Q |
218 |
tagttgtttgcaattccttgtagcagtagatggtaacattgtcaaacattgagaaatcttattggagcaaaataaaataaaattgaattgtagacaaaga |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42380254 |
tagttgtttgcaattccttgtagcagtagatgataacattgttaaacattgagaaatcttattggagcaaaataaaataaaattgaattatagacaaaga |
42380353 |
T |
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| Q |
318 |
catatttcacagagacattacaaagtaaagatttttatttacctatg |
364 |
Q |
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| T |
42380354 |
c--atttcacagagacattacaaagtaaagatttttatttacctatg |
42380398 |
T |
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