View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17367_high_16 (Length: 266)

Name: NF17367_high_16
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17367_high_16
NF17367_high_16
[»] chr6 (24 HSPs)
chr6 (16-252)||(26617187-26617418)
chr6 (16-252)||(26723115-26723346)
chr6 (75-230)||(26811431-26811586)
chr6 (87-252)||(26949595-26949760)
chr6 (90-252)||(25071596-25071758)
chr6 (87-252)||(26974986-26975151)
chr6 (87-249)||(26635624-26635786)
chr6 (87-249)||(26741590-26741752)
chr6 (87-205)||(27214351-27214469)
chr6 (87-205)||(27234759-27234877)
chr6 (87-230)||(26848594-26848737)
chr6 (87-250)||(26959099-26959263)
chr6 (25-252)||(27665205-27665432)
chr6 (161-252)||(24715590-24715684)
chr6 (120-178)||(28491682-28491740)
chr6 (120-178)||(29804092-29804150)
chr6 (90-191)||(28781076-28781177)
chr6 (87-178)||(29679704-29679795)
chr6 (90-191)||(27698643-27698744)
chr6 (90-191)||(27718528-27718629)
chr6 (90-191)||(27724994-27725095)
chr6 (96-177)||(28098532-28098613)
chr6 (90-191)||(28786215-28786316)
chr6 (90-191)||(28792336-28792437)
[»] chr2 (1 HSPs)
chr2 (27-252)||(17993772-17993997)
[»] scaffold1254 (1 HSPs)
scaffold1254 (90-191)||(66-167)
[»] scaffold0419 (1 HSPs)
scaffold0419 (90-191)||(7462-7563)
[»] scaffold0277 (1 HSPs)
scaffold0277 (90-191)||(13781-13882)
[»] scaffold0349 (2 HSPs)
scaffold0349 (90-191)||(3571-3672)
scaffold0349 (90-191)||(14504-14605)
[»] chr8 (1 HSPs)
chr8 (87-247)||(12588380-12588540)
[»] scaffold0012 (1 HSPs)
scaffold0012 (105-232)||(241789-241916)
[»] chr1 (1 HSPs)
chr1 (132-223)||(5924474-5924565)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 26617187 - 26617418
Alignment:
Q  16 cttcttccatctcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatc--gggcttcaccggcaatctctataaagctctt 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  26617187 cttcttctatctcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatctcgggcttcaccggcaatctctataaagctctt 26617286  T
Q  114 tgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagcattgaaaactcaagaattg 213  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||||||    
T  26617287 tgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacaccttcgctc-------gcattgaaaactcaagaattg 26617379  T
Q  214 ccattgttgtcttctctaaagactatgcttcttcttcat 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26617380 ccattgttgtcttctctaaagactatgcttcttcttcat 26617418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 26723115 - 26723346
Alignment:
Q  16 cttcttccatctcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatc--gggcttcaccggcaatctctataaagctctt 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  26723115 cttcttctatctcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatctcgggcttcaccggcaatctctataaagctctt 26723214  T
Q  114 tgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagcattgaaaactcaagaattg 213  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||||||    
T  26723215 tgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacaccttcgctc-------gcattgaaaactcaagaattg 26723307  T
Q  214 ccattgttgtcttctctaaagactatgcttcttcttcat 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26723308 ccattgttgtcttctctaaagactatgcttcttcttcat 26723346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 26811431 - 26811586
Alignment:
Q  75 actcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatca 174  Q
    |||||||| |||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| |||||||    
T  26811431 actcgatctggcttcaccggtcatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatca 26811530  T
Q  175 caccttcgctcctcaagagcattgaaaactcaagaattgccattgttgtcttctct 230  Q
    |||||||||||||||||||||||||| |||| || ||||||||| |||| ||||||    
T  26811531 caccttcgctcctcaagagcattgaacactctaggattgccattattgtattctct 26811586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 26949595 - 26949760
Alignment:
Q  87 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc 186  Q
    |||||||| ||||||||||||||||| | ||| || ||| |||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||    
T  26949595 ttcaccggtaatctctataaagctctctctgacaagggaatccgaaccttcattgatgataaggagcttcagaaaggtgacgaaatcacaccttcactcc 26949694  T
Q  187 tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcat 252  Q
    ||||||| |||||| | || |||||||||||| | ||||| ||||| || ||||||||||||||||    
T  26949695 tcaagagaattgaagaatcgagaattgccattatcgtcttttctaaggaatatgcttcttcttcat 26949760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 90 - 252
Target Start/End: Original strand, 25071596 - 25071758
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    ||||| ||||| ||||||||||||| ||| |||||| |||  ||||| ||||| ||||| |||||| ||| |||||| ||||||||||||||||||| ||    
T  25071596 accggtaatctttataaagctctttctgacaaaggaatccacacctttattgatgacaaagagcttaagagaggtgacgaaatcacaccttcgctccgca 25071695  T
Q  190 agagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcat 252  Q
    ||||||||||| | || |||||||||||| | |||||||||||||||||||||||||||||||    
T  25071696 agagcattgaagattcgagaattgccattatcgtcttctctaaagactatgcttcttcttcat 25071758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 26974986 - 26975151
Alignment:
Q  87 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc 186  Q
    |||||||| || |||||||||||||||| ||| |||||| ||   | ||||||||| |||||||||||| | ||||| || |||||||||||||||||||    
T  26974986 ttcaccggtaacctctataaagctctttctgacaaaggaatcaacatcttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcc 26975085  T
Q  187 tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcat 252  Q
    |||||||||||||| |||| || ||| ||||| | |||||||||||||||||||||||||||||||    
T  26975086 tcaagagcattgaagactcgaggattaccattatcgtcttctctaaagactatgcttcttcttcat 26975151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 87 - 249
Target Start/End: Original strand, 26635624 - 26635786
Alignment:
Q  87 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc 186  Q
    |||||||| || |||||||||||||||| ||| |||||| ||   ||||||||||| |||||||||||| | ||||| ||||||||||||||||||||||    
T  26635624 ttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaatcacaccttcgctcc 26635723  T
Q  187 tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttctt 249  Q
    |||||||||||||| | || || ||||||||| | || |||||||| || |||||||||||||    
T  26635724 tcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttctt 26635786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 87 - 249
Target Start/End: Original strand, 26741590 - 26741752
Alignment:
Q  87 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc 186  Q
    |||||||| || |||||||||||||||| ||| |||||| ||   ||||||||||| |||||||||||| | ||||| ||||||||||||||||||||||    
T  26741590 ttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaatcacaccttcgctcc 26741689  T
Q  187 tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttctt 249  Q
    |||||||||||||| | || || ||||||||| | || |||||||| || |||||||||||||    
T  26741690 tcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttctt 26741752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 27214351 - 27214469
Alignment:
Q  87 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc 186  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||    
T  27214351 ttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacatcttcgctcc 27214450  T
Q  187 tcaagagcattgaaaactc 205  Q
     |||||  |||||| ||||    
T  27214451 acaagaaaattgaagactc 27214469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 27234877 - 27234759
Alignment:
Q  87 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc 186  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||    
T  27234877 ttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacatcttcgctcc 27234778  T
Q  187 tcaagagcattgaaaactc 205  Q
     |||||  |||||| ||||    
T  27234777 acaagaaaattgaagactc 27234759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 26848594 - 26848737
Alignment:
Q  87 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc 186  Q
    ||||| || ||||||||||||||||||| ||| || ||| |||||||||||||||| |||||||| |||||||  |||||||| ||||||||||||||||    
T  26848594 ttcactggtaatctctataaagctctttctgacaatggaatccgaaccttcattgatgacaaggatcttcagagtggtgatgagatcacaccttcgctcc 26848693  T
Q  187 tcaagagcattgaaaactcaagaattgccattgttgtcttctct 230  Q
    |||||| ||||||| |||| || ||| ||||| |||| ||||||    
T  26848694 tcaagaacattgaagactcgaggatttccattcttgtattctct 26848737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 26959099 - 26959263
Alignment:
Q  87 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc 186  Q
    |||||||| || |||||||||||||||| ||| |||||| ||   ||||||||||| ||||| |||||| | ||||| |||||||||||||||||||| |    
T  26959099 ttcaccggtaacctctataaagctctttctgacaaaggaatcgacaccttcattgatgacaaagagcttaaaaaaggggatgaaatcacaccttcgcttc 26959198  T
Q  187 tc-aagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttc 250  Q
    || |||||||||||| |||| || ||||||||| | || |||||||| || ||||||||||||||    
T  26959199 tcaaagagcattgaagactcgaggattgccattatcgttttctctaaggaatatgcttcttcttc 26959263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 252
Target Start/End: Complemental strand, 27665432 - 27665205
Alignment:
Q  25 tctcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaagg 124  Q
    ||||||||||||||| |||||||| |||| | |||||  ||||  | || |||||||  || |||||||| || |||||||| ||||||| ||| |||||    
T  27665432 tctcttatgatttcaacttcgatgtgttcattagtttcaggggtaccgacactcgatttggtttcaccggtaacctctataaggctctttctgacaaagg 27665333  T
Q  125 agtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagcattgaaaactcaagaattgccattgttgtc 224  Q
    | |||  ||||||||||| |||||||||||||  |  ||||| |||||||||||||| ||||  |||||||||||| | || || ||||||||| || |     
T  27665332 aatccacaccttcattgatgacaaggagcttccaactggtgacgaaatcacaccttcactccggaagagcattgaagaatcgaggattgccattattata 27665233  T
Q  225 ttctctaaagactatgcttcttcttcat 252  Q
    ||||||||  |||||||| |||||||||    
T  27665232 ttctctaagaactatgctacttcttcat 27665205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 24715590 - 24715684
Alignment:
Q  161 aggtgatgaaatcacaccttcgctcctcaagagcattgaaaactcaagaattgccattgttgtcttctctaa---agactatgcttcttcttcat 252  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||| | |||||||||| |||||||||||||   ||||||||||||||||||||    
T  24715590 aggtgatgaaatcacatcttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcat 24715684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 28491740 - 28491682
Alignment:
Q  120 aaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacacc 178  Q
    ||||||||||| || ||||| |||||| |||||||||| |||||||| |||||||||||    
T  28491740 aaaggagtccgtactttcatggacgacgaggagcttcaaaaaggtgaagaaatcacacc 28491682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 29804150 - 29804092
Alignment:
Q  120 aaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacacc 178  Q
    ||||||||||| || ||||| |||||| |||||||||| |||||||| |||||||||||    
T  29804150 aaaggagtccgtactttcatggacgacgaggagcttcaaaaaggtgaagaaatcacacc 29804092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 28781076 - 28781177
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    |||||||||||||| || ||||||  ||| || ||| ||  |||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  28781076 accggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 28781175  T
Q  190 ag 191  Q
    ||    
T  28781176 ag 28781177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 29679795 - 29679704
Alignment:
Q  87 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacacc 178  Q
    ||||| ||||| ||||  |||||||||  ||| ||||||||| |||| ||||| || ||| || | ||||||||||| ||||||||||||||    
T  29679795 ttcactggcaacctctggaaagctcttgatgacaaaggagtcagaactttcatggatgacgagaatcttcagaaaggggatgaaatcacacc 29679704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 27698744 - 27698643
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    ||||| |||||||| || ||||||  ||| || ||| |||  ||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  27698744 accggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 27698645  T
Q  190 ag 191  Q
    ||    
T  27698644 ag 27698643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 27718629 - 27718528
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    ||||| |||||||| || ||||||  ||| || ||| |||  ||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  27718629 accggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 27718530  T
Q  190 ag 191  Q
    ||    
T  27718529 ag 27718528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 27725095 - 27724994
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    ||||| |||||||| || ||||||  ||| || ||| |||  ||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  27725095 accggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 27724996  T
Q  190 ag 191  Q
    ||    
T  27724995 ag 27724994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 28098613 - 28098532
Alignment:
Q  96 aatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacac 177  Q
    |||||||| ||||||||||||||   ||||||||| |||||||||||| | || || |||||  ||||||||  ||||||||    
T  28098613 aatctctacaaagctctttgtgacggaggagtccgcaccttcattgaccataaagatcttcatgaaggtgatagaatcacac 28098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 28786215 - 28786316
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    ||||| |||||||| || ||||||  ||| || ||| ||  |||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  28786215 accggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 28786314  T
Q  190 ag 191  Q
    ||    
T  28786315 ag 28786316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 28792336 - 28792437
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    ||||| |||||||| || ||||||  ||| || ||| ||  |||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  28792336 accggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 28792435  T
Q  190 ag 191  Q
    ||    
T  28792436 ag 28792437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 252
Target Start/End: Complemental strand, 17993997 - 17993772
Alignment:
Q  27 tcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaaggag 126  Q
    ||||||| |||||||||||||| |||| | |||||  ||||  | ||||||||||  || |||||||| ||||||||||||||||||| ||| || |||     
T  17993997 tcttatggtttcagcttcgatgtgttcattagtttcaggggtaccgatactcgatatggtttcaccggtaatctctataaagctctttctgacaagggaa 17993898  T
Q  127 tccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagcattgaaaactcaagaattgccattgttgtctt 226  Q
    | ||||||||||| || ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| | |||||    
T  17993897 ttcgaaccttcatcgatgacaaagagcttcagagaggtgatgaaatcacaccgtcgctcctcaagagcattgaagactcaagaattgcgattatcgtctt 17993798  T
Q  227 ctctaaagactatgcttcttcttcat 252  Q
    ||| || |||||||||||||||||||    
T  17993797 ctcaaaggactatgcttcttcttcat 17993772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 167 - 66
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    |||||||||||||| || ||||||  ||| || ||| ||  |||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  167 accggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 68  T
Q  190 ag 191  Q
    ||    
T  67 ag 66  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 7462 - 7563
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    |||||||||||||| || ||||||  ||| || ||| ||  |||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  7462 accggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 7561  T
Q  190 ag 191  Q
    ||    
T  7562 ag 7563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 13882 - 13781
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    |||||||||||||| || ||||||  ||| || ||| ||  |||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  13882 accggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 13783  T
Q  190 ag 191  Q
    ||    
T  13782 ag 13781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 3672 - 3571
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    ||||| |||||||| || ||||||  ||| || ||| |||  ||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  3672 accggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 3573  T
Q  190 ag 191  Q
    ||    
T  3572 ag 3571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 14605 - 14504
Alignment:
Q  90 accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca 189  Q
    ||||| |||||||| || ||||||  ||| || ||| |||  ||||||||||| ||||| || ||||| | ||| |||||||||||||| || |||||||    
T  14605 accggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca 14506  T
Q  190 ag 191  Q
    ||    
T  14505 ag 14504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 247
Target Start/End: Original strand, 12588380 - 12588540
Alignment:
Q  87 ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc 186  Q
    ||||| ||||||||| | ||||||||   ||| |||||||| ||||| ||||| || ||||||||| || | ||||| || ||||||||||| || || |    
T  12588380 ttcactggcaatctcaagaaagctctagatgacaaaggagttcgaactttcatggatgacaaggagattaaaaaaggcgaagaaatcacaccatcacttc 12588479  T
Q  187 tcaagagc-attgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttc 247  Q
    |||| ||| |||||| |||| |  || ||||| |||||| |||||||  | |||||||||||    
T  12588480 tcaa-agcaattgaagactccaagatggccatcgttgtcctctctaagaattatgcttcttc 12588540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 241916 - 241789
Alignment:
Q  105 aaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagc-attgaaaac 203  Q
    |||||||||  ||| |||||| | ||||| ||||| || ||||||||||||   |||||||| ||||||||||| || || ||||| ||| |||||| ||    
T  241916 aaagctcttgatgacaaaggaattcgaactttcatggatgacaaggagcttagaaaaggtgaagaaatcacaccatcacttctcaa-agcaattgaagac 241818  T
Q  204 tcaagaattgccattgttgtcttctctaa 232  Q
    || |  || |||||||||||| |||||||    
T  241817 tccatgatggccattgttgtcctctctaa 241789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 5924565 - 5924474
Alignment:
Q  132 accttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagc-attgaaaactcaagaattgccattgttgt 223  Q
    |||||||| |||||| |  | ||||| ||||||||  |||||||||| || || ||||| ||| |||||||| ||||||||||||||||||||    
T  5924565 accttcatcgacgacgatcatcttcaaaaaggtgaccaaatcacaccctcacttctcaa-agctattgaaaattcaagaattgccattgttgt 5924474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University