View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17367_high_21 (Length: 239)

Name: NF17367_high_21
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17367_high_21
NF17367_high_21
[»] chr4 (7 HSPs)
chr4 (21-224)||(4469095-4469298)
chr4 (159-215)||(47680706-47680762)
chr4 (128-206)||(11307316-11307396)
chr4 (118-198)||(11307613-11307695)
chr4 (159-198)||(51681335-51681374)
chr4 (164-215)||(56160770-56160821)
chr4 (159-215)||(8445940-8445996)
[»] chr8 (6 HSPs)
chr8 (123-216)||(5981458-5981553)
chr8 (119-200)||(1409220-1409301)
chr8 (159-216)||(5981750-5981807)
chr8 (154-224)||(36046848-36046918)
chr8 (151-187)||(13758985-13759021)
chr8 (151-187)||(23140563-23140599)
[»] chr1 (2 HSPs)
chr1 (118-217)||(43834537-43834638)
chr1 (159-205)||(26231682-26231728)
[»] chr6 (3 HSPs)
chr6 (119-216)||(7301599-7301699)
chr6 (159-199)||(22612271-22612311)
chr6 (151-187)||(11554343-11554379)
[»] chr5 (1 HSPs)
chr5 (179-216)||(30886438-30886475)
[»] chr3 (3 HSPs)
chr3 (159-216)||(51677597-51677654)
chr3 (161-216)||(53981614-53981669)
chr3 (159-216)||(32201124-32201181)
[»] scaffold0548 (1 HSPs)
scaffold0548 (119-198)||(4102-4183)
[»] chr2 (3 HSPs)
chr2 (160-214)||(19547956-19548010)
chr2 (118-197)||(19548186-19548267)
chr2 (151-187)||(41752933-41752969)
[»] chr7 (1 HSPs)
chr7 (151-187)||(4109583-4109619)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 4469095 - 4469298
Alignment:
Q  21 ggtacaagtataagtgatgtgggttcctcacatttgaggaaatattggatatataagagatgggacgatggtacaagtataagtgatgtgtcttgaagaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  4469095 ggtacaagtataagtgatgtgggttcctcacatttgaggaaatgttggatatataagagatgggacgacggtacaagtataagtgatgtgccttgaagaa 4469194  T
Q  121 atgttgtatatataagagaggggacacacgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtata 220  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  4469195 atgttgtatatataagagaggggacacacgtctaatgtcttaaggttttgggtgaaaatgtgatgtctgagtctcttaattgtcctagacgtttagtata 4469294  T
Q  221 ttgt 224  Q
    ||||    
T  4469295 ttgt 4469298  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 47680706 - 47680762
Alignment:
Q  159 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 215  Q
    |||||||||||||||| | ||||||||||||||||||||| | ||||| ||||||||    
T  47680706 cttaaggttttgggtggagatgtggtgtctaagtctcttattggtcctggacgttta 47680762  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 11307396 - 11307316
Alignment:
Q  128 atatataagagaggggacac--acgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcct 206  Q
    ||||||||||||||||||||  |  ||| ||  ||||| |||||||||| | ||||||||||||||||||||||| |||||    
T  11307396 atatataagagaggggacacgtatacctgatgccttaatgttttgggtggagatgtggtgtctaagtctcttagtggtcct 11307316  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 11307695 - 11307613
Alignment:
Q  118 gaaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctctta 198  Q
    ||||||||| |||||| ||||||||||||||    ||| || |||||| |||||||||| | ||||||||||||||| |||||    
T  11307695 gaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtctaagtgtctta 11307613  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 51681335 - 51681374
Alignment:
Q  159 cttaaggttttgggtgaaaatgtggtgtctaagtctctta 198  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  51681335 cttaaggttttgggtggagatgtggtgtctaagtctctta 51681374  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 56160770 - 56160821
Alignment:
Q  164 ggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 215  Q
    ||||||||||| |||| |||||||||||||||||||| ||| |||| |||||    
T  56160770 ggttttgggtggaaatatggtgtctaagtctcttagtggtcttagatgttta 56160821  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 8445940 - 8445996
Alignment:
Q  159 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 215  Q
    ||||||||||| |||| | |||||| |||||||||||||| ||||||| || |||||    
T  8445940 cttaaggttttaggtggagatgtggcgtctaagtctcttatttgtcctggaagttta 8445996  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 5981553 - 5981458
Alignment:
Q  123 gttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 216  Q
    |||| |||||||||||||||||| || |  ||| ||  |||||||||||||||| ||||||||||||||||||||||| | || || |||||||||    
T  5981553 gttggatatataagagaggggacccatgtacctgatgccttaaggttttgggtggaaatgtggtgtctaagtctcttattggttctggacgtttag 5981458  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 1409220 - 1409301
Alignment:
Q  119 aaatgttgtatatataagagaggggacacacgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagt 200  Q
    |||||||| ||||||||| |||||||  ||   ||||| ||||||| |||||| |||||||||||||||||||| |||||||    
T  1409220 aaatgttggatatataagggaggggatccatagctaatttcttaagattttggatgaaaatgtggtgtctaagtttcttagt 1409301  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 5981807 - 5981750
Alignment:
Q  159 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 216  Q
    |||||||||||||||| | ||||||||||||||||||||| | ||||| || ||||||    
T  5981807 cttaaggttttgggtggagatgtggtgtctaagtctcttactggtccttgaagtttag 5981750  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 36046918 - 36046848
Alignment:
Q  154 aatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgt 224  Q
    ||||||||||| |||| | |||| ||||||| ||||||| | |||||  ||||||||||||||| ||||||    
T  36046918 aatatcttaagattttagatgaagatgtggtatctaagttttttagtgatcctagacgtttagtctattgt 36046848  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 13758985 - 13759021
Alignment:
Q  151 cctaatatcttaaggttttgggtgaaaatgtggtgtc 187  Q
    |||||| |||||||||||||||| |||||||||||||    
T  13758985 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 13759021  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 23140599 - 23140563
Alignment:
Q  151 cctaatatcttaaggttttgggtgaaaatgtggtgtc 187  Q
    |||||| |||||||||||||||| |||||||||||||    
T  23140599 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 23140563  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 43834537 - 43834638
Alignment:
Q  118 gaaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 215  Q
    ||||||||| |||||||||||||||||| ||    |||||| |||||||||||| | || | |||||| |||||||||||||  | ||||||||||||||    
T  43834537 gaaatgttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgtggcgtctaagtctcttgatggtcctagacgttta 43834636  T
Q  216 gt 217  Q
    ||    
T  43834637 gt 43834638  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 26231728 - 26231682
Alignment:
Q  159 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcc 205  Q
    |||||||||||||||| | |||||||||| |||||||||||| ||||    
T  26231728 cttaaggttttgggtggagatgtggtgtccaagtctcttagtggtcc 26231682  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 7301699 - 7301599
Alignment:
Q  119 aaatgttgtatatataagagaggggacacacg--cctaatatcttaaggtttt-gggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 215  Q
    |||||||  |||||||| ||||||||||||    ||||||||||||||||||| |||| | | | |||||||||||||||||||| |||||||| |||||    
T  7301699 aaatgttagatatataaaagaggggacacatatacctaatatcttaaggtttttgggtaagagtttggtgtctaagtctcttagtggtcctagaggttta 7301600  T
Q  216 g 216  Q
    |    
T  7301599 g 7301599  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 22612311 - 22612271
Alignment:
Q  159 cttaaggttttgggtgaaaatgtggtgtctaagtctcttag 199  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  22612311 cttaaggttttgggtgtagatgtggtgtctaagtctcttag 22612271  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 11554379 - 11554343
Alignment:
Q  151 cctaatatcttaaggttttgggtgaaaatgtggtgtc 187  Q
    |||||| |||||||||||||||| |||||||||||||    
T  11554379 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 11554343  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 30886475 - 30886438
Alignment:
Q  179 tgtggtgtctaagtctcttagttgtcctagacgtttag 216  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30886475 tgtggtgtctaagtctcttagtggtcctagacgtttag 30886438  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 51677597 - 51677654
Alignment:
Q  159 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 216  Q
    ||||||||||| | || | ||||| ||||||||||||||||| |||||||||||||||    
T  51677597 cttaaggtttttgatggagatgtgatgtctaagtctcttagtagtcctagacgtttag 51677654  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 53981614 - 53981669
Alignment:
Q  161 taaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 216  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||| | |||||||||    
T  53981614 taaggttttgggtggagatgtggtgtctaagtcttttagtggtcttggacgtttag 53981669  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 32201124 - 32201181
Alignment:
Q  159 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 216  Q
    |||||| ||||||||| | ||||||||||||||| ||||||| |||||  ||||||||    
T  32201124 cttaagattttgggtggagatgtggtgtctaagtttcttagtggtcctgaacgtttag 32201181  T

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Target: scaffold0548 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 4183 - 4102
Alignment:
Q  119 aaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctctta 198  Q
    |||||||| |||||| ||||||||||||||    ||| || |||||| |||||||||| | ||||||||||||||| |||||    
T  4183 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtctaagtgtctta 4102  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 19547956 - 19548010
Alignment:
Q  160 ttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttt 214  Q
    ||||||||||| ||| ||||||||||||||| | ||||||| ||||| |||||||    
T  19547956 ttaaggttttgtgtggaaatgtggtgtctaaatatcttagtggtcctggacgttt 19548010  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 19548186 - 19548267
Alignment:
Q  118 gaaatgttgtatatataagagaggggacacacgc--ctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctctt 197  Q
    ||||||||| |||||||||||||| ||| ||     ||||| ||||||||||||||||| | ||||||||| ||||||||||    
T  19548186 gaaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgtataagtctctt 19548267  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 41752969 - 41752933
Alignment:
Q  151 cctaatatcttaaggttttgggtgaaaatgtggtgtc 187  Q
    |||||| |||||||||||||||| |||||||||||||    
T  41752969 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 41752933  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 4109619 - 4109583
Alignment:
Q  151 cctaatatcttaaggttttgggtgaaaatgtggtgtc 187  Q
    |||||| | ||||||||||||||||||||||||||||    
T  4109619 cctaatgttttaaggttttgggtgaaaatgtggtgtc 4109583  T

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