View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17367_high_5 (Length: 421)
Name: NF17367_high_5
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17367_high_5 |
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| [»] chr2 (10 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 111 - 421
Target Start/End: Complemental strand, 39417161 - 39416849
Alignment:
| Q |
111 |
atcttcatgctatttctcaataaaatcaatatcatgcaatgttagcgctactaaatctgtttttatatgttcaaactttataaagtttacatannnnnnn |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39417161 |
atcttcatgctatttctcaataaaatcaatatcatgcaatgttagcgctactaaatctgtttttatatgttcaaactttataaagtttacattttttttt |
39417062 |
T |
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| Q |
211 |
-acatgcccattgttttatgattaaaa-tttgaatgtccattttctagggatttttcgtttggttaaaattttactaatggaaatataatttattatttt |
308 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39417061 |
tacatgcccattgttttatgattaaaactttgaatgtccattttctagggatttttcgtttggttaaaattttactaatggaaatataatttattatttt |
39416962 |
T |
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| Q |
309 |
atttaagtcctagaaatttttcactccctaaaagttgaaggttttgtcttttcttcacaggattttgaggtgtaaatttaatatccgagagtttacagtt |
408 |
Q |
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| T |
39416961 |
attaaagtcctagaaatttttcactccctaaaagttgaaggttttgtcttttcttcacaggattttgaggtgtaaatttaatatccgagagtttacagtt |
39416862 |
T |
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| Q |
409 |
tctatagttcaat |
421 |
Q |
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| T |
39416861 |
tctatagttcaat |
39416849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 39160413 - 39160501
Alignment:
| Q |
114 |
ttcatgctatttctcaataaaatcaatatcatgcaatgttagcgctactaaatctgtttttatatgttcaaactttataaagtttacat |
202 |
Q |
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| T |
39160413 |
ttcatgctttttctcaacaaaatcaatatcatgcaatgttagacctactaaatgtgtttttatatgttcaaaccttatatagtttacat |
39160501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 39208781 - 39208693
Alignment:
| Q |
114 |
ttcatgctatttctcaataaaatcaatatcatgcaatgttagcgctactaaatctgtttttatatgttcaaactttataaagtttacat |
202 |
Q |
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| T |
39208781 |
ttcatgctttttctcaacaaaatcaatatcatgcaatgttagacctactaaatgtgtttttatatgttcaaaccttatatagtttacat |
39208693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 39210045 - 39209957
Alignment:
| Q |
114 |
ttcatgctatttctcaataaaatcaatatcatgcaatgttagcgctactaaatctgtttttatatgttcaaactttataaagtttacat |
202 |
Q |
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| T |
39210045 |
ttcatgctttttctcaacaaaatcaatatcatgcaatgttagacctactcaatgtgtttttatatgttcaaactttagaaagtttacat |
39209957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 39392449 - 39392365
Alignment:
| Q |
114 |
ttcatgctatttctcaataaaatcaatatcatgcaatgttagcgctactaaatctgtttttatatgttcaaactttataaagttt |
198 |
Q |
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| T |
39392449 |
ttcatgctctttctcaacaaaattaataccatgcaatgttagacctactaaatatgtttttatatgttcaaactttataaagttt |
39392365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 39417253 - 39417202
Alignment:
| Q |
20 |
tcaccgtcgtcggcgtggatcacaaactgaactaattggtaaaaatctccac |
71 |
Q |
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| T |
39417253 |
tcaccgtcgtcggcgtggatcacaaactgaactaattggtaaaaatctccac |
39417202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 39488817 - 39488754
Alignment:
| Q |
138 |
aatatcatgcaatgttagcgctactaaatctgtttttatatgttcaaactttataaagtttacat |
202 |
Q |
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| T |
39488817 |
aatatcatgcaatgttagagctactgaatgtgtttttatatgttcaaacttta-aaagtttacat |
39488754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 39457637 - 39457682
Alignment:
| Q |
336 |
ctaaaagttgaaggttttgtcttttcttcacaggattttgaggtgt |
381 |
Q |
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| T |
39457637 |
ctaaaagttgaagcttttatcttttcttcccaggattttgaggtgt |
39457682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 39475002 - 39474951
Alignment:
| Q |
147 |
caatgttagcgctactaaatctgtttttatatgttcaaactttataaagttt |
198 |
Q |
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| T |
39475002 |
caatgttagacctgctaaatgtctttttatatgttcaaactttataaagttt |
39474951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 39457436 - 39457498
Alignment:
| Q |
114 |
ttcatgctatttctcaataaaatcaatatcatgcaatgttagcgctactaaatctgtttttat |
176 |
Q |
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| T |
39457436 |
ttcatgctatttgtcaagaatatcaatatcatgcaatgttagagcccctaaatgtgtatttat |
39457498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 33558932 - 33559010
Alignment:
| Q |
114 |
ttcatgctatttctcaataaaatcaatatcatgcaatg----ttagcgctactaaatctgtttttatatgttcaaactt |
188 |
Q |
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||||||||||||||||| || ||||||||||| ||||| |||| |||||||||| |||||||||||||| |||||| |
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| T |
33558932 |
ttcatgctatttctcaacaagatcaatatcattcaatgaatgttagagctactaaatgtgtttttatatgtttaaactt |
33559010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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