View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17367_low_15 (Length: 283)
Name: NF17367_low_15
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17367_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 46669236 - 46669503
Alignment:
| Q |
1 |
ccaataatcttccaccacctcccaacaacaaaccataaggtctatcaggtgaaccagaataaacctcattcacatactgtttcttagcaaacaaagcagt |
100 |
Q |
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| T |
46669236 |
ccaataatcttccaccacctcccaacaacaaaccataagttctatcaggtgaaccagaataaacctcattcacatactgtttcttagcaaacaaagcagt |
46669335 |
T |
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| Q |
101 |
gaaaataatcccccaagtaccacaaccaccatgaagttgtgcagcttcaagaggatcatcatagtgaaatttttcagctaacaaattgcatccaatcaac |
200 |
Q |
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| T |
46669336 |
gaaaataatcccccaagtaccacaaccaccatgaagttgtgcagcttcaagaggatcatcatagtgaaatttctcagctaacaaattgcatccaatcaac |
46669435 |
T |
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| Q |
201 |
acccaagcagcaacaaaaccacaaataatagcagcccatggatccacaacagaacaccctgcagttat |
268 |
Q |
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| T |
46669436 |
acccaagcagcaacaaaaccacaaataatagcagcccatggatccacaacagaacaccctgcagttat |
46669503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 39641039 - 39641306
Alignment:
| Q |
1 |
ccaataatcttccaccacctcccaacaacaaaccataaggtctatcaggtgaaccagaataaacctcattcacatactgtttcttagcaaacaaagcagt |
100 |
Q |
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| T |
39641039 |
ccaataatcttccaccacctcccaacaacaaaccataaggcctatcaggagaaccgccataaacttccttaacatattgtttcttagcaaacaaagcagt |
39641138 |
T |
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| Q |
101 |
gaaaataatcccccaagtaccacaaccaccatgaagttgtgcagcttcaagaggatcatcatagtgaaatttttcagctaacaaattgcatccaatcaac |
200 |
Q |
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| T |
39641139 |
gaaaataatcccccaagtaccacacccaccatgaagttgtgcagcttcaagaggatcatcatattgaaacttctcagctaacatattgcatccaatcaaa |
39641238 |
T |
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| Q |
201 |
acccaagcagcaacaaaaccacaaataatagcagcccatggatccacaacagaacaccctgcagttat |
268 |
Q |
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| T |
39641239 |
acccaagcggcaatgaatccacaaataattgcagcccaaggatcaacaacagaacaacctgcagttat |
39641306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 35415489 - 35415565
Alignment:
| Q |
192 |
ccaatcaacacccaagcagcaacaaaaccacaaataatagcagcccatggatccacaacagaacaccctgcagttat |
268 |
Q |
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|||||||| ||||| ||||||||||| ||||| | ||| || |||||||| |||||||||||||| || |||||||| |
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| T |
35415489 |
ccaatcaaaacccacgcagcaacaaacccacacacaatcgcggcccatggttccacaacagaacaacccgcagttat |
35415565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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