View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17367_low_16 (Length: 271)
Name: NF17367_low_16
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17367_low_16 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 6308297 - 6308053
Alignment:
| Q |
9 |
gattattctattcaagtcatagtatggaatcaaggcggtcaattgaatttaagggacttaaatcatattaaaagatgaggt--attagagtgaaaggaaa |
106 |
Q |
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| T |
6308297 |
gatttttctattcaagtcatagtatggaatcaaggcaatcaattgaatttaagggacttaaatcatattaaaagaggaggtgtattagagtgaaaggaaa |
6308198 |
T |
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| Q |
107 |
taagagtgaggtatgcataaccggtaatggtttcttgtgatttagttgataataaagtcagcctggcctctaatggaaatcaaagggtaaatgtggggca |
206 |
Q |
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| T |
6308197 |
taagagtgaggtatgcataaccggtaatggttttttgtgattta-ttgataataaagtcagcctggcctctaatggaaatcaaagggtaaatgtggggca |
6308099 |
T |
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| Q |
207 |
ggtagttactcaactaataagaatacaacgggttatatttgatcac |
252 |
Q |
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| T |
6308098 |
ggtagttactcaactaataagaatacaacgggttatatttgatcac |
6308053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 107529 - 107375
Alignment:
| Q |
9 |
gattattctattcaagtcatagtatggaatcaaggcggtcaattgaatttaagggacttaaa-tcatattaaaagatgaggtattagagtgaaaggaaat |
107 |
Q |
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|||| |||||||||||| |||||||||||||||||| |||||||| ||||||||||||||| ||||||||| || |||||||||||||||||| ||||| |
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| T |
107529 |
gatttttctattcaagttatagtatggaatcaaggcaatcaattgattttaagggacttaaaatcatattaagag-tgaggtattagagtgaaaagaaat |
107431 |
T |
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| Q |
108 |
aagagtgaggtatgcataaccggtaatggtttcttgtgatttagttgataataaagt |
164 |
Q |
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| T |
107430 |
aaaagtgaggtatgcacaaccgctaatggcttcttgtgattta-ttgagaataaagt |
107375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 29451348 - 29451237
Alignment:
| Q |
9 |
gattattctattcaagtcatagtatggaatcaaggcggtcaattgaatttaagggacttaaa-tcatattaaaagatgaggtattagagtgaaaggaaat |
107 |
Q |
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|||| |||||||| |||||||||||||| | ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
29451348 |
gattcttctattccagtcatagtatggagttaaggcaaccaattgattttaagggacttaaaatcatattaaaagatgaggtattagagtgaaagggaat |
29451249 |
T |
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| Q |
108 |
aagagtgaggta |
119 |
Q |
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| T |
29451248 |
aaaagtggggta |
29451237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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