View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17367_low_19 (Length: 257)
Name: NF17367_low_19
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17367_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 43404410 - 43404645
Alignment:
| Q |
1 |
gaaatgacataaaatttatttgtagttaatatcttttcaattaagatagtaagaataaaattgagagaaaaaatgaaaggaattgacacaaacgttagtt |
100 |
Q |
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| T |
43404410 |
gaaatgacataaaatttatttgtagttaatatcttttcaattaagataataagaataaaattgagagaaaaaatgaaagcaattgacacaaacgttagat |
43404509 |
T |
|
| Q |
101 |
gaagcaattatcaaaaaacactaagctagtaaaacccaataactccttaaaaaattattatcaaataggttttggtcatatgaactcataagttataagc |
200 |
Q |
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| T |
43404510 |
gaagtaattatcaaaaaacactaagctggtaaaacccaataactccttaaaaaattattatcaaataggttttggtcatatgaactcataagttataagc |
43404609 |
T |
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| Q |
201 |
tcgaaaattaatattggcaaatagagcctaaacgtt |
236 |
Q |
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| T |
43404610 |
tcgaaaattaatattggcaaacagagcctaaacgtt |
43404645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 32474827 - 32474869
Alignment:
| Q |
34 |
ttttcaattaagatagtaagaataaaattgagagaaaaaatga |
76 |
Q |
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| T |
32474827 |
ttttcaattaagataatagggataaaattgagagaaaaaatga |
32474869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 6909717 - 6909680
Alignment:
| Q |
39 |
aattaagatagtaagaataaaattgagagaaaaaatga |
76 |
Q |
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| T |
6909717 |
aattaagataacaagaataaaattgagagaaaaaatga |
6909680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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