View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17367_low_2 (Length: 461)
Name: NF17367_low_2
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17367_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 41840526 - 41840100
Alignment:
| Q |
18 |
gaaatatataacgtattttatcatttcacacagtttaagaaaattgtaataataagagaaagaaaaatgatattttaactaatttggcccaacannnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41840526 |
gaaatatataacgtattttatcatttcacacagtttaagaaaattgtaataataagagaaagaaaaatgatattttgactaatttggcccaacatttttt |
41840427 |
T |
|
| Q |
118 |
n-gtaaatttcacttttaaataatgattgattttcttgtttcacgacaaacatctaaaaatcggaaaattggtgctactagttgatcgcgttttttatac |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41840426 |
ttgtaaatttcacttataaataatgattgattttcttgtttcacggcaaacatctaaaatttggaaaattggtgctactagttgatcgcgttttttatac |
41840327 |
T |
|
| Q |
217 |
tccttccgttctaaaatatatgttgcagtcaaccactacacacaacatttgacttttccctatctccccatcttacaaactgaaataaccttgtgtggtt |
316 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41840326 |
tccttccgttctaaaatatatattgcagtcaaccactgcgcacaacatttgacttttccctatctccccatcttacaaactgaaataaccttgtgtggtt |
41840227 |
T |
|
| Q |
317 |
ttgcatattaacaatatagatctaattcttggtttctacatacatttgctcaatccacaacttcactatcaaacagcttaaattggttggcatcaagaac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41840226 |
ttgcatattaacaatatagatctaattcttggtttctacatacatttgctcaatccacaacttcactatcaaacagcttaaattggttggcatcaagaac |
41840127 |
T |
|
| Q |
417 |
taatttccttatggacgagaatgcacc |
443 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41840126 |
taatttccttatggacgagaatgcacc |
41840100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 362 - 441
Target Start/End: Complemental strand, 2841813 - 2841734
Alignment:
| Q |
362 |
ttgctcaatccacaacttcactatcaaacagcttaaattggttggcatcaagaactaatttccttatggacgagaatgca |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
2841813 |
ttgctcaatccacaacttcactatcaaacaacttaaattggttggcatcaagaattaatttccttatgcacgagaatgca |
2841734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 17510286 - 17510362
Alignment:
| Q |
121 |
aaatttcacttttaaataatgattgattttcttgtttcacgacaaacatctaaaaatcggaaaattggtgctactag |
197 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||| |||| |
|
|
| T |
17510286 |
aaatttcacttttaaataatgattggttttcttgtttcaccacaaacatctaaaagttggaaaattggtgctgctag |
17510362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University