View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17367_low_21 (Length: 247)

Name: NF17367_low_21

Description: NF17367

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17367_low_21

[»] chr8 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 194; E-Value: 1e-105

Query Start/End: Original strand, 14 - 211

Target Start/End: Complemental strand, 1800939 - 1800742

Alignment:

Q	14	aaggtgggttaaagaagataaaaaataaagaggtttgatagttcatctgatttgagttgagcaataacaaaacagaacgaaatattaaatataatctaac	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1800939	aaggtgggttaaagaagataaaaaataaagaggtttgatagttcatctgatttgagttgagcaataacaaaacagaacgaaatattaaatataatctaac	1800840	T

Q	114	aaaatgtgtacaccaaatgataacccattttgacattttctcttgacatcgttagcaccaaatgtgtacaccaagttagcttaacatgccatgttaca	211	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1800839	aaaatgtgtacaccaagtgataacccattttgacattttctcttgacatcgttagcaccaaatgtgtacaccaagttagcttaacatgccatgttaca	1800742	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 140 - 205

Target Start/End: Original strand, 25729670 - 25729734

Alignment:

Q	140	attttgacattttctcttgacatcgttagcaccaaatgtgtacaccaagttagcttaacatgccat	205	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|
T	25729670	attttgatattttctcttgagaccactagcaccaaatgtgtac-ccaagttaccttaacataccat	25729734	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]