View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17367_low_5 (Length: 427)
Name: NF17367_low_5
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17367_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 52584015 - 52583650
Alignment:
| Q |
8 |
ggagtagcataggtgctagaacactctcctctgagctcaaagcagagttgaggattcatggacatttattggctgacaaacatgaacatcaagtcaaaat |
107 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584015 |
ggagtagaacaggtgctagaacactctcctctgagctcaaagcagagttgaggattcatggacatttattggctgacaaacatgaacatcaagtcaaaat |
52583916 |
T |
|
| Q |
108 |
tgcaaagctcatttcattgttggatgaggttggttggtcttct-----cttcctgattttatgttcactagtactaataaagaaaattgcatcatacttg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583915 |
tgcaaagctcatttcattgttggatgaggttggttggtcttctcttctcttcctgattttatgttcactagtactaataaagaaaattgcatcatacttg |
52583816 |
T |
|
| Q |
203 |
agtagtattcg------------aattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatcaaattgttttggtat |
290 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583815 |
agtagtattcgaataaaaagcttaattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatcaaattgttttggtat |
52583716 |
T |
|
| Q |
291 |
gaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583715 |
gaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
52583650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 52583443 - 52583398
Alignment:
| Q |
363 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583443 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactacc |
52583398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 19395216 - 19395153
Alignment:
| Q |
265 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatt |
329 |
Q |
| |
|
|||| |||||||||||||||| |||| | ||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaatt |
19395153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
230 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
272 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
230 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
272 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 5939015 - 5939051
Alignment:
| Q |
237 |
ataagtgtttatgtataaattatttttaaaacaaaaa |
273 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
5939015 |
ataagtgtttatgtataagttatttttataacaaaaa |
5939051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University