View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17367_low_7 (Length: 396)

Name: NF17367_low_7
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17367_low_7
NF17367_low_7
[»] chr2 (10 HSPs)
chr2 (1-389)||(44623716-44624104)
chr2 (57-354)||(44614563-44614857)
chr2 (204-310)||(39473637-39473743)
chr2 (228-375)||(39458917-39459064)
chr2 (7-94)||(39468345-39468432)
chr2 (5-99)||(39370109-39370203)
chr2 (4-78)||(39459274-39459348)
chr2 (1-94)||(39152581-39152674)
chr2 (192-277)||(39389332-39389417)
chr2 (245-278)||(39390708-39390741)
[»] chr8 (2 HSPs)
chr8 (245-389)||(40347363-40347507)
chr8 (5-94)||(45342056-45342145)
[»] chr6 (1 HSPs)
chr6 (4-94)||(16113305-16113395)
[»] scaffold0250 (1 HSPs)
scaffold0250 (105-154)||(4326-4375)
[»] chr3 (1 HSPs)
chr3 (185-238)||(51574601-51574654)


Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 44624104 - 44623716
Alignment:
Q  1 tctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624104 tctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgag 44624005  T
Q  101 tgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44624004 tgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttga 44623905  T
Q  201 actttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44623904 actttaaattcctcttcttttgattggaactccatcactcttatttcgaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttt 44623805  T
Q  301 tttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattcttttca 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44623804 tttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattcttttca 44623716  T

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Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 57 - 354
Target Start/End: Complemental strand, 44614857 - 44614563
Alignment:
Q  57 agatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcattttta 156  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||| |||||||||||||     
T  44614857 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 44614758  T
Q  157 cttcgaatttctcttcctttgcttcaaaaagtactttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattcctt 256  Q
    |||| |||| |||| |||||| |||||| | |   |||||| |  ||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||    
T  44614757 cttcaaattcctctacctttgtttcaaacatt---ttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattcctt 44614661  T
Q  257 ttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaa 354  Q
    ||||||||||||||| ||||||||||| |||||||||| | | ||||||||||||||||||  ||  |||||||| ||||||||||||| ||| ||||    
T  44614660 ttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtcctccaccaggccttcaaattcacccttttcagactcaa 44614563  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 310
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
Q  204 ttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttttt 303  Q
    ||||||||||| |||||||| ||||||||| |||||  ||  | ||||| ||||||||||||||| | ||||||  || | |||||||||| | | ||||    
T  39473637 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt 39473736  T
Q  304 ctgattc 310  Q
    |||||||    
T  39473737 ctgattc 39473743  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 375
Target Start/End: Complemental strand, 39459064 - 39458917
Alignment:
Q  228 aactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggc 327  Q
    |||||| |||||  || |||||||| ||||||||||||||| | ||||||  | |  |||||||||| | | ||||||||||| || ||| |||   |||    
T  39459064 aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc 39458965  T
Q  328 cttccaattcaccctttttagattcaaactcatttacttgaccatcaa 375  Q
    |||| |||||| ||| ||| ||||||| ||| ||| || |||||||||    
T  39458964 cttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaa 39458917  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 39468432 - 39468345
Alignment:
Q  7 tcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaa 94  Q
    |||||||| ||||||| | ||||||  |||| ||| ||  |||||||| ||| ||||||| |||| |||||||||| |||||||||||    
T  39468432 tcaactcaggctccttcgcttgtccgtcaaacttaatcgactttgactgaagttccttgacttgtccttcaatctgcttctcttttaa 39468345  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 39370203 - 39370109
Alignment:
Q  5 tgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcga 99  Q
    |||| ||||| ||| |||| |||||||| | || ||||||| |||||||| |||| |||||| ||||  | ||| ||| ||||||||||||||||    
T  39370203 tgtcgactcaggcttctttagttgtccatccaatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctcttttaattcga 39370109  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 39459348 - 39459274
Alignment:
Q  4 ctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaa 78  Q
    ||||||||||| |||||||   ||||||| |||||||||| ||||||||||   ||||||||| |||| ||||||    
T  39459348 ctgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaa 39459274  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 39152674 - 39152581
Alignment:
Q  1 tctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaa 94  Q
    |||||||||| ||| ||||||| |  |||||| ||   ||||| |||||||||| ||||||||||  || |||||||| ||| |||||||||||    
T  39152674 tctctgtcaaatcatgctccttcgactgtccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaa 39152581  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 39389332 - 39389417
Alignment:
Q  192 ttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactcctt 277  Q
    ||||||||  ||| ||||||||| ||||||||||| |||||| ||||| ||| ||| |||| ||  |||||||| |||| ||||||    
T  39389332 ttcacttgttcttcaaattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctcttttgactcaagctcctt 39389417  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 39390708 - 39390741
Alignment:
Q  245 ttcaaattccttttcttttgattcaaactccttt 278  Q
    |||||||||||| |||||||||||||||||||||    
T  39390708 ttcaaattccttctcttttgattcaaactccttt 39390741  T

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Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 245 - 389
Target Start/End: Complemental strand, 40347507 - 40347363
Alignment:
Q  245 ttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcacccttt 344  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| |||  || | ||| ||||||||||||    
T  40347507 ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt 40347408  T
Q  345 ttagattcaaactcatttacttgaccatcaagtatattcttttca 389  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  40347407 ttagattcaaactcatttactcgaccatcaagtatattcttttca 40347363  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 45342145 - 45342056
Alignment:
Q  5 tgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaa 94  Q
    |||||||||||||||||||  ||||||| | ||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||    
T  45342145 tgtcaactcaagctcctttatttgtccatccaaattattcagctttgactcaaggtccttgatttgcacttcaaactgattctcttttaa 45342056  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 16113395 - 16113305
Alignment:
Q  4 ctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaa 94  Q
    |||| |||||| |||||||  ||||||| ||||| |  ||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||    
T  16113395 ctgttaactcaggctccttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaa 16113305  T

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Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 4375 - 4326
Alignment:
Q  105 ttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttt 154  Q
    |||||| ||||||||||||||||||||||  |||||||||||||| ||||    
T  4375 ttgacaaatttgagattgtcctcaacttggctttcaaattgctgcttttt 4326  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 51574654 - 51574601
Alignment:
Q  185 aagtactttcacttggactttaaattcctcttcttttgattggaactccatcac 238  Q
    |||||| ||||||||||||||||| ||||| ||||||||||  |||||| ||||    
T  51574654 aagtaccttcacttggactttaaagtcctcctcttttgattcaaactccttcac 51574601  T

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