View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17367_low_8 (Length: 391)

Name: NF17367_low_8
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17367_low_8
NF17367_low_8
[»] chr4 (7 HSPs)
chr4 (16-382)||(31204000-31204368)
chr4 (46-332)||(31216660-31216944)
chr4 (16-71)||(46393225-46393280)
chr4 (212-248)||(31204541-31204577)
chr4 (20-89)||(34118888-34118955)
chr4 (16-72)||(47388545-47388601)
chr4 (16-72)||(55322944-55323000)
[»] chr2 (6 HSPs)
chr2 (16-72)||(2080530-2080586)
chr2 (16-72)||(44966025-44966081)
chr2 (20-72)||(40711174-40711226)
chr2 (16-72)||(41464085-41464141)
chr2 (20-72)||(41542760-41542812)
chr2 (16-72)||(44022164-44022220)
[»] chr5 (5 HSPs)
chr5 (140-186)||(17595759-17595805)
chr5 (16-70)||(1352852-1352906)
chr5 (16-70)||(25983132-25983186)
chr5 (16-70)||(36527495-36527549)
chr5 (20-69)||(8234078-8234127)
[»] chr1 (2 HSPs)
chr1 (16-72)||(43949163-43949219)
chr1 (15-72)||(29587125-29587182)
[»] chr7 (4 HSPs)
chr7 (140-186)||(14727684-14727730)
chr7 (20-72)||(17354445-17354497)
chr7 (16-72)||(36827811-36827867)
chr7 (16-72)||(37828420-37828476)
[»] scaffold0006 (1 HSPs)
scaffold0006 (20-72)||(50604-50656)
[»] chr6 (3 HSPs)
chr6 (16-72)||(11842267-11842323)
chr6 (16-69)||(24547989-24548042)
chr6 (16-72)||(9318796-9318852)
[»] chr3 (2 HSPs)
chr3 (16-72)||(53287486-53287542)
chr3 (16-99)||(32733694-32733779)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 31204368 - 31204000
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgccgttggtaacactacccttatattatttgcatacacataatatt 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||    
T  31204368 attgaatgcacacaatttaaaagaatattatttcttttgggtttcttaacatgtgcccttgttaacaatacccttatattatttgcatacacataatatt 31204269  T
Q  116 ggatagcattgtgcagagttaaaat------aatgatttacgaagttgtaagaattatcaactagattaattgttcactggttaagcatcattgtaatca 209  Q
    ||||| ||||| | | |||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  31204268 ggataacattgcgtatagttaaaatcttcagaatgatttacgaagttgtaagaattatcaactagattaattgttcactggttaagcatcattgtaacga 31204169  T
Q  210 actccaaaaatcgtattcccaagttaagcatcatccataggacttaggattcatccttagctgttaaactatcaagataaaccataccaagtttctttct 309  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||||||||||||||||||    
T  31204168 actccagaaatcgtattcccaagttaagcatcatccataggacttaggattcatttttagcggtaaaactatcaagataaaccataccaagtttctttct 31204069  T
Q  310 ttctttcttctatacatcacattttaaatatagttagttaccttggtaattgttatttccccatgtcctccta 382  Q
    |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31204068 t----tcttctatacatcacattttaaatatagttagttaccttggtaattgttatttccccatgtcctccta 31204000  T

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Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 46 - 332
Target Start/End: Complemental strand, 31216944 - 31216660
Alignment:
Q  46 tttcttttgggtttcttaacatgtgccgttggtaacactacccttatattatttgcatac-acataatattggatagcattgtgcagagttaaaat---- 140  Q
    |||||||||||||||||||||||||||  |  ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||        
T  31216944 tttcttttgggtttcttaacatgtgcccgt--taacactacacttatattatttgcataccacataatattggatagcattgtgtagagttaaaatcttc 31216847  T
Q  141 --aatgatttacgaagttgtaagaattatcaactagattaattgttcactggttaagcatcattgtaatcaactccaaaaatcgtattcccaagttaagc 238  Q
      |||||||||||||||||||||||||||||| ||||||   |||||||| ||||||||||||||||||||| |||| |||| |||||||||||||||||    
T  31216846 agaatgatttacgaagttgtaagaattatcaagtagatt---tgttcactagttaagcatcattgtaatcaa-tccagaaatggtattcccaagttaagc 31216751  T
Q  239 atcatccataggacttaggattcatccttagctgttaaactatcaagataaaccataccaagtttctttctttctttcttctatacatcacatt 332  Q
    |||||| ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||    
T  31216750 atcatctataggacttaggattcatccttagcagtaaaactatcgagataaaccataccaagt---tttctttctttcttctatacatcacatt 31216660  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 46393225 - 46393280
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgc 71  Q
    |||||||||||||||||| | ||||||||  ||||||||| |||||||||||||||    
T  46393225 attgaatgcacacaattttagagaatatttattcttttggttttcttaacatgtgc 46393280  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 31204541 - 31204577
Alignment:
Q  212 tccaaaaatcgtattcccaagttaagcatcatccata 248  Q
    |||| ||||||||||||||||||||||||||||||||    
T  31204541 tccagaaatcgtattcccaagttaagcatcatccata 31204577  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 34118955 - 34118888
Alignment:
Q  20 aatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgccgttggtaacactaccct 89  Q
    |||||||| ||||| ||||||||||   |||||| |||||||||||||||||| ||  ||||||||||||    
T  34118955 aatgcacaaaattttatagaatatttactcttttaggtttcttaacatgtgccctt--taacactaccct 34118888  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 47388545 - 47388601
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||| ||| ||||| | ||||||||  ||||||||| ||||||||||||||||    
T  47388545 attgaatgtacaaaattttagagaatatttcttcttttggatttcttaacatgtgcc 47388601  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 55323000 - 55322944
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| ||||| | | ||||||  |||||| |||||||||||||||||||    
T  55323000 attgaatgcacaaaattttaaaaaatatttcttctttggggtttcttaacatgtgcc 55322944  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 2080586 - 2080530
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||    
T  2080586 attgaatgcacaaaatttaagagaatatttttgcttttgggtttcttaacatgtgcc 2080530  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 44966081 - 44966025
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| ||||| | ||||||||  ||||||||||||||||||||||||||    
T  44966081 attgaatgcacaaaattttagagaatatttcttcttttgggtttcttaacatgtgcc 44966025  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 40711226 - 40711174
Alignment:
Q  20 aatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||| ||||| ||| ||||||  |||||||| |||||||||||||||||    
T  40711226 aatgcacaaaattttatacaatatttcttcttttgtgtttcttaacatgtgcc 40711174  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 41464141 - 41464085
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| |||| || |||||||| || ||||||| ||| ||||||||||||    
T  41464141 attgaatgcacaaaattcaagagaatatttttacttttggatttattaacatgtgcc 41464085  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 41542812 - 41542760
Alignment:
Q  20 aatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||| ||||| | ||||||||  |||||||| |||||||||||||||||    
T  41542812 aatgcacaaaattttagagaatatttcttcttttgagtttcttaacatgtgcc 41542760  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 44022220 - 44022164
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| ||||| |  |||||||| ||||||| ||||||||| ||||||||    
T  44022220 attgaatgcacaaaattttagggaatattacttcttttaggtttcttatcatgtgcc 44022164  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 17595759 - 17595805
Alignment:
Q  140 taatgatttacgaagttgtaagaattatcaactagattaattgttca 186  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  17595759 taatgatttacgaagttgtaagaattatcacctagattgattgttca 17595805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 1352852 - 1352906
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtg 70  Q
    ||||||||||||  |||||| |||||||| |||||||| | ||||||||||||||    
T  1352852 attgaatgcacaatatttaagagaatattttttctttttgatttcttaacatgtg 1352906  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 25983132 - 25983186
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtg 70  Q
    |||||||||||| ||||| | ||||||||  ||||||| ||||||||||||||||    
T  25983132 attgaatgcacaaaattttagagaatatttattcttttaggtttcttaacatgtg 25983186  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 36527495 - 36527549
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtg 70  Q
    |||||||||||| ||||| | ||||||||  ||||||||| ||||||||||||||    
T  36527495 attgaatgcacaaaattttagagaatatttattcttttggatttcttaacatgtg 36527549  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 8234078 - 8234127
Alignment:
Q  20 aatgcacacaatttaatagaatattatttcttttgggtttcttaacatgt 69  Q
    |||||||| ||||||| ||||||||  |||||||| ||||||||||||||    
T  8234078 aatgcacaaaatttaagagaatatttcttcttttgagtttcttaacatgt 8234127  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 43949163 - 43949219
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| ||||| | ||||||||  ||||||||||||||||||||||||||    
T  43949163 attgaatgcacaaaattttagagaatatttcttcttttgggtttcttaacatgtgcc 43949219  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 29587182 - 29587125
Alignment:
Q  15 cattgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    ||||||||||||| ||||| | |||| |||  ||||||||||||||||||||||||||    
T  29587182 cattgaatgcacataattttagagaacatttattcttttgggtttcttaacatgtgcc 29587125  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 14727730 - 14727684
Alignment:
Q  140 taatgatttacgaagttgtaagaattatcaactagattaattgttca 186  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  14727730 taatgattaacgaagttgtaagaattatcacctagattgattgttca 14727684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 17354445 - 17354497
Alignment:
Q  20 aatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||| | ||||| ||||||||||  ||||||||||||||||||||||||||    
T  17354445 aatgcataaaattttatagaatatttcttcttttgggtttcttaacatgtgcc 17354497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 36827867 - 36827811
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| ||||| | ||||||||  ||||||| ||||||||||||||||||    
T  36827867 attgaatgcacaaaattttagagaatatttcttcttttaggtttcttaacatgtgcc 36827811  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 37828420 - 37828476
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| ||||||| ||||||||  ||||||| ||||||||||||| ||||    
T  37828420 attgaatgcacaaaatttaagagaatatttcttcttttaggtttcttaacatatgcc 37828476  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 50656 - 50604
Alignment:
Q  20 aatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||| ||||| | ||||||||  ||||||||||||||||||||||||||    
T  50656 aatgcacaaaattttagagaatatttcttcttttgggtttcttaacatgtgcc 50604  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 11842323 - 11842267
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| ||||| | ||||||||  ||||||||| ||||||||||||||||    
T  11842323 attgaatgcacaaaattttagagaatatttcttcttttggatttcttaacatgtgcc 11842267  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 24548042 - 24547989
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgt 69  Q
    |||||||||||| ||||| | |||||||| ||||||||  ||||||||||||||    
T  24548042 attgaatgcacataattttagagaatattttttcttttatgtttcttaacatgt 24547989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 9318796 - 9318852
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| ||||| | ||||||||  ||||||||  ||||||||||||||||    
T  9318796 attgaatgcacaaaattttagagaatatttcttcttttgaatttcttaacatgtgcc 9318852  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 53287486 - 53287542
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgcc 72  Q
    |||||||||||| ||||| | ||||||||  ||||||||| ||||||||||||||||    
T  53287486 attgaatgcacaaaattttagagaatatttcttcttttggatttcttaacatgtgcc 53287542  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 32733694 - 32733779
Alignment:
Q  16 attgaatgcacacaatttaatagaatattatttcttttgggtttcttaacatgtgccgtt--ggtaacactacccttatattattt 99  Q
    |||||||||||| | ||||| | ||||||  || |||||| |||||||||||||||| ||  | |||||||||||||||| |||||    
T  32733694 attgaatgcacaaagtttaagaaaatatttctttttttggatttcttaacatgtgcccttaagttaacactacccttatactattt 32733779  T

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