View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17367_low_9 (Length: 379)
Name: NF17367_low_9
Description: NF17367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17367_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 14751905 - 14752250
Alignment:
| Q |
20 |
gagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcaacgaatatgggtggcacaag |
119 |
Q |
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| T |
14751905 |
gagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcgacgaatatgggtggcacaag |
14752004 |
T |
|
| Q |
120 |
cggtaggaacgtgactttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccca |
219 |
Q |
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| T |
14752005 |
cggtaggaacgtgactttgaacttttcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccca |
14752104 |
T |
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| Q |
220 |
gcgaacatggctagaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatattcttcatggttaaacctagcacatacatttt |
319 |
Q |
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| T |
14752105 |
gcgaacattgctagaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatattcttcgtggttaaacctagcacatacaattt |
14752204 |
T |
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| Q |
320 |
gaaccattgctatgaggtttctatgtgaagatactactcctttgct |
365 |
Q |
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| T |
14752205 |
gaaccattgctatgaggtttctatgtgaagatactactcctttgct |
14752250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 8534268 - 8534504
Alignment:
| Q |
36 |
caccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcaacgaatatgggtggcacaagcggtaggaacgtgact |
135 |
Q |
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| T |
8534268 |
caccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgct |
8534367 |
T |
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| Q |
136 |
ttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacatggcta |
232 |
Q |
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| T |
8534368 |
ctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaa |
8534467 |
T |
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| Q |
233 |
gaccgtatatgtgaaacatgggaattgtgcatatgaa |
269 |
Q |
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| T |
8534468 |
gaccgtatatatgaaacatcggaacagtacatatgaa |
8534504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 8599507 - 8599743
Alignment:
| Q |
36 |
caccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcaacgaatatgggtggcacaagcggtaggaacgtgact |
135 |
Q |
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| T |
8599507 |
caccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgct |
8599606 |
T |
|
| Q |
136 |
ttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacatggcta |
232 |
Q |
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| T |
8599607 |
ctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaa |
8599706 |
T |
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| Q |
233 |
gaccgtatatgtgaaacatgggaattgtgcatatgaa |
269 |
Q |
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| T |
8599707 |
gaccgtatatatgaaacatcggaacagtacatatgaa |
8599743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 36 - 269
Target Start/End: Complemental strand, 8613919 - 8613683
Alignment:
| Q |
36 |
caccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcaacgaatatgggtggcacaagcggtaggaacgtgact |
135 |
Q |
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| T |
8613919 |
caccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagtatagcaaccaatatcgggggcacaagaggtaagaaggttgct |
8613820 |
T |
|
| Q |
136 |
ttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacatggcta |
232 |
Q |
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| T |
8613819 |
ctgaatttttcaatcaatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaa |
8613720 |
T |
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| Q |
233 |
gaccgtatatgtgaaacatgggaattgtgcatatgaa |
269 |
Q |
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| T |
8613719 |
gaccgtatatatgaaacatcggaacagtacatatgaa |
8613683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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