View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17368_high_2 (Length: 410)
Name: NF17368_high_2
Description: NF17368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17368_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 34884280 - 34884678
Alignment:
| Q |
1 |
ttacttcggaatatagtagccaccgagaatccccaataaaccaacaatgcaaactttccctgcaatcctatcgtacctccctcagtgacaagcttagcag |
100 |
Q |
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| T |
34884280 |
ttacttcggaatatagtagccacctagaatcaccaataatccaacaatgcaaactttacctgcaatcctatcttaccaccctcagtgacaagcttagcag |
34884379 |
T |
|
| Q |
101 |
cggtaaccaaccaatggccaggagcatcatgagggccacgtaaaacctcagctgtctcgacgtatttaagtagtttactcgagcgaacaggcacaggtgg |
200 |
Q |
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| T |
34884380 |
ctgtaaccaaccaatggccaggagcatcatgagggccacgtaaaacctcagctgtctcgacgtatttaagtagtttactcgagcgaacaggcacaggtgg |
34884479 |
T |
|
| Q |
201 |
accgttaggataaatgccagagttaagtgcagttggagcctgctttggtggagcagcagcaatactatgctgtgtgaatgaaaatgttgtgctcaaattt |
300 |
Q |
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| T |
34884480 |
accgttaggataaatgccagagttaagtgcagttggagcctgctttggtggagcagcagcaatactatgctgtgtgaatgaaaatgttgtgctcaaattt |
34884579 |
T |
|
| Q |
301 |
gtgaagaaagatgattttctcgaggcctctggtgcggcgccccactccgacttccgtatagtacaattagttatgtgagtaaagagaagacgctgatga |
399 |
Q |
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| T |
34884580 |
gtgaagaaagatgattttcttgaggcctctggtgcggcgccccactccgacttccgtatagtacaattagttatgtgagtaaagagaagacgcagatga |
34884678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 38368169 - 38367977
Alignment:
| Q |
43 |
aacaatgcaaactttccctgcaatcctatcgtacctccctcagtgacaagcttagcagcggtaaccaaccaatggccaggagcatcatgagggccacgta |
142 |
Q |
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| T |
38368169 |
aacaatgcaaacttgacctgtaatccaaccttgccaccctctgtcacaagcttagcagcaataaccaaccaatgcccgggagcatcatgtgggccgcgca |
38368070 |
T |
|
| Q |
143 |
aaacctcagctgtctcgacgtatttaagtagtttactcgagcgaacaggcacaggtggaccgttaggataaatgccagagttaagtgcagttg |
235 |
Q |
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| T |
38368069 |
aaacctcacatgtctccacatatttaagcatcttagcagaacgaacaggcacaggtggaccatttggataaacaccagagtttagtgcagttg |
38367977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 38367923 - 38367859
Alignment:
| Q |
271 |
tgtgtgaatgaaaatgttgtgctcaaatttgtgaagaaagatgattttctcgaggcctctggtgc |
335 |
Q |
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| T |
38367923 |
tgtgtgaatgaaaatgttgtgctcagatttgtgaagaaagtcgattttcttgaagcttctggtgc |
38367859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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