View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17368_low_1 (Length: 555)
Name: NF17368_low_1
Description: NF17368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17368_low_1 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 156 - 541
Target Start/End: Complemental strand, 3209478 - 3209094
Alignment:
| Q |
156 |
gcatcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccatcatcgctgactagttcttgctcttcttcttc |
255 |
Q |
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| T |
3209478 |
gcatcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccgtcatcgctgcctagttcttgctcttcttcttc |
3209379 |
T |
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| Q |
256 |
cgtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcg |
355 |
Q |
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| T |
3209378 |
catgaccgccccctcgtcctcttccgtttcaccatcgacgaccgcttactcctcctcctactcaccactctcaccgtcgtagctcttgtcttcaccggcg |
3209279 |
T |
|
| Q |
356 |
tttggcttaacgtcctcgtgagtcgtgtcggtgctgcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatgaagaagagat |
455 |
Q |
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| T |
3209278 |
tttggcttaacgtcctcgtgagtcgtgttggtgctgcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatgaagaagagat |
3209179 |
T |
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| Q |
456 |
ctttgatggtgatttgctttcagttgttggtggtagctttgataccaaacgttgtttcagcgacggtgaaggagagtcacaatctg |
541 |
Q |
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| T |
3209178 |
ctttgatggtgatttgctttcagttgttggtggtagcttcgataccaaacgttg-ttcagcgacggtgaaggagagtcacaatctg |
3209094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 156 - 541
Target Start/End: Complemental strand, 109313 - 108920
Alignment:
| Q |
156 |
gcatcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccatcatcgctgactagttcttgctcttcttcttc |
255 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
109313 |
gcatcaactacatcattaattttatcccaacttacaactctctcccttcaacctcaacttcctcgccgtcatcgctgcctagttcttgctcttcttcttc |
109214 |
T |
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| Q |
256 |
cgtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcg |
355 |
Q |
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| T |
109213 |
catgaccg-cccttcgtcctcttccgtttcaccatcgacgacctcttcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcg |
109115 |
T |
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| Q |
356 |
tttggcttaacgtcctcgtgagtcgtgtcggtgc----------tgcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatg |
445 |
Q |
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| T |
109114 |
-ttggcttaacgtcctcgtgagtcgtgtcggtgctcgtcggtgttgcggtggttgttttgaatgaggcgtttcagagtattgatgatttgtatttagatg |
109016 |
T |
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| Q |
446 |
aagaagagatctttgatggtgatttgctttcagttgttggtggtagctttgataccaaacgttgtttcagcgacggtgaaggagagtcacaatctg |
541 |
Q |
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| T |
109015 |
aagaagagatctttgatggtgatttgctttcagttgttggtggtagcttcgataccaaacgttgtttcagcgatggtgaaggagagtcacaatctg |
108920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 237 - 494
Target Start/End: Original strand, 31283114 - 31283374
Alignment:
| Q |
237 |
gttcttgctcttcttcttccgtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgta |
336 |
Q |
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| T |
31283114 |
gttcttgcttttcttcttccgtgaccgccccgtcgtcctcttccgtttcaccattgatgaccgcttcctcctcgtcctactctccaccctcaccatcgtc |
31283213 |
T |
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| Q |
337 |
gctcttgtcttcaccggcgtttggcttaacgtcctcgtg--agtcgt-gtcggtgctgcggtggttgttttgaatgaggcgtttcagagtattgatgatt |
433 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||| | |||||| ||||||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
31283214 |
gctcttgtcttcaccggcgtttggcttaacgtccttgtgtcagtgctcgtcggttctgcggtggttgttttgcatgcggcgtttcggagtattgatgatt |
31283313 |
T |
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| Q |
434 |
tgtatttagatgaagaagagatctttgatggtgatttgctttcagttgttggtggtagctt |
494 |
Q |
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| T |
31283314 |
tgtatttagatgaagaagagatctttgatggtgatttgctttcagttgttggtggtagctt |
31283374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 31282834 - 31282882
Alignment:
| Q |
168 |
ccattaatcttatcccaacttacaactctctcccttcaacctcaacttc |
216 |
Q |
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| T |
31282834 |
ccattaatcctactccaacttacaactctctcccttcaacctcaacttc |
31282882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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