View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17368_low_2 (Length: 524)

Name: NF17368_low_2
Description: NF17368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17368_low_2
NF17368_low_2
[»] chr1 (5 HSPs)
chr1 (334-471)||(52140746-52140883)
chr1 (468-509)||(52140673-52140714)
chr1 (171-232)||(6923510-6923571)
chr1 (285-328)||(52140901-52140944)
chr1 (401-433)||(52131249-52131281)
[»] chr4 (2 HSPs)
chr4 (7-215)||(37615638-37615847)
chr4 (194-230)||(17558824-17558860)
[»] chr8 (4 HSPs)
chr8 (357-459)||(17524854-17524955)
chr8 (229-353)||(17524437-17524571)
chr8 (468-509)||(17525002-17525043)
chr8 (194-231)||(16367881-16367918)
[»] chr6 (1 HSPs)
chr6 (7-154)||(22083598-22083733)
[»] chr3 (2 HSPs)
chr3 (193-234)||(52130754-52130795)
chr3 (194-230)||(5561552-5561588)
[»] chr7 (1 HSPs)
chr7 (193-229)||(24763319-24763355)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 334 - 471
Target Start/End: Complemental strand, 52140883 - 52140746
Alignment:
Q  334 gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140883 gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac 52140784  T
Q  434 caaacttacttttacaattttctatacatcttccacta 471  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  52140783 caagcttacttttacaattttctatacatcttccacta 52140746  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 468 - 509
Target Start/End: Complemental strand, 52140714 - 52140673
Alignment:
Q  468 actagcctctctgttaatgcattatctttcaatatggcttct 509  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  52140714 actagcctctctgttaatgcattatctttcaatatggcttct 52140673  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 6923510 - 6923571
Alignment:
Q  171 ttcaactaatatttttagcaaattatgacccatgcggcagcacgggtagacaatctagttta 232  Q
    ||||||||||||||||||| |  |||||||| ||| || |||||||||||| ||||||||||    
T  6923510 ttcaactaatatttttagctatatatgacccgtgctgctgcacgggtagacgatctagttta 6923571  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 52140944 - 52140901
Alignment:
Q  285 gttggccaattgcagaggaggataagagaactcaaaatcaagct 328  Q
    ||||||||||||||||||||  |||||||||||||||| |||||    
T  52140944 gttggccaattgcagaggagattaagagaactcaaaattaagct 52140901  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 433
Target Start/End: Complemental strand, 52131281 - 52131249
Alignment:
Q  401 cattccaatttccaatctctaagtaataaatac 433  Q
    |||||||||||||||||||| ||||||||||||    
T  52131281 cattccaatttccaatctcttagtaataaatac 52131249  T

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Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 37615847 - 37615638
Alignment:
Q  7 gtggagtagcataggccggacaattatggttatgtatgtctatcatatct--ataattttttaacctatgtaagatgatcatacgtcaattaattaatcg 104  Q
    |||||||| ||||||||| |||||||||| ||||||||||| ||||||||    | ||||||||||||||||||| |||| ||||||    |||||||||    
T  37615847 gtggagtaacataggccgaacaattatggctatgtatgtctctcatatcttcgaatttttttaacctatgtaagacgatcgtacgtc----aattaatcg 37615752  T
Q  105 catttagtcagaacaatttggtacattgagtaactatatattaattttatcggatatat---gattgctttcaactaatatttttagcaaattatgaccc 201  Q
    ||||  ||||||||||||  ||| |||||||||||||||||||||||||| ||||||||    || |||||||||||||| |||||| ||||||||||||    
T  37615751 cattacgtcagaacaattcagtatattgagtaactatatattaattttattggatatataacaatggctttcaactaatagttttagtaaattatgaccc 37615652  T
Q  202 atgcggcagcacgg 215  Q
     ||| |||||||||    
T  37615651 gtgcagcagcacgg 37615638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 17558860 - 17558824
Alignment:
Q  194 tatgacccatgcggcagcacgggtagacaatctagtt 230  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  17558860 tatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

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Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 459
Target Start/End: Original strand, 17524854 - 17524955
Alignment:
Q  357 acatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaataccaaacttacttttacaattttct 456  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  17524854 acatcgaattaaattagcaataccgtggccagtaggacttcatacattccaatttccaatctctaagtaataaatacc-aagttacttttacaattttct 17524952  T
Q  457 ata 459  Q
    |||    
T  17524953 ata 17524955  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 229 - 353
Target Start/End: Original strand, 17524437 - 17524571
Alignment:
Q  229 tttaacaaatttgtgtgaaccatcgcggtattctaccaagtttctcttgctcaaatg-ttggccaattgcagaggaggataagagaactcaaaatcaag- 326  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||  |||||||||||||||| |||     
T  17524437 tttaagaaatttgtgtgaaacatcgcggtactctaccaagtttctcttgctccaatgtttggccaattgcagaggagattaagagaactcaaaattaagc 17524536  T
Q  327 --------ctcgtaagtggcaactgtttgtacata 353  Q
            |||||||||||||||||||||||||||    
T  17524537 tttaattactcgtaagtggcaactgtttgtacata 17524571  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 468 - 509
Target Start/End: Original strand, 17525002 - 17525043
Alignment:
Q  468 actagcctctctgttaatgcattatctttcaatatggcttct 509  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17525002 actagcctctctgttaatgcattatctttcaatatggcttct 17525043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 16367881 - 16367918
Alignment:
Q  194 tatgacccatgcggcagcacgggtagacaatctagttt 231  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  16367881 tatgacccgtgcggcagcacgggtagacgatctagttt 16367918  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 22083598 - 22083733
Alignment:
Q  7 gtggagtagcataggccggacaattatggttatgtatgtctatcatatctataattttttaacctatgtaagatgatcatacgtcaattaattaatcgca 106  Q
    |||||||| ||||||||| ||| |||||| ||||||||||| ||||||||        |  |||||||||||| |||||||||| ||||    |||||||    
T  22083598 gtggagtaacataggccgaacagttatggctatgtatgtctctcatatct--------tcgacctatgtaagacgatcatacgtgaatt----aatcgca 22083685  T
Q  107 tttagtcagaacaatttggtacattgagtaactatatattaattttat 154  Q
    ||  ||||||||||||  ||||||||||||||||||| ||||||||||    
T  22083686 ttacgtcagaacaattcagtacattgagtaactatatcttaattttat 22083733  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 52130754 - 52130795
Alignment:
Q  193 ttatgacccatgcggcagcacgggtagacaatctagtttaac 234  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  52130754 ttatgacccgtgcggcagcacgggtagacaatctagtctaac 52130795  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 5561588 - 5561552
Alignment:
Q  194 tatgacccatgcggcagcacgggtagacaatctagtt 230  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  5561588 tatgacccgtgcggcagcacgggtagacgatctagtt 5561552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 24763319 - 24763355
Alignment:
Q  193 ttatgacccatgcggcagcacgggtagacaatctagt 229  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24763319 ttatgacccgtgcggcagcacgggtagacaatctagt 24763355  T

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