View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17368_low_3 (Length: 449)
Name: NF17368_low_3
Description: NF17368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17368_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 26832193 - 26831756
Alignment:
| Q |
1 |
attatgaatgcttagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatctaggggttgaggttcgaacctcggacttctca |
100 |
Q |
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| T |
26832193 |
attatggatgctaagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatccaggggttgaggttcaaacctcggacttctca |
26832094 |
T |
|
| Q |
101 |
cttattcacctttcgatgaatttccaactactaggatgatatagtgcatatagactaacttaannnnnnnncatcatcaccttaattaggaaacac-ttg |
199 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| |
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| T |
26832093 |
cttattcacttttagatgaatttccaactactaggatgatatagtgcatatagactaacttaattttttttcatcatcacattaattaggaaacacattg |
26831994 |
T |
|
| Q |
200 |
aagaagagactaatctcctactaatacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatctattag |
299 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831993 |
aagaagagactaatctcctactattacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatctattag |
26831894 |
T |
|
| Q |
300 |
taatgaacggattaattaatatttgtactatcctgcaaaataatttctaatcagtataagataaactatatagcaattaatttgcatcgaagcaaggttg |
399 |
Q |
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| T |
26831893 |
taatgaactgattaattaatatttgtactatcctgcaaaataattcctaatcagtataagataaactatatagcaattaatttgcatcgaagcaaggttg |
26831794 |
T |
|
| Q |
400 |
ttgaattaattaattaacgatgtgtgattttccctttg |
437 |
Q |
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| T |
26831793 |
ttgaattaattaattaacgatgtgtgattttccctttg |
26831756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 10629409 - 10629461
Alignment:
| Q |
71 |
ggggttgaggttcgaacctcggacttctcacttattcacctttcgatgaattt |
123 |
Q |
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| T |
10629409 |
ggggttggggttcgaacctcggacatcccatttattcacctttagatgaattt |
10629461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 3218632 - 3218669
Alignment:
| Q |
74 |
gttgaggttcgaacctcggacttctcacttattcacct |
111 |
Q |
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| T |
3218632 |
gttgaggttcgaacctcgaacttctcacttattcacct |
3218669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 24074542 - 24074590
Alignment:
| Q |
64 |
atatctaggggttgaggttcgaacctcggacttctcacttattcacctt |
112 |
Q |
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| T |
24074542 |
atatgtaggggttgaagttcgaacctcggacacctcacttattcacctt |
24074590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 14487597 - 14487645
Alignment:
| Q |
64 |
atatctaggggttgaggttcgaacctcggacttctcacttattcacctt |
112 |
Q |
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| T |
14487597 |
atatgtaggggttggggttcgaacctcggatatcccacttattcacctt |
14487645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 42488745 - 42488793
Alignment:
| Q |
64 |
atatctaggggttgaggttcgaacctcggacttctcacttattcacctt |
112 |
Q |
| |
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|||| ||||||||| ||||| |||||||||| |||||||||||||||| |
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| T |
42488745 |
atatgtaggggttggggttcaaacctcggacgcctcacttattcacctt |
42488793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 31435555 - 31435511
Alignment:
| Q |
69 |
taggggttgaggttcgaacctcggacttctcacttattcaccttt |
113 |
Q |
| |
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||||||||| |||||||||||||||| || |||||||||| |||| |
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| T |
31435555 |
taggggttggggttcgaacctcggacatcccacttattcatcttt |
31435511 |
T |
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