View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17368_low_4 (Length: 438)
Name: NF17368_low_4
Description: NF17368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17368_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 32466971 - 32466563
Alignment:
| Q |
18 |
aataggagcatttcagctcttgttatatggatgcatgaggtcacacacaaattagcattagtaactcccaatatttcaagggaccgttttttctgaaaag |
117 |
Q |
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| T |
32466971 |
aataggagcatttcagctcttgttatatggatgcatgaggtcacacacaaattagcattagtaactcccaatatttcaagggaccgttttttctgaaaag |
32466872 |
T |
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| Q |
118 |
tttggttaactgaaccttttaaattttatggttcagatcatgaaccattgaatatgatttgatctttaatgatccaaccaataacatgagatatatactt |
217 |
Q |
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| T |
32466871 |
tttggttaactgaaccttttaaattt-atggttcagatcatgaaccatttaatatgatttgatctttaatgatccaaccaataacatgagatatatactt |
32466773 |
T |
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| Q |
218 |
gaaatggggtgtgacatctaatgaccactgatgaaattattactaaattgatccacctttggcatctgatgactacttatggaattatgtagaattggac |
317 |
Q |
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| T |
32466772 |
gaaatggggtgtgacatctaatgaccactgatggaattattactaaattgatccacctttggcatctgatgactacttatggaattatgtagaattggac |
32466673 |
T |
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| Q |
318 |
atttgcaagtcggattcgccatcctatcctatctatgtatttcgacaatgaatttgtacgctgcaagttgttacttactgaatcgagcctcgtaggatga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32466672 |
atttgcaagtcggattcgccatcctatcctatctatgtatttcgacaatgaacttgtatgctgcgagttgttacttactgaatcgagcctcgtaggatga |
32466573 |
T |
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| Q |
418 |
tgttattgat |
427 |
Q |
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| T |
32466572 |
cgttattgat |
32466563 |
T |
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