View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17368_low_5 (Length: 413)
Name: NF17368_low_5
Description: NF17368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17368_low_5 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 47649660 - 47649832
Alignment:
| Q |
12 |
aacctgtgatagactttccctttaggggtttaattccagctcctaagccacgacaatatcccaatcgccctcccacaactgattcaaaagcaatattcgc |
111 |
Q |
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| T |
47649660 |
aacctgtgacagactttccctttaggggtttaattccagctcctaagccacgacaatatcccaatcgccctcccacaactgattcaaaagcaatattcgc |
47649759 |
T |
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| Q |
112 |
aatgacatctttatcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcgtctat |
184 |
Q |
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| T |
47649760 |
aatgacatctttatcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcgtctat |
47649832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 260 - 413
Target Start/End: Original strand, 47649908 - 47650061
Alignment:
| Q |
260 |
ggatgtcatacatgaacttccttagaagcatcatttatccatctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctccttttt |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47649908 |
ggatgtcatacatgaacttccttagaagcatcatttatccatctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctccttttt |
47650007 |
T |
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| Q |
360 |
ggtttcaggatctctctaaaagcaaattttcatcatcacaaaatataaatacat |
413 |
Q |
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| T |
47650008 |
ggtttcaggatctctctaaaagcaaattttcatcatcacaaaatataaatacat |
47650061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 260 - 413
Target Start/End: Complemental strand, 170916 - 170762
Alignment:
| Q |
260 |
ggatgtcatacatgaacttccttagaagcatcatttatccat-ctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctcctttt |
358 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |
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| T |
170916 |
ggatgccatacatgaacttccttagaagcatcatttatccattctccattgctgtttgtgtgagtcattctccataaatccttatagttagcctcctttt |
170817 |
T |
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| Q |
359 |
tggtttcaggatctctctaaaagcaaattttcatcatcacaaaatataaatacat |
413 |
Q |
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| T |
170816 |
tggtttcgggatctctctaaaagcaaattttcatcattgcaaaatataaatacat |
170762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 171049 - 170995
Alignment:
| Q |
124 |
atcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttc |
178 |
Q |
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| T |
171049 |
atcagtgtcctcatatccagcttgtaagaaaactgaagaagtttcttcaaccttc |
170995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 260 - 413
Target Start/End: Original strand, 92066 - 92220
Alignment:
| Q |
260 |
ggatgtcatacatgaacttccttagaagcatcatttatccat-ctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctcctttt |
358 |
Q |
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|||||||||||||||| | |||||||||||||||||||||| |||| ||| ||||| || ||||||||||||||||||||||||||||| ||||||||| |
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| T |
92066 |
ggatgtcatacatgaatattcttagaagcatcatttatccattctccgttgttgtttatgtgagtcattctccataaatccttatagttgtgctcctttt |
92165 |
T |
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| Q |
359 |
tggtttcaggatctctctaaaagcaaattttcatcatcacaaaatataaatacat |
413 |
Q |
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| T |
92166 |
cagtttcaagatctctctaaaagcaaattttcatcgtcacaaaatataaatacat |
92220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 91833 - 91990
Alignment:
| Q |
27 |
ttccctttaggggtttaattccagctcctaagccacgacaatatcccaatcgccctcccacaactgattcaaaagcaatattcgcaatgacatctttatc |
126 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| ||| | ||||||||| |
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| T |
91833 |
ttccctttagggttttaattccagctcccaagccacgacaatatcccgatcgctctcccacaactgatttaaaagcaatattcataattaaatctttatc |
91932 |
T |
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| Q |
127 |
agtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcgtctat |
184 |
Q |
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| T |
91933 |
agtgttcccatatccagcttctaggtgatatgaagaagcttcttcaaccctcatctat |
91990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 30753873 - 30753960
Alignment:
| Q |
97 |
aaaagcaatattcgcaatgacatctttatcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcgtctat |
184 |
Q |
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| T |
30753873 |
aaaagcaatattcgtaatcacatctttatcggtgtccccatatctagtttctgagtaatcagaagaagcttcttcaacccttgtctat |
30753960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 30754076 - 30754116
Alignment:
| Q |
261 |
gatgtcatacatgaacttccttagaagcatcatttatccat |
301 |
Q |
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| T |
30754076 |
gatgtcatacatgaacttccttagaagcgtcatttatccat |
30754116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 407
Target Start/End: Original strand, 30754153 - 30754190
Alignment:
| Q |
370 |
tctctctaaaagcaaattttcatcatcacaaaatataa |
407 |
Q |
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| T |
30754153 |
tctctctaaaagcatattttcatcatcacaaaatataa |
30754190 |
T |
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