View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17368_low_8 (Length: 340)
Name: NF17368_low_8
Description: NF17368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17368_low_8 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0002 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 18341635 - 18341958
Alignment:
| Q |
18 |
gattctttctaatcgagcctctcgatctgtcattatacccctagaagtagaaagaattacaatccccattcctcctaaaactctcggaatttgtcgatag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18341635 |
gattctttctaatcgagcctctcgatctgtcattatacccctagaagtagaaagaattacaatccccattcctcctaaaactctcggaatttgttgatag |
18341734 |
T |
|
| Q |
118 |
ttagaatagattcttagaccaggtgtactgatcctttttaaatttaaaaaagttttatacgattctttcctatttcttctataccgtagagttaaaacta |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18341735 |
ttagaatagattcgtagaccaggtgtactgatcctttttaaatttaaaaaagttttatacgattctttcctatttcttctataccgtagagttaaaacta |
18341834 |
T |
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| Q |
218 |
aaaagtatttgttgctttctccatgttttctaacgttttcaac-aaaccctctcgtaaaagtattttcacaatgttttcggtgatattagtaagtggtat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18341835 |
aaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtattttcacaatgttttcggtgatattagtaagtggtat |
18341934 |
T |
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| Q |
317 |
ttgaaccgttctttttcgattcat |
340 |
Q |
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|||||||||||||||||||||||| |
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| T |
18341935 |
ttgaaccgttctttttcgattcat |
18341958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 22100624 - 22100912
Alignment:
| Q |
18 |
gattctttctaatcgagcctctcgatctgtcattatacccctagaagtagaaagaattacaatccccattcctcctaaaactctcggaatttgtcgatag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22100624 |
gattctttctaatcgagcctctcgatctgtcattatacccctagaagtagaaagaattacaatccccattcctcctaaaactctcggaatttgttgatag |
22100723 |
T |
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| Q |
118 |
ttagaatagattcttagaccaggtgtactgatcctttttaaatttaaaaaagttttatacgattctttcctatttcttctataccgtagagttaaaacta |
217 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22100724 |
ttagaatagattcgtagaccaggtgtcttgatcctttttaaatttaaaaaagttttatacgattctttcctatttcttttataccgtagagttaaaacta |
22100823 |
T |
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| Q |
218 |
aaaagtatttgttgctttctccatgttttctaacgttttcaac-aaaccctctcgtaaaagtattttcacaatgttttcggtgatatta |
305 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22100824 |
aaaagtatttgttgttttctcgatgttttctaacgttttcaacaaaaccctctcgtaaaagtattttcacaatgttttcggtgatatta |
22100912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 22101198 - 22101234
Alignment:
| Q |
304 |
tagtaagtggtatttgaaccgttctttttcgattcat |
340 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22101198 |
tagtaagtggtatttgaaccgttctttttcgattcat |
22101234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 113 - 340
Target Start/End: Complemental strand, 138626 - 138399
Alignment:
| Q |
113 |
gatagttagaatagattcttagaccaggtgtactgatcctttttaaatttaaaaaagttttatacgattctttcctatttcttctataccgtagagttaa |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
138626 |
gatagttagaatagattcgtagaccaggtgtactgatcctttttaaatttaaaaaagttttatacgattctttcctatttcttctataccgtagagttaa |
138527 |
T |
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| Q |
213 |
aactaaaaagtatttgttgctttctccatgttttctaacgttttcaac-aaaccctctcgtaaaagtattttcacaatgttttcggtgatattagtaagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
138526 |
aactaaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtatttt-acaatgttttcggtgatattagtaagt |
138428 |
T |
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| Q |
312 |
ggtatttgaaccgttctttttcgattcat |
340 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
138427 |
ggtatttgaaccgttctttttcgattcat |
138399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 276902 - 276980
Alignment:
| Q |
30 |
tcgagcctctcgatctgtcattatacccctagaagtagaaagaattacaatccccattcctcctaaaactctcggaatt |
108 |
Q |
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|||||| ||||||||||||||||| || | ||||||||||||||| |||| |||||||| || |||||| | |||||| |
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| T |
276902 |
tcgagcttctcgatctgtcattatccctcgagaagtagaaagaatagcaattcccattccacccaaaactttaggaatt |
276980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 277140 - 277183
Alignment:
| Q |
261 |
aaaccctctcgtaaaagtattttcacaatgttttcggtgatatt |
304 |
Q |
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||||||||||||| ||||||||| |||||||||||||| ||||| |
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| T |
277140 |
aaaccctctcgtagaagtattttaacaatgttttcggtaatatt |
277183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 113 - 340
Target Start/End: Original strand, 13168362 - 13168589
Alignment:
| Q |
113 |
gatagttagaatagattcttagaccaggtgtactgatcctttttaaatttaaaaaagttttatacgattctttcctatttcttctataccgtagagttaa |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13168362 |
gatagttagaatagattcgtagaccaggtgtactgatcctttttaaatttaaaaaagttttatacgattctttcctatttcttctataccgtagagttaa |
13168461 |
T |
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| Q |
213 |
aactaaaaagtatttgttgctttctccatgttttctaacgttttcaac-aaaccctctcgtaaaagtattttcacaatgttttcggtgatattagtaagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13168462 |
aactaaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaaccctctcgtaaaagtatttt-acaatgttttcggtgatattagtaagt |
13168560 |
T |
|
| Q |
312 |
ggtatttgaaccgttctttttcgattcat |
340 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
13168561 |
ggtatttgaaccgttctttttcgattcat |
13168589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 14603960 - 14604063
Alignment:
| Q |
101 |
tcggaatttgtcgatagttagaatagattcttagaccaggtgtactgatcctttttaaatttaaaaaagttttatacgattctttcctatttcttctata |
200 |
Q |
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||||||||||| ||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| || |||| |
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| T |
14603960 |
tcggaatttgttgatagttagaataaattcgtagaccaggtgtattgatcttttttaaatttaaaaaagttttatacgattcttttctattttttttata |
14604059 |
T |
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| Q |
201 |
ccgt |
204 |
Q |
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|||| |
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| T |
14604060 |
ccgt |
14604063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 208 - 340
Target Start/End: Complemental strand, 1368 - 1235
Alignment:
| Q |
208 |
gttaaaactaaaaagtatttgttgctttctccatgttttctaacgttttcaacaaaccct-ctcgtaaaagtattttcacaatgttttcggtgatattag |
306 |
Q |
| |
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|||||||| ||||| |||||||||| ||| | |||||| || ||||| || | ||| ||| |||||||||||||||| ||||||||||| ||||| |||| |
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| T |
1368 |
gttaaaaccaaaaaatatttgttgcgttcccgatgtttccttacgttatcgataaaaccttctcgtaaaagtattttaacaatgttttcagtgatgttag |
1269 |
T |
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| Q |
307 |
taagtggtatttgaaccgttctttttcgattcat |
340 |
Q |
| |
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|| | |||||||| ||||| ||||| |||||| |
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| T |
1268 |
tagatcctatttgaatcgttccttttctattcat |
1235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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