View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17369_high_2 (Length: 285)
Name: NF17369_high_2
Description: NF17369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17369_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 22779756 - 22779624
Alignment:
| Q |
83 |
ctcgtagtctagccctaaacttgactatgtacataatgatattagattttttgatcagtaattctctttcttttcctttcaaagaaacgtagatttttgt |
182 |
Q |
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| T |
22779756 |
ctcgtagtctagccctaaacttgactatgtacataatgatattagattttttgatcagtaattctctttcttttcctttcaaagaaacgtatatttttgt |
22779657 |
T |
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| Q |
183 |
ttaaatacgatatattcatctcgcaacaacaaa |
215 |
Q |
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| T |
22779656 |
ttaaatacgatatatttatctcgcaacaacaaa |
22779624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 22780166 - 22780034
Alignment:
| Q |
83 |
ctcgtagtctagccctaaacttgactatgtacataatgatattagattttttgatcagtaattctctttcttttcctttcaaagaaacgtagatttttgt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22780166 |
ctcgtagtctagccctaaacttgactatgtacataatgatattagattttttgatcagtaattctctttcttttcctttcaaagaaacgtatatttttgt |
22780067 |
T |
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| Q |
183 |
ttaaatacgatatattcatctcgcaacaacaaa |
215 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
22780066 |
ttaaatacgatatatttatctcgcaacaacaaa |
22780034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 22779098 - 22779050
Alignment:
| Q |
220 |
ctaataactaaatgagtgaattttaaatgagaattttacctcatacctc |
268 |
Q |
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| T |
22779098 |
ctaataactaaatgagtgaattttaaatgaaaattttacctcatacctc |
22779050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22780248 - 22780208
Alignment:
| Q |
1 |
acaggagaaaatgattgatttaaaacggaaatgagtattta |
41 |
Q |
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| T |
22780248 |
acaggagaaaatgattgatttaaaacggaaatgagtattta |
22780208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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