View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17369_high_3 (Length: 230)
Name: NF17369_high_3
Description: NF17369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17369_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6372810 - 6373022
Alignment:
| Q |
1 |
tcatcaccagttacctaacaagcttccaatctccttggaacttcttagattatggatcaagcaacctatatgctccaatattgtgataaccaactaagat |
100 |
Q |
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| T |
6372810 |
tcatcactagttacctaacaatcttccaatctccttggaacttcttagattatggatcaagcaacatatatgctccaatattgtgataaccaactaagat |
6372909 |
T |
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| Q |
101 |
catagcttcactcttgtcctccaacttctttcttcttgtatcagggacatgcttatagcatattgagccaaacaccttcaaatgactaattgatggtttt |
200 |
Q |
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| T |
6372910 |
cataacttcactcttgtcctccaacttctttcttcttgtatcagggacatgcttatagcttattgagccaaacatcttcaaatgactgattgatggtttt |
6373009 |
T |
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| Q |
201 |
ctacctgaccaaa |
213 |
Q |
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| T |
6373010 |
ctacccgaccaaa |
6373022 |
T |
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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 14639361 - 14639189
Alignment:
| Q |
41 |
cttcttagattatggatcaagcaacctatatgctccaatattgtgataaccaactaagatcatagcttcactcttgtcctccaacttctttcttcttgta |
140 |
Q |
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| T |
14639361 |
cttcttagagtgtagatcaagcaatctataagctccagtgttgtgatagccaaccaaaatcatagcttcaattttgtcctctagcttctttcttcttgaa |
14639262 |
T |
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| Q |
141 |
tcagggacatgcttatagcatattgagccaaacaccttcaaatgactaattgatggttttctacctgaccaaa |
213 |
Q |
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| T |
14639261 |
tcaggaacatgcttatagaagattgaaccaaaaactttcaaattaatgattgaaggtttccttcttgaccaaa |
14639189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 12197052 - 12197124
Alignment:
| Q |
141 |
tcagggacatgcttatagcatattgagccaaacaccttcaaatgactaattgatggttttctacctgaccaaa |
213 |
Q |
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| T |
12197052 |
tcagggatatgcttatagcatattgagccaaataccttcaaatgactgacatatggttttctacctgaccaaa |
12197124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 33684018 - 33683950
Alignment:
| Q |
42 |
ttcttagattatggatcaagcaacctatatgctccaatattgtgataaccaactaagatcatagcttca |
110 |
Q |
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| T |
33684018 |
ttcttagagtgtgaatcaaacaatctatatgctccagtattgtgatatccaactaagatcatagattca |
33683950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 33701072 - 33701004
Alignment:
| Q |
42 |
ttcttagattatggatcaagcaacctatatgctccaatattgtgataaccaactaagatcatagcttca |
110 |
Q |
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| T |
33701072 |
ttcttagagtgtgaatcaaacaatctatatgctccagtattgtgatatccaactaagatcatagattca |
33701004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 33375072 - 33375110
Alignment:
| Q |
149 |
atgcttatagcatattgagccaaacaccttcaaatgact |
187 |
Q |
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| T |
33375072 |
atgcttatagcataatgatccaaacaccttcaaatgact |
33375110 |
T |
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