View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17369_low_1 (Length: 512)
Name: NF17369_low_1
Description: NF17369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17369_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 380 - 497
Target Start/End: Complemental strand, 15050388 - 15050271
Alignment:
| Q |
380 |
gtgggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgt |
479 |
Q |
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| T |
15050388 |
gtgggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgt |
15050289 |
T |
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| Q |
480 |
aaagaaggttgtgcaaac |
497 |
Q |
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| T |
15050288 |
aaagaaggttgtgcaaac |
15050271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 15050466 - 15050388
Alignment:
| Q |
11 |
cataggaggatggattagagaactaaatcatgtgttgaacacccattagagttatctgtgtttgacggaaagtgttgag |
89 |
Q |
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| T |
15050466 |
cataggaggatggattagagaactaaatcatgtgttgaacacccattagagttatctgtgctcgacggaaagtgttgag |
15050388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 398 - 493
Target Start/End: Complemental strand, 14775534 - 14775439
Alignment:
| Q |
398 |
aagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgtaaagaaggttgtgc |
493 |
Q |
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| T |
14775534 |
aagatttgtgaaaaatctaactaaactctctacaggttaaatgttttaatgctccttttcaaccatccgaaattttggttgtaaagaaggttgtgc |
14775439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 492
Target Start/End: Complemental strand, 15017598 - 15017507
Alignment:
| Q |
401 |
atttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgtaaagaaggttgtg |
492 |
Q |
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| T |
15017598 |
atttgtgcaaaatctaactaaactatctacaggttagatgtttcaatgctcctctgaagccacatgaaattttggatgtaaaggaggttgtg |
15017507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 496
Target Start/End: Complemental strand, 17882927 - 17882809
Alignment:
| Q |
378 |
tggtgggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggat |
477 |
Q |
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| T |
17882927 |
tggtaggttaactttagtataagatttgtgaaacttctaacaatactatctacaggctgtatgtttcaatgctcctatgcaaccatgggaaattgcaaat |
17882828 |
T |
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| Q |
478 |
gtaaagaaggttgtgcaaa |
496 |
Q |
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| T |
17882827 |
gtaaagaaggttgtgcaaa |
17882809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 495
Target Start/End: Original strand, 36874192 - 36874304
Alignment:
| Q |
383 |
ggttaacttgagtgtaagatttgtgaaaaatctaactaaactatccacaggttaaatgtttcaactcttctttggaacaatgtgaaatttcggatgtaaa |
482 |
Q |
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| T |
36874192 |
ggttaacatgtgtataagatttgtgaaaaatctaaccaaactatatacaggttagatgtttcaacgctcctctgcaaccagcagaaattgtgggtgtaaa |
36874291 |
T |
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| Q |
483 |
gaaggttgtgcaa |
495 |
Q |
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| T |
36874292 |
gaaggttgtgcaa |
36874304 |
T |
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