View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17369_low_2 (Length: 457)
Name: NF17369_low_2
Description: NF17369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17369_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 182 - 447
Target Start/End: Original strand, 41208716 - 41208981
Alignment:
| Q |
182 |
caatcatggaatatttaatcaaatatataatcacattattattaatcttgaacaagtttctgtatcacatagtacannnnnnnnatagccaaaatttatt |
281 |
Q |
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| T |
41208716 |
caatcatggaatatttaatcaaatatataatcgcattattattaatcttgaacaagtttctgtatcacatagtacattttttttatagccaaaatttagt |
41208815 |
T |
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| Q |
282 |
ggttagtagtcagggtttgaatcaggaacctcattctcaaactccttcaggtgtcctgaataaaccacttgagttatacattggggaccacatagtacat |
381 |
Q |
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| T |
41208816 |
ggttagtagtcagggtttgaatccggaacctcattctcaaactccttcaggtgtcctgaataaaccacttgagttatacattagggaccacatagtacat |
41208915 |
T |
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| Q |
382 |
tgttgatggtgtaccttcaatttcaatggagatcgatgttttattctttattgtgatcagtctgtg |
447 |
Q |
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| T |
41208916 |
tgttgatggtgtaccttcaatttcaatggagatcgatgttttgttctttattgtgatcagtctgtg |
41208981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 41198545 - 41198749
Alignment:
| Q |
1 |
cactgtattcaatttatataattgctaaacctttcatgcctgatatttgattttttgctgatgaatcattgtttgctatgatgaatgtgttggttttcaa |
100 |
Q |
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| T |
41198545 |
cactgtattcaatttatataattgctaaacttttcatgcctgatatttgattttttgctgatgaatcattgtttgctatgatgaatgtgttggttttcaa |
41198644 |
T |
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| Q |
101 |
ttttcatatctattttacatcaagataaagaccccttatttgactttcaagttgactgtcattctgatgtgtaatcttcgtcaatcatggaatatttaat |
200 |
Q |
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| T |
41198645 |
ttttcatatctattttacatcaagataaagaccccttatttgactttcaagttgactgtcattctgatgtgtaatcttcgtcaatcatggaatatttaat |
41198744 |
T |
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| Q |
201 |
caaat |
205 |
Q |
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| T |
41198745 |
caaat |
41198749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 41208525 - 41208590
Alignment:
| Q |
53 |
ttttgctgatgaatcattgtttgctatgatgaatgtgttggttttcaattttcatatctattttaca |
119 |
Q |
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| T |
41208525 |
ttttgttgatgcatcattgtttgctatgatgaatgtgttggttttcaa-tttcatatctattttaca |
41208590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 394
Target Start/End: Original strand, 41198868 - 41198954
Alignment:
| Q |
308 |
aacctcattctcaaactccttcaggtgtcctgaataaaccacttgagttatacattggggaccacatagtacattgttgatggtgta |
394 |
Q |
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| T |
41198868 |
aacctcattctgaaactcccaagggtatcctgaattaaccacttaagttacgccttggggactacatcgtacattgttgatggtgta |
41198954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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