View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17369_low_3 (Length: 354)

Name: NF17369_low_3
Description: NF17369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17369_low_3
NF17369_low_3
[»] chr1 (31 HSPs)
chr1 (19-353)||(52565518-52565852)
chr1 (106-313)||(12177364-12177573)
chr1 (172-337)||(22414729-22414894)
chr1 (171-311)||(26977720-26977860)
chr1 (173-337)||(16050348-16050512)
chr1 (106-323)||(23728724-23728942)
chr1 (171-328)||(16030358-16030515)
chr1 (128-354)||(4601413-4601641)
chr1 (173-334)||(34273044-34273205)
chr1 (194-322)||(33101501-33101629)
chr1 (193-328)||(5671733-5671868)
chr1 (128-338)||(48637503-48637704)
chr1 (167-347)||(25408040-25408220)
chr1 (173-310)||(1659762-1659899)
chr1 (217-354)||(16299591-16299727)
chr1 (207-333)||(5459716-5459841)
chr1 (221-354)||(14255051-14255184)
chr1 (175-307)||(23280237-23280367)
chr1 (168-336)||(8018904-8019071)
chr1 (193-333)||(18246101-18246240)
chr1 (128-347)||(21682516-21682737)
chr1 (192-324)||(2140940-2141068)
chr1 (207-333)||(43344451-43344575)
chr1 (173-311)||(21098819-21098956)
chr1 (168-328)||(2612632-2612791)
chr1 (199-248)||(12032251-12032300)
chr1 (244-307)||(3590811-3590874)
chr1 (237-307)||(16522759-16522829)
chr1 (256-310)||(46016096-46016149)
chr1 (171-204)||(3590914-3590947)
chr1 (52-205)||(14254891-14255047)
[»] chr7 (26 HSPs)
chr7 (67-354)||(9135225-9135515)
chr7 (68-352)||(13291988-13292275)
chr7 (65-354)||(16986954-16987246)
chr7 (199-352)||(9867938-9868091)
chr7 (68-323)||(12644753-12645006)
chr7 (207-322)||(21161211-21161325)
chr7 (171-353)||(5863125-5863307)
chr7 (171-311)||(26762882-26763022)
chr7 (177-311)||(7486525-7486659)
chr7 (172-352)||(34854182-34854362)
chr7 (171-333)||(29373404-29373566)
chr7 (208-314)||(39879364-39879470)
chr7 (171-310)||(10287567-10287706)
chr7 (132-310)||(5925405-5925585)
chr7 (128-311)||(18773961-18774146)
chr7 (214-309)||(1979044-1979139)
chr7 (171-287)||(43172007-43172114)
chr7 (173-242)||(16204340-16204409)
chr7 (171-347)||(4781471-4781647)
chr7 (171-347)||(4813902-4814078)
chr7 (273-333)||(2226601-2226661)
chr7 (213-289)||(5929024-5929100)
chr7 (173-245)||(16203768-16203840)
chr7 (233-324)||(9573459-9573550)
chr7 (172-231)||(12265097-12265156)
chr7 (273-310)||(26562898-26562935)
[»] chr2 (31 HSPs)
chr2 (114-310)||(20120328-20120526)
chr2 (114-309)||(15825136-15825333)
chr2 (171-354)||(3586300-3586483)
chr2 (169-323)||(36267466-36267620)
chr2 (173-331)||(45258125-45258283)
chr2 (106-354)||(10923069-10923319)
chr2 (190-326)||(12168937-12169074)
chr2 (171-336)||(19919037-19919202)
chr2 (169-303)||(24499777-24499911)
chr2 (106-324)||(19050339-19050559)
chr2 (171-354)||(18135808-18135991)
chr2 (128-347)||(29710962-29711181)
chr2 (106-353)||(15390489-15390738)
chr2 (192-326)||(45714960-45715094)
chr2 (175-334)||(12127638-12127797)
chr2 (90-354)||(29137838-29138106)
chr2 (193-337)||(27846512-27846656)
chr2 (213-307)||(18770296-18770392)
chr2 (116-304)||(18772239-18772426)
chr2 (107-307)||(24157211-24157413)
chr2 (168-292)||(23257781-23257904)
chr2 (226-354)||(30638500-30638628)
chr2 (108-173)||(30638657-30638722)
chr2 (200-305)||(36022447-36022551)
chr2 (171-311)||(24318893-24319032)
chr2 (210-307)||(24755452-24755549)
chr2 (168-327)||(17671937-17672094)
chr2 (193-269)||(18134340-18134418)
chr2 (129-201)||(19290557-19290631)
chr2 (256-311)||(28426178-28426233)
chr2 (277-327)||(17626865-17626915)
[»] chr3 (29 HSPs)
chr3 (74-350)||(431187-431466)
chr3 (169-354)||(17143718-17143903)
chr3 (106-309)||(12516167-12516372)
chr3 (172-340)||(9801056-9801223)
chr3 (56-320)||(1770796-1771062)
chr3 (171-341)||(14860070-14860240)
chr3 (49-320)||(17485472-17485744)
chr3 (153-354)||(20622343-20622548)
chr3 (190-336)||(2311824-2311970)
chr3 (56-354)||(12731414-12731715)
chr3 (171-269)||(16704424-16704522)
chr3 (171-337)||(28723745-28723911)
chr3 (89-354)||(25495876-25496143)
chr3 (173-310)||(21342260-21342397)
chr3 (171-269)||(30606950-30607048)
chr3 (177-337)||(28715465-28715620)
chr3 (190-337)||(8122905-8123051)
chr3 (233-347)||(21649357-21649471)
chr3 (116-349)||(12108361-12108596)
chr3 (200-330)||(13085073-13085203)
chr3 (56-251)||(7835427-7835625)
chr3 (213-325)||(12251954-12252066)
chr3 (214-347)||(21652587-21652719)
chr3 (197-301)||(6109650-6109754)
chr3 (257-336)||(1475704-1475783)
chr3 (213-267)||(9781519-9781573)
chr3 (193-267)||(13932968-13933042)
chr3 (256-328)||(35314178-35314251)
chr3 (171-205)||(20118948-20118982)
[»] chr4 (25 HSPs)
chr4 (171-323)||(12683753-12683905)
chr4 (126-353)||(19643640-19643869)
chr4 (130-323)||(15742081-15742276)
chr4 (171-326)||(47253242-47253397)
chr4 (172-314)||(15514533-15514675)
chr4 (128-305)||(14601941-14602120)
chr4 (171-311)||(29157082-29157222)
chr4 (144-326)||(5518505-5518689)
chr4 (194-333)||(19809660-19809798)
chr4 (106-292)||(16012376-16012563)
chr4 (175-311)||(2674549-2674681)
chr4 (209-320)||(14003073-14003184)
chr4 (128-308)||(1638244-1638425)
chr4 (207-322)||(10981835-10981949)
chr4 (236-305)||(13171065-13171134)
chr4 (171-311)||(17110678-17110817)
chr4 (201-333)||(19818652-19818783)
chr4 (128-307)||(18463784-18463965)
chr4 (168-334)||(26894690-26894855)
chr4 (171-307)||(25066128-25066264)
chr4 (237-322)||(3981919-3982002)
chr4 (70-173)||(17746024-17746128)
chr4 (244-308)||(19563945-19564009)
chr4 (169-219)||(50151773-50151823)
chr4 (171-219)||(3642977-3643025)
[»] scaffold0002 (2 HSPs)
scaffold0002 (106-354)||(379653-379903)
scaffold0002 (171-353)||(120982-121164)
[»] chr8 (30 HSPs)
chr8 (123-354)||(21416675-21416908)
chr8 (114-321)||(3459397-3459604)
chr8 (169-332)||(30477600-30477763)
chr8 (173-321)||(24507427-24507575)
chr8 (172-319)||(18322915-18323062)
chr8 (172-328)||(13754721-13754877)
chr8 (172-308)||(24576555-24576691)
chr8 (171-327)||(26916869-26917025)
chr8 (194-267)||(6928084-6928157)
chr8 (190-332)||(17927694-17927836)
chr8 (192-332)||(13764948-13765088)
chr8 (171-302)||(17698256-17698387)
chr8 (226-333)||(23269204-23269311)
chr8 (108-325)||(17319542-17319747)
chr8 (194-328)||(15057998-15058132)
chr8 (171-292)||(5859814-5859935)
chr8 (175-311)||(4565368-4565504)
chr8 (205-264)||(24070879-24070938)
chr8 (121-322)||(11776162-11776357)
chr8 (273-345)||(20055525-20055597)
chr8 (216-347)||(24677603-24677734)
chr8 (244-311)||(14666883-14666950)
chr8 (171-231)||(23497134-23497194)
chr8 (234-308)||(1909742-1909816)
chr8 (226-259)||(7220553-7220586)
chr8 (175-256)||(23243819-23243900)
chr8 (126-219)||(23269306-23269401)
chr8 (273-333)||(23497208-23497268)
chr8 (171-230)||(20055625-20055683)
chr8 (207-236)||(7220617-7220646)
[»] scaffold0140 (1 HSPs)
scaffold0140 (171-354)||(6235-6418)
[»] chr5 (26 HSPs)
chr5 (49-314)||(25333712-25333982)
chr5 (175-328)||(22903056-22903209)
chr5 (106-354)||(22865698-22865948)
chr5 (171-300)||(26994577-26994706)
chr5 (171-354)||(25537342-25537525)
chr5 (89-307)||(32418371-32418593)
chr5 (193-327)||(27083231-27083364)
chr5 (106-351)||(25828892-25829139)
chr5 (171-321)||(20025253-20025403)
chr5 (65-309)||(24546329-24546571)
chr5 (65-205)||(31202237-31202380)
chr5 (171-269)||(24647310-24647408)
chr5 (192-333)||(8938868-8939010)
chr5 (129-311)||(26348018-26348190)
chr5 (239-354)||(31202467-31202582)
chr5 (236-336)||(227714-227814)
chr5 (235-326)||(16621173-16621264)
chr5 (217-267)||(19993182-19993232)
chr5 (194-266)||(34493542-34493610)
chr5 (235-307)||(19846053-19846125)
chr5 (244-311)||(18799760-18799827)
chr5 (256-336)||(4477153-4477233)
chr5 (235-307)||(26163619-26163691)
chr5 (171-205)||(21213329-21213363)
chr5 (256-328)||(7449755-7449827)
chr5 (173-205)||(25679219-25679251)
[»] scaffold0205 (2 HSPs)
scaffold0205 (106-325)||(22852-23073)
scaffold0205 (174-347)||(10889-11062)
[»] chr6 (46 HSPs)
chr6 (68-354)||(12449448-12449737)
chr6 (127-353)||(34064133-34064361)
chr6 (171-311)||(19305444-19305584)
chr6 (171-331)||(22572005-22572164)
chr6 (173-320)||(11087473-11087620)
chr6 (190-336)||(30680947-30681093)
chr6 (173-338)||(18147259-18147424)
chr6 (172-311)||(20148297-20148434)
chr6 (172-311)||(22184394-22184531)
chr6 (128-322)||(27860874-27861070)
chr6 (106-319)||(31295439-31295654)
chr6 (171-311)||(33596841-33596981)
chr6 (193-328)||(3404855-3404990)
chr6 (130-301)||(689786-689958)
chr6 (129-308)||(12424241-12424422)
chr6 (171-310)||(9291991-9292129)
chr6 (174-325)||(22497272-22497423)
chr6 (192-311)||(34187279-34187397)
chr6 (207-309)||(14080466-14080567)
chr6 (173-290)||(9403173-9403290)
chr6 (171-275)||(16130984-16131088)
chr6 (152-352)||(19277026-19277234)
chr6 (192-311)||(9277293-9277411)
chr6 (173-354)||(19730564-19730744)
chr6 (173-267)||(15480314-15480408)
chr6 (171-257)||(31423808-31423894)
chr6 (172-328)||(16343542-16343698)
chr6 (169-265)||(17380123-17380219)
chr6 (108-305)||(18566643-18566842)
chr6 (215-319)||(19331695-19331799)
chr6 (171-300)||(34572965-34573094)
chr6 (190-266)||(4251034-4251110)
chr6 (174-268)||(10115659-10115753)
chr6 (172-336)||(14268390-14268551)
chr6 (235-328)||(2907869-2907962)
chr6 (174-323)||(12487970-12488119)
chr6 (207-308)||(25008398-25008498)
chr6 (193-245)||(12203631-12203683)
chr6 (142-310)||(13823320-13823487)
chr6 (213-325)||(23768159-23768271)
chr6 (283-333)||(15104346-15104396)
chr6 (192-328)||(22692066-22692191)
chr6 (171-310)||(17703702-17703840)
chr6 (172-219)||(27772537-27772584)
chr6 (192-333)||(10926886-10927027)
chr6 (173-205)||(14184529-14184561)
[»] scaffold0291 (2 HSPs)
scaffold0291 (126-285)||(15354-15515)
scaffold0291 (129-325)||(8508-8701)
[»] scaffold0380 (1 HSPs)
scaffold0380 (122-354)||(6780-7014)
[»] scaffold0505 (1 HSPs)
scaffold0505 (194-328)||(7848-7982)
[»] scaffold0023 (1 HSPs)
scaffold0023 (172-316)||(95782-95926)
[»] scaffold0360 (1 HSPs)
scaffold0360 (173-312)||(13901-14040)
[»] scaffold0294 (1 HSPs)
scaffold0294 (126-283)||(166-326)
[»] scaffold0074 (2 HSPs)
scaffold0074 (150-354)||(35190-35397)
scaffold0074 (244-311)||(53316-53383)
[»] scaffold0005 (1 HSPs)
scaffold0005 (128-305)||(215258-215437)
[»] scaffold0057 (1 HSPs)
scaffold0057 (143-311)||(73743-73913)
[»] scaffold0103 (1 HSPs)
scaffold0103 (130-305)||(40782-40959)
[»] scaffold0263 (1 HSPs)
scaffold0263 (129-314)||(20424-20611)
[»] scaffold0054 (1 HSPs)
scaffold0054 (172-291)||(68774-68891)
[»] scaffold0013 (1 HSPs)
scaffold0013 (172-309)||(4396-4533)
[»] scaffold0101 (1 HSPs)
scaffold0101 (73-322)||(10604-10840)
[»] scaffold0464 (1 HSPs)
scaffold0464 (56-353)||(11454-11750)
[»] scaffold0174 (1 HSPs)
scaffold0174 (208-322)||(29286-29398)
[»] scaffold0092 (1 HSPs)
scaffold0092 (174-347)||(21592-21765)
[»] scaffold0479 (2 HSPs)
scaffold0479 (65-251)||(5078-5267)
scaffold0479 (294-354)||(4977-5037)
[»] scaffold0096 (1 HSPs)
scaffold0096 (172-311)||(42229-42367)
[»] scaffold0022 (1 HSPs)
scaffold0022 (168-309)||(69194-69333)
[»] scaffold0328 (1 HSPs)
scaffold0328 (213-313)||(10246-10346)
[»] scaffold0259 (1 HSPs)
scaffold0259 (310-354)||(24406-24450)
[»] scaffold0034 (1 HSPs)
scaffold0034 (168-336)||(18439-18606)
[»] scaffold0126 (1 HSPs)
scaffold0126 (210-311)||(31835-31933)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 52565852 - 52565518
Alignment:
Q  19 accacgtgacctaaatttacaccgccttaaagcacaccagcttaactgcaccgtgccacacagaagtgcacccccgcgcgaggatatcctacacatgtcc 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  52565852 accacgtgacctaaatttacaccgccttaaagcacaccaacttaactgcaccgtgccacacagaagtgcacccccgcgcgaggatatcctacacatatcc 52565753  T
Q  119 tcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgcctatataaggatgaacttgcttcaccctcaagttatgattcactt 218  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  52565752 tcctccgtccctaatcacatgctgcataactcggagacgattatgaccaacacgccaatataaggatgaacttgcttcaccctcaagttatgattcactt 52565653  T
Q  219 ttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaact 318  Q
    ||||||||||||||| | |||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||| | ||||||||    
T  52565652 ttcacaacactttctgcgcactctttttcagttcctttactgacttgagcgtcagagtgctaacgtgtctgcaggcacctttcgttccatcacgaaaact 52565553  T
Q  319 catcgccaccataccggaagtcgttaccgtcacac 353  Q
    ||||||||||||||||||||| |||||||||||||    
T  52565552 catcgccaccataccggaagttgttaccgtcacac 52565518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 106 - 313
Target Start/End: Complemental strand, 12177573 - 12177364
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctca 203  Q
    ||||||| |||||||| ||||||||||||| |||| |||||||||||||||  ||||| ||||  |||  |||||||||| ||||||||||||  |||||    
T  12177573 cctacacgtgtcctccaccatccctaatcaaatgccgcataactcggagacagttatgcccaatgcgcacctatataaggttgaacttgcttcctcctca 12177474  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| || || ||||||||||    
T  12177473 aggtataattcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgtcggagtgctaacgtgcatgtaggcacctttcgt 12177374  T
Q  304 tccaccgcga 313  Q
    ||||||||||    
T  12177373 tccaccgcga 12177364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 172 - 337
Target Start/End: Complemental strand, 22414894 - 22414729
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |    
T  22414894 gcctatacaaggatgaacttgcttcaccctcaagatatgattcacttttcacaacactttctacacactttttttcagtttcattactgacttgagcgtc 22414795  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaa 337  Q
    ||||||||||||||||||| | |||||||||||||||||| || |||||||| |||| ||| ||||    
T  22414794 agagtgctaacgtgcctgcgggcacctttcgttccaccgcaaagactcatcgtcaccgtactggaa 22414729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 26977860 - 26977720
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| | || |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||     
T  26977860 cgcctatataagggtcaaattgcttcaccctcaaggtatgattcatttttcacaatactttctacacactctttctcggttccattactgacttgagcgt 26977761  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
      |||||||||||||||||||| ||||||||||||||||||    
T  26977760 tggagtgctaacgtgcctgcaggcacctttcgttccaccgc 26977720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 173 - 337
Target Start/End: Complemental strand, 16050512 - 16050348
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    ||||||||||| ||   |||||||| ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||       
T  16050512 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttg 16050413  T
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaa 337  Q
    ||||||||||||||||||||| |||||||  ||||||||||| |||||||||||| |||||||||    
T  16050412 gagtgctaacgtgcctgcagatacctttctatccaccgcgaagactcatcgccactataccggaa 16050348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 106 - 323
Target Start/End: Original strand, 23728724 - 23728942
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaaca--cgcctatataaggatgaacttgcttcaccctca 203  Q
    ||||||| |||||| |||  ||||||||||||||| |||||| | | ||||| ||||| |||||   ||||||||||||| |||||||| ||||||||||    
T  23728724 cctacacgtgtcctgctctgtccctaatcacatgccgcataatttgaagacggttatggccaacgtgcgcctatataagggtgaacttgtttcaccctca 23728823  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    || ||    ||||||||||||||||||  |||||||||||||||| |||||||| ||||||||||| || | ||||||||||||||||  ||||||||||    
T  23728824 aggtacacatcacttttcacaacacttcttacacactctttctcatttccattaatgacttgagcgtcataatgctaacgtgcctgcatccacctttcgt 23728923  T
Q  304 tccaccgcgaaaactcatcg 323  Q
    | ||||||||| ||||||||    
T  23728924 t-caccgcgaagactcatcg 23728942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 171 - 328
Target Start/End: Complemental strand, 16030515 - 16030358
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| ||   | ||||| |||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||      
T  16030515 cgcctatataagggtggcttagcttcgccctcaaggtatgattcacttttcacaacactttctacacactcttattcagttccattactgacttgagcat 16030416  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccacc 328  Q
      || || ||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  16030415 ttgactgataacgtgcctgcagacacctttcattccaccgtgaagactcatcgccacc 16030358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 128 - 354
Target Start/End: Original strand, 4601413 - 4601641
Alignment:
Q  128 cctaatcacatgctgcataactcggagacgattatgaccaa--cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaa 225  Q
    |||||||||| |  ||||||| ||||||||  |||||||||  | ||| ||||||||| |||||||||||||||||||||  |    |||  |||||||     
T  4601413 cctaatcacacggcgcataacccggagacggctatgaccaatgcgcgcgtatataagggtgaacttgcttcaccctcaagggacacatcaaatttcacag 4601512  T
Q  226 cactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgcc 325  Q
    |||||  |||||| | |||||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  4601513 cacttattacacattatttctcagtttcattactgacttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccgcgaagacttatcgcc 4601612  T
Q  326 accataccggaagtcgttaccgtcacacc 354  Q
     |||| ||||||    |||||||||||||    
T  4601613 gccatgccggaaacaattaccgtcacacc 4601641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 173 - 334
Target Start/End: Complemental strand, 34273205 - 34273044
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    |||||||||||  ||  |||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||        
T  34273205 cctatataagggcgacattgcttcaccctcaaggtatgagtcactttacacaacactttctacacactctttctcagttccgttactgacttgagcattg 34273106  T
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccg 334  Q
    |||||||||||||| |||||  ||||||||| ||||||| || |||| |||||||| |||||    
T  34273105 gagtgctaacgtgcttgcaggtacctttcgtcccaccgcaaagactcctcgccaccgtaccg 34273044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 194 - 322
Target Start/End: Original strand, 33101501 - 33101629
Alignment:
Q  194 ttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcaga 293  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||   |||||||||||||||||||      
T  33101501 ttcaccctcaagttacggttcacttttcacaacactttctacacactttttctcagttccattaccgacttgagcgttggagtgctaacgtgcctgcatg 33101600  T
Q  294 cacctttcgttccaccgcgaaaactcatc 322  Q
    |||||||| ||| || ||||| |||||||    
T  33101601 cacctttcattctacagcgaagactcatc 33101629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 193 - 328
Target Start/End: Complemental strand, 5671868 - 5671733
Alignment:
Q  193 cttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcag 292  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||||||||||| ||     
T  5671868 cttcaccttcaatgtatgattcacttttcacaacactttctacacactctttctcagttccattactaacttgagcgttggagtgctaacgtgcctacaa 5671769  T
Q  293 acacctttcgttccaccgcgaaaactcatcgccacc 328  Q
    |||||||| | |||| || | | |||||||||||||    
T  5671768 acaccttttgctccagcgggcagactcatcgccacc 5671733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 128 - 338
Target Start/End: Complemental strand, 48637704 - 48637503
Alignment:
Q  128 cctaatcacatgctgcataactcggagacgattatg--accaacacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaa 225  Q
    |||||||||| || ||||||| |||||||| |||||  || | | ||||||||||||| |||||||| |||||||||||| ||            |||||    
T  48637704 cctaatcacacgccgcataacacggagacggttatgccacgagcccgcctatataagggtgaacttgtttcaccctcaaggta------------cacaa 48637617  T
Q  226 cactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgc-gaaaactcatcgc 324  Q
    |||||  ||||  |||| | |||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||||| ||| |||||||||    
T  48637616 cacttcttacatcctctctttcagttccattactgacttgagcgtcagagtgctgacgtgcctgcaggcacctttcgttctaccgcagaagactcatcgc 48637517  T
Q  325 caccataccggaag 338  Q
    ||||||||| ||||    
T  48637516 caccataccagaag 48637503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 347
Target Start/End: Complemental strand, 25408220 - 25408040
Alignment:
Q  167 aacacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttga 266  Q
    |||||||||||  |||| |||||||||||||||||||||  |    ||||||||||||||||||  |||||||||| | |||||| ||||||||||||||    
T  25408220 aacacgcctatgaaagggtgaacttgcttcaccctcaagggacacatcacttttcacaacacttcttacacactctctttcagtttcattactgacttga 25408121  T
Q  267 gcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccg 347  Q
    ||    ||||||||||||| |||||| |||||||| |||||||||  | |||||| ||| || |||| ||||| |||||||    
T  25408120 gcattggagtgctaacgtgtctgcaggcacctttcattccaccgcagagactcattgccgccgtaccagaagttgttaccg 25408040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 1659762 - 1659899
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    ||||||||||| |||||||||| ||||| |||| |||   ||||||||||||||||||  |||||| |||||||||| ||||||| |||||||||||       
T  1659762 cctatataagggtgaacttgctccacccacaagatatttctcacttttcacaacacttcttacacattctttctcagatccattattgacttgagcgttg 1659861  T
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccg 310  Q
    ||||| |||||||  || ||||||||||||||||||||    
T  1659862 gagtgataacgtgtatgtagacacctttcgttccaccg 1659899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 354
Target Start/End: Original strand, 16299591 - 16299727
Alignment:
Q  217 ttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaa 316  Q
    ||||||||||||||  ||| ||||||||||||||| ||||||| |||||| || | ||||||||| |||| ||||||||| |||||||||||||| || |    
T  16299591 ttttcacaacacttcttacgcactctttctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccgc-aaga 16299689  T
Q  317 ctcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    ||||||||| || || ||||||||||||| || |||||    
T  16299690 ctcatcgccgccgtatcggaagtcgttacggtaacacc 16299727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 207 - 333
Target Start/End: Original strand, 5459716 - 5459841
Alignment:
Q  207 tatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcc 306  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||  |||| ||   |||||||||||| ||||||  |||||||||| ||    
T  5459716 tatgattcactttacacaacactttctacacactctttctcag-tccgttactgttttgaacgttggagtgctaacgtacctgcatgcacctttcgtccc 5459814  T
Q  307 accgcgaaaactcatcgccaccatacc 333  Q
    ||| |||| ||||||||||||| ||||    
T  5459815 accacgaagactcatcgccaccgtacc 5459841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 354
Target Start/End: Original strand, 14255051 - 14255184
Alignment:
Q  221 cacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactca 320  Q
    ||||||||||  ||||||||||||||||||| ||||| |||||||||||   |||||||| ||||| ||||| |||| ||||||||||| |||| |||||    
T  14255051 cacaacacttcttacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagactca 14255150  T
Q  321 tcgccaccataccggaagtcgttaccgtcacacc 354  Q
    ||||| ||   ||||||| | |||||||||||||    
T  14255151 tcgccgccgcgccggaagccattaccgtcacacc 14255184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 23280237 - 23280367
Alignment:
Q  175 tatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacaga 274  Q
    ||||||| | ||||||||||||||||||| |  || ||||||||||||||||||| |  |||||| ||||||||||||||||||||||||||| |   ||    
T  23280237 tatataaaggtgaacttgcttcaccctcatggcattattcacttttcacaacactat--acacacactttctcagttccattactgacttgagagtttga 23280334  T
Q  275 gtgctaacgtgcctgcagacacctttcgttcca 307  Q
    ||| |||| || |||||| ||||||||||||||    
T  23280335 gtgataacatgtctgcaggcacctttcgttcca 23280367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 168 - 336
Target Start/End: Complemental strand, 8019071 - 8018904
Alignment:
Q  168 acacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    |||||||||||||||| |||  | ||||||||| |||| ||||||||||||||| |   ||||| | |||| ||  ||||| ||||  ||||||||||||    
T  8019071 acacgcctatataagggtgacatagcttcacccccaaggtatgattcacttttcccct-actttttgcacattccatctcatttcccatactgacttgag 8018973  T
Q  268 cgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccgga 336  Q
    || |  |||||||||||||||| ||| ||||||||| ||||| |||| ||||||||||||| |||||||    
T  8018972 cgtcgtagtgctaacgtgcctgtagatacctttcgtcccaccacgaagactcatcgccaccgtaccgga 8018904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 333
Target Start/End: Complemental strand, 18246240 - 18246101
Alignment:
Q  193 cttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcag 292  Q
    ||||||||||||| ||||| ||||||||| || |||||| || ||||||||||||| ||| | |||| |||||||||   ||||| |||||||| | |||    
T  18246240 cttcaccctcaaggtatgaatcacttttctca-cactttttatacactctttctcaattctaatactcacttgagcgttggagtgttaacgtgcttacag 18246142  T
Q  293 acacctttcgttccaccgcgaaaactcatcgccaccatacc 333  Q
    ||||||||||||||||||| || ||||||| ||||| ||||    
T  18246141 acacctttcgttccaccgccaagactcatcaccaccgtacc 18246101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 347
Target Start/End: Original strand, 21682516 - 21682737
Alignment:
Q  128 cctaatcacatgctgcataactcggagacgattatgaccaac--acgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaa 225  Q
    |||||||||| || ||||||| | ||||| ||||||| ||||  |||||||||||||| |||| |||| ||||||||||| ||    | |||||||||||    
T  21682516 cctaatcacacgcagcataacccagagactattatgatcaacgcacgcctatataagggtgaatttgcgtcaccctcaaggtacacattacttttcacaa 21682615  T
Q  226 cactttctacacactct-ttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgc 324  Q
     | ||  |||||||||| |||| ||||||||||||||||||||||   |||||| ||||| |||  || ||||||||||||||| ||  | |||||||||    
T  21682616 tatttcttacacactctcttct-agttccattactgacttgagcgttggagtgcaaacgtacctataggcacctttcgttccacagcagagactcatcgc 21682714  T
Q  325 caccataccggaagtcgttaccg 347  Q
    | || |||||||||  |||||||    
T  21682715 cgccgtaccggaagctgttaccg 21682737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 192 - 324
Target Start/End: Original strand, 2140940 - 2141068
Alignment:
Q  192 gcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgca 291  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||| |||||     ||| ||||||||||||||||   |||||||||  ||||||||    
T  2140940 gcttcaccctcaaggtatggttcactttccacaacactttctacacattcttt----tttcaattactgacttgagcgttggagtgctaagttgcctgca 2141035  T
Q  292 gacacctttcgttccaccgcgaaaactcatcgc 324  Q
     ||||||||||||| |||| ||| | |||||||    
T  2141036 tacacctttcgttctaccgtgaagattcatcgc 2141068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 333
Target Start/End: Original strand, 43344451 - 43344575
Alignment:
Q  207 tatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcc 306  Q
    ||||||||||||||| |  |||||| |||||||||||||| |||| || ||||||||||||||   ||||||||||||  ||||||||||||||| | ||    
T  43344451 tatgattcacttttcccc-cactttttacacactctttct-agtttcaatactgacttgagcgttcgagtgctaacgtttctgcagacacctttcatccc 43344548  T
Q  307 accgcgaaaactcatcgccaccatacc 333  Q
    ||||| || ||||||||||||| ||||    
T  43344549 accgcaaagactcatcgccaccgtacc 43344575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 311
Target Start/End: Original strand, 21098819 - 21098956
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctt-tctcagttccattactgacttgagcgac 271  Q
    ||||||||||| ||||||||||||||||||||| ||     ||||||||| |||||||  || | ||| || | ||||||||||||||||||||| || |    
T  21098819 cctatataagggtgaacttgcttcaccctcaaggtacacaacacttttcataacactta-ta-atacttttctatcagttccattactgacttgatcgtc 21098916  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
     ||||||||| |||||||||| ||||||||||||||||||    
T  21098917 ggagtgctaatgtgcctgcagccacctttcgttccaccgc 21098956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 328
Target Start/End: Original strand, 2612632 - 2612791
Alignment:
Q  168 acacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    ||||| |||||||||| |||  | |||||| ||||||| ||||||||| ||||  |  || ||| ||||||||||| |||||||||| ||||||||||||    
T  2612632 acacgtctatataagggtgagttagcttcatcctcaaggtatgattcattttttccg-cattttttacacactcttcctcagttccaatactgacttgag 2612730  T
Q  268 cgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccacc 328  Q
    ||    | | |||||||| |||||||||||||||||||| |||| || |||| ||| ||||    
T  2612731 cgtttcaatactaacgtgtctgcagacacctttcgttcctccgcaaagactcgtcgtcacc 2612791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 12032251 - 12032300
Alignment:
Q  199 cctcaagttatgattcacttttcacaacactttctacacactctttctca 248  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  12032251 cctcaagttatgattcattttacacaacactttctacacactctttctca 12032300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 3590874 - 3590811
Alignment:
Q  244 tctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcca 307  Q
    ||||||||||||||||||||||| || | ||||||||| |||||||||  ||||||||||||||    
T  3590874 tctcagttccattactgacttgatcgtcggagtgctaaggtgcctgcatgcacctttcgttcca 3590811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 16522829 - 16522759
Alignment:
Q  237 cactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcca 307  Q
    |||||||||||| |||| ||| |||||||| ||    ||||||||||||||| ||||||||||||||||||    
T  16522829 cactctttctcaattcctttattgacttgaacgttgaagtgctaacgtgccttcagacacctttcgttcca 16522759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 46016149 - 46016096
Alignment:
Q  256 tactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccg 310  Q
    |||||| |||| || | ||||||||||||||||||| ||||||||||||||||||    
T  46016149 tactgatttgatcgtcggagtgctaacgtgcctgca-acacctttcgttccaccg 46016096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 3590947 - 3590914
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaa 204  Q
    ||||||||||||| ||||||||||||||||||||    
T  3590947 cgcctatataagggtgaacttgcttcaccctcaa 3590914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 14254891 - 14255047
Alignment:
Q  52 acaccagcttaactgcaccgtgccacacagaagtgcacccccgcgcgaggat-atcctacacatgtcctcctccatccctaatcacatgctgcataactc 150  Q
    ||||||||||   ||||||||||||||||| ||  | |   ||||||||||| | |||||||||||||  |||  |||||||||| | || |||||||      
T  14254891 acaccagcttgcgtgcaccgtgccacacaggagcacgctatcgcgcgaggatcaccctacacatgtccaactctgtccctaatcatacgccgcataacct 14254990  T
Q  151 ggagacgattatgaccaacacg--cctatataaggatgaacttgcttcaccctcaag 205  Q
    |||||   ||||||||||  ||  ||||||||||| |||||||| ||||||||||||    
T  14254991 ggagaaagttatgaccaaagcgtgcctatataagggtgaacttgtttcaccctcaag 14255047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 67 - 354
Target Start/End: Original strand, 9135225 - 9135515
Alignment:
Q  67 caccgtgccacacagaagtgcacccccgcgcgaggatatcct-acacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgac 165  Q
    ||||||||| |||||||| || ||||||| |||||||  ||| |||  ||||||||||| |||||||||||| ||| |||||| |||||||| |||||||    
T  9135225 caccgtgccgcacagaagcgcgcccccgcacgaggatcaccttacatgtgtcctcctccgtccctaatcacacgctacataacccggagacggttatgac 9135324  T
Q  166 caacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgact 263  Q
    ||| |||   |||||||||| |||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  9135325 caatacgtgtctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcacaacagtttttacacactctttctcaattccattactgact 9135424  T
Q  264 tgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    ||||||  |||||||||||||||||  |  ||||||||||||||||| ||| ||| | | || || ||| ||||  |||||||||||||||    
T  9135425 tgagcgttagagtgctaacgtgcctatatgcacctttcgttccaccgtgaagacttaacaccgccgtactggaaaccgttaccgtcacacc 9135515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 68 - 352
Target Start/End: Original strand, 13291988 - 13292275
Alignment:
Q  68 accgtgccacacagaagtgcacccccgcgcgaggat-atcctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgacc 166  Q
    |||||||||||||| || || ||  ||||| ||||| | ||||||| |||| | |||| ||||||| |||| || ||||||| |||||||| ||||| ||    
T  13291988 accgtgccacacaggagcgcgccttcgcgcaaggatcaccctacacgtgtcatgctccgtccctaaccacacgccgcataacccggagacggttatggcc 13292087  T
Q  167 aacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgactt 264  Q
    ||| |||  |||||||| | ||||||||||||||||||||| ||    ||||||||||||||||||  |||||||||||| |||||| ||||||||||||    
T  13292088 aacgcgcgcctatataatggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttttcagtttcattactgactt 13292187  T
Q  265 gagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcaca 352  Q
    |||||  ||||||||||||| |||||||||||||||| ||||||| |||| |||||||||| || | ||||||   ||||||||||||    
T  13292188 gagcgttagagtgctaacgtacctgcagacacctttccttccaccacgaagactcatcgccgccgtgccggaaactgttaccgtcaca 13292275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 65 - 354
Target Start/End: Original strand, 16986954 - 16987246
Alignment:
Q  65 tgcaccgtgccacacagaagtgcacccccgcgcgaggat-atcctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatg 163  Q
    |||||||||||||| || ||||  ||| ||| | ||||| | ||| ||| |||||| |||||||||||||||||  | ||||||  |||||||| |||||    
T  16986954 tgcaccgtgccacataggagtgtgccctcgcacaaggatcaccctgcacgtgtcctgctccatccctaatcacacaccgcataatccggagacggttatg 16987053  T
Q  164 accaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactga 261  Q
     ||||| |||  |||||||||| ||||||||||||||| | |||  |    ||||||||||||||||||  |||||||||||||||| |||||||||||     
T  16987054 gccaacgcgcgcctatataagggtgaacttgcttcacctttaagggacacatcacttttcacaacacttcttacacactctttctcaattccattactgg 16987153  T
Q  262 cttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    |||||| | ||||||||||||||||| |||  ||||||||||||||||||||| |||||| ||| || |||| |||| ||||| |||||||||    
T  16987154 cttgagtgtcagagtgctaacgtgcccgcatgcacctttcgttccaccgcgaagactcattgccgccgtaccagaagccgttagcgtcacacc 16987246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 9867938 - 9868091
Alignment:
Q  199 cctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacct 298  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| ||||||  |||||    
T  9867938 cctcaaggtatgattcacttttaacaacactttctacaaactcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcacct 9868037  T
Q  299 ttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcaca 352  Q
    ||||| |||||||||| |||| ||||| || | | ||||| |||||||||||||    
T  9868038 ttcgtcccaccgcgaagactcgtcgccgccgttctggaagccgttaccgtcaca 9868091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 323
Target Start/End: Complemental strand, 12645006 - 12644753
Alignment:
Q  68 accgtgccacacagaagtgcacccccgcgcgaggatatcctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgacca 167  Q
    ||||||||||||||||| ||||| ||||| ||||||  ||    | ||||||||||| ||  || ||||| |  ||||||| || ||||| |||||||||    
T  12645006 accgtgccacacagaagcgcacctccgcgtgaggatcacc----cgtgtcctcctccgtct-tattcacacgtcgcataacccgaagacggttatgacca 12644912  T
Q  168 acacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcac-aacactttctacacactctttctcagttccattactgactt 264  Q
    || |||  || || |||| ||||||||||||||||||||  ||  ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| |    
T  12644911 acgcgcgcctctacaagggtgaacttgcttcaccctcaacgtacaattcacttttcaccaacactttccacacactttttctcagttccattactgacct 12644812  T
Q  265 gagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcg 323  Q
    ||||| | |||||||||| ||||||||  ||||||||||||||||| ||| ||||||||    
T  12644811 gagcgtcggagtgctaacttgcctgcatgcacctttcgttccaccgtgaagactcatcg 12644753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 21161325 - 21161211
Alignment:
Q  207 tatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcc 306  Q
    ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||   ||||||||||||||||||||||| ||||||||||    
T  21161325 tatgattcacttttcacaacactttctacacacactttcttagctccattactgacttgagcgttggagtgctaacgtgcctgcagaca-ctttcgttcc 21161227  T
Q  307 accgcgaaaactcatc 322  Q
    |||||||| |||||||    
T  21161226 accgcgaagactcatc 21161211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 171 - 353
Target Start/End: Complemental strand, 5863307 - 5863125
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    |||||||| |||| |||  ||||| |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||     
T  5863307 cgcctatacaagggtgacattgctccaccctcaaggtatgattcactttttacaacattttctacacactctttctcagttcgattactgacttgagcgt 5863208  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacac 353  Q
      |||||||||||||| ||||  ||  |||||||| |||| ||| ||||||||| ||| ||||| ||  ||||||| ||||||    
T  5863207 ttgagtgctaacgtgcttgcacgcaaatttcgttctaccgtgaagactcatcgctaccgtaccgaaaaccgttaccatcacac 5863125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 171 - 311
Target Start/End: Original strand, 26762882 - 26763022
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    |||||||||| || ||  ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||     
T  26762882 cgcctatatatgggtgtccttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactatttatgagttcctttactgacttgagcgt 26762981  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
      |||||||||||||||||||   |||||||| ||||||||    
T  26762982 tggagtgctaacgtgcctgcaagaacctttcgctccaccgc 26763022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 177 - 311
Target Start/End: Complemental strand, 7486659 - 7486525
Alignment:
Q  177 tataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagt 276  Q
    ||||||| ||||||| ||||||| | |||  ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||   ||||    
T  7486659 tataagggtgaactttcttcacctttaagggatgattcacttttcacaacaccttctacacaatctttctcagttccattactgaattgagcgttggagt 7486560  T
Q  277 gctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    |||||||||||||||  |||||||| |||||||||    
T  7486559 gctaacgtgcctgcatgcacctttcattccaccgc 7486525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 352
Target Start/End: Complemental strand, 34854362 - 34854182
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||| |||||||| ||||||||||   ||    ||||||||||||||| ||  ||||||||||||||||||| ||||||| ||||||||| |    
T  34854362 gcctatataagggtgaacttgtttcaccctcagagtacacatcacttttcacaacatttcttacacactctttctcagtttcattactaacttgagcgtc 34854263  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcaca 352  Q
    |||||||||||||| ||||| ||||| ||||||||||| |||| | ||||| |  |||||| | |||| ||||||||||||    
T  34854262 agagtgctaacgtgtctgcaaacaccgttcgttccaccacgaacattcatcactgccatacggaaagttgttaccgtcaca 34854182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 171 - 333
Target Start/End: Complemental strand, 29373566 - 29373404
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||| ||| |||  |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| || ||  ||||||||||||      
T  29373566 cgcctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaacattttctacacactctttctcaattacacaactgacttgagcat 29373467  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccatacc 333  Q
      |||| ||||| ||||||||  ||||||||||| |||||| |||||||||| ||||| ||||    
T  29373466 tggagtcctaacatgcctgcatgcacctttcgtttcaccgcaaaaactcatcaccaccgtacc 29373404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 39879470 - 39879364
Alignment:
Q  208 atgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcca 307  Q
    ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||  | |||| ||||||| |||||| ||||||||||||||    
T  39879470 atgattcactttttacaacactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttcca 39879371  T
Q  308 ccgcgaa 314  Q
    || ||||    
T  39879370 ccacgaa 39879364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 10287567 - 10287706
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| | |||||| | |||||||||| |||   ||||||||||||||||||  |||||||| |||||||| |||||||||||||||||||     
T  10287567 cgcctatataagggtaaacttgttacaccctcaaggtatctctcacttttcacaacacttcttacacactttttctcagatccattactgacttgagcgt 10287666  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccg 310  Q
     |  ||||||||||||||||||  |||||| |||||||||    
T  10287667 taaggtgctaacgtgcctgcaggaacctttggttccaccg 10287706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 132 - 310
Target Start/End: Original strand, 5925405 - 5925585
Alignment:
Q  132 atcacatgctgcataactcggagacgattatg--accaacacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacact 229  Q
    |||||| || ||||||| |||||||| |||||  || | | |||||| |||||| |||||||||||||||||||||  |     |||||||||| |||||    
T  5925405 atcacacgccgcataacccggagacggttatgccacgagcgcgcctacataagggtgaacttgcttcaccctcaaggaacacaacacttttcacgacact 5925504  T
Q  230 ttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccg 310  Q
    |  || ||  ||| ||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||    
T  5925505 tcttagactttctctctcagttccattactgacttgatcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 5925585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 311
Target Start/End: Complemental strand, 18774146 - 18773961
Alignment:
Q  128 cctaatcacatgctgcataactcggagacgattatgaccaa---cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcaca 224  Q
    |||||||| | || |||||||||||||||| ||||| ||||   |||| |||||||||| |||| ||| |||||||||||| ||     ||||||||||     
T  18774146 cctaatcatacgccgcataactcggagacggttatg-ccaagagcacgtctatataagggtgaatttgtttcaccctcaaggtacacaacacttttcact 18774048  T
Q  225 acactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    ||||||  |  ||  ||| |||||||||||||||||| |||| || |  ||||||||||||||||||  ||||||||||||||||||    
T  18774047 acacttctttgactttctctctcagttccattactgatttgatcgtcgaagtgctaacgtgcctgcatgcacctttcgttccaccgc 18773961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 1979139 - 1979044
Alignment:
Q  214 cacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccacc 309  Q
    |||| ||||||||||||  || ||  ||| |||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||| ||||    
T  1979139 cactcttcacaacacttcttagactttctctctcagttccattactgacttgagcgtcagagtactaacgtgcttgcaggcacctttcgtttcacc 1979044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 43172007 - 43172114
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| |||| |||||||||||||||  |||||||||||||||||||||||         | ||||||||||||||||| ||||||||||      
T  43172007 cgcctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaacact---------cactttctcagttccattattgacttgagcat 43172097  T
Q  271 cagagtgctaacgtgcc 287  Q
      |||||||||||||||    
T  43172098 tggagtgctaacgtgcc 43172114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 16204409 - 16204340
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactct 242  Q
    ||||||||||| |||| || ||||||||| ||| |||| |||||||||||||||||||| ||||||||||    
T  16204409 cctatataagggtgaattttcttcacccttaaggtatggttcacttttcacaacactttatacacactct 16204340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 347
Target Start/End: Original strand, 4781471 - 4781647
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctt-tctcagttccattactgacttgagcg 269  Q
    ||||||||||||| ||||||||||||||||||||| ||     |||||| |||||| ||  ||| | ||| || ||||| ||||||||||||||||| ||    
T  4781471 cgcctatataagggtgaacttgcttcaccctcaaggtacacaacactttacacaactctc-cta-agacttttatctcaattccattactgacttgatcg 4781568  T
Q  270 acagagtgctaacgtgcctgcagacacctttcgttccaccgc-gaaaactcatcgccaccataccggaagtcgttaccg 347  Q
     ||||| ||||||||||| | || ||||||||||||| |||| |||    | ||||| || ||||||||||||||||||    
T  4781569 tcagagggctaacgtgccaggaggcacctttcgttcctccgcagaaggagcttcgccgccgtaccggaagtcgttaccg 4781647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 347
Target Start/End: Original strand, 4813902 - 4814078
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctt-tctcagttccattactgacttgagcg 269  Q
    ||||||||||||| ||||||||||||||||||||| ||     |||||| |||||| ||  ||| | ||| || ||||| ||||||||||||||||| ||    
T  4813902 cgcctatataagggtgaacttgcttcaccctcaaggtacacaacactttacacaactctc-cta-agacttttatctcaattccattactgacttgatcg 4813999  T
Q  270 acagagtgctaacgtgcctgcagacacctttcgttccaccgc-gaaaactcatcgccaccataccggaagtcgttaccg 347  Q
     ||||| ||||||||||| | || ||||||||||||| |||| |||    | ||||| || ||||||||||||||||||    
T  4814000 tcagagggctaacgtgccaggaggcacctttcgttcctccgcagaaggagcttcgccgccgtaccggaagtcgttaccg 4814078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 2226661 - 2226601
Alignment:
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccatacc 333  Q
    ||||||||| ||||||||||||||||||||| |||||| ||| | |||||||||| |||||    
T  2226661 gagtgctaatgtgcctgcagacacctttcgtcccaccgtgaagattcatcgccactatacc 2226601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 5929024 - 5929100
Alignment:
Q  213 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctg 289  Q
    ||||||||||||||||||  ||||| |||| | |||||||||||||||||||||| |   ||||||||| |||||||    
T  5929024 tcacttttcacaacacttcttacactctctctttcagttccattactgacttgagtgttggagtgctaatgtgcctg 5929100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 16203840 - 16203768
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttc 245  Q
    ||||||||||| |||  || ||||||||| ||| |||| ||||||||||| |||||||| |||||||||||||    
T  16203840 cctatataagggtgacttttcttcacccttaaggtatggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 324
Target Start/End: Original strand, 9573459 - 9573550
Alignment:
Q  233 tacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgc 324  Q
    |||||||||||||||||||||  || ||||||| |||   |||||||||||||||||||| ||||  | |||||||||| || |||| ||||    
T  9573459 tacacactctttctcagttcccatattgacttgtgcgttggagtgctaacgtgcctgcaggcaccccttgttccaccgcaaagactcgtcgc 9573550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 12265097 - 12265156
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacacttt 231  Q
    |||||||||||| ||||||||||| ||||||||| || |  |||||||||||||||||||    
T  12265097 gcctatataagggtgaacttgcttgaccctcaaggtacgcatcacttttcacaacacttt 12265156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 26562935 - 26562898
Alignment:
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccg 310  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  26562935 gagtgctaatgtgcctgcagacacctttcgttccaccg 26562898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 114 - 310
Target Start/End: Complemental strand, 20120526 - 20120328
Alignment:
Q  114 tgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatga 211  Q
    ||||| ||||||||| |||||||| || |||||||   ||||||||||||||||||||||  ||||||||||||| ||||| || ||||||||| |||||    
T  20120526 tgtccgcctccatccttaatcacacgccgcataacctagagacgattatgaccaacacgcacctatataaggatggacttgttttaccctcaaggtatga 20120427  T
Q  212 ttcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccg 310  Q
    ||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||    
T  20120426 ttcacttatcacaccactttccacacactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagacacctttcgttccaccg 20120328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 114 - 309
Target Start/End: Complemental strand, 15825333 - 15825136
Alignment:
Q  114 tgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatga 211  Q
    |||||| |||| ||| ||| |||| || |||||||||| ||||| ||||||||||| |||  ||||| |||| ||||||||||||||||||||| ||       
T  15825333 tgtcctactccgtccttaaacacacgccgcataactcgaagacggttatgaccaacgcgcgcctatacaagggtgaacttgcttcaccctcaaggtacac 15825234  T
Q  212 ttcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccacc 309  Q
     | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  15825233 atgacttttcacaacactttctacacactctttctcagttccattaccgacttgagcgtcaaagtgctaacgtgcctgcagacacatttcgttccacc 15825136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 171 - 354
Target Start/End: Complemental strand, 3586483 - 3586300
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||     
T  3586483 cgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctactcactttttctcagttccattactgacttgagcgt 3586384  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    | |||| |||||||||| |||  |||||||| ||||||||| || ||||| || | || ||||||||  | | |||||||||||    
T  3586383 cggagtcctaacgtgccggcatgcacctttcattccaccgcaaagactcaacgtcgccgtaccggaaaccttcaccgtcacacc 3586300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 323
Target Start/End: Complemental strand, 36267620 - 36267466
Alignment:
Q  169 cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagc 268  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  36267620 cacgtctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactctttctcagtttcattactgacttgagc 36267521  T
Q  269 gacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcg 323  Q
    |   ||||| |||| ||| ||||| |||||||| |||||| ||||| ||||||||    
T  36267520 gttggagtgttaacatgcatgcaggcacctttcattccactgcgaagactcatcg 36267466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 173 - 331
Target Start/End: Original strand, 45258125 - 45258283
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    ||||||||||| |||  |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||| ||||||| ||||||||        
T  45258125 cctatataagggtgactttgcttcaccctcaaggtatgattcacttttcacaacactttcgacacattctttcttagtttcattacttacttgagctttg 45258224  T
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccata 331  Q
    ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  45258225 gagtgttaacgtgcctgcagacatctttcgttccaccgcgaagactcatcgccaccata 45258283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 106 - 354
Target Start/End: Original strand, 10923069 - 10923319
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgcct--atataaggatgaacttgcttcaccctca 203  Q
    ||||||| ||||||| ||| || ||||||||| || ||||||  || ||||  ||||||||||||| | |  |||||||| |||||||||||||||||||    
T  10923069 cctacacgtgtcctcttccgtctctaatcacacgccgcataagccgaagactgttatgaccaacacacgtgtatataagggtgaacttgcttcaccctca 10923168  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    ||  |   ||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||| | | ||||| |||||||||| || |||||||||||    
T  10923169 aggcacacttcacttttcacagcactttctacacactctttataagttccataactgacttgagtgtcggagtgataacgtgcctacatacacctttcgt 10923268  T
Q  304 tccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    ||||||||||| ||| ||| ||||| | |||||   | |||||||||||||    
T  10923269 tccaccgcgaagactaatcaccaccgttccggagaccattaccgtcacacc 10923319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 190 - 326
Target Start/End: Complemental strand, 12169074 - 12168937
Alignment:
Q  190 ttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttg-agcgacagagtgctaacgtgcct 288  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||   ||||| ||| ||||||    
T  12169074 ttgcttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagttccattactgacttgaagcgttggagtgttaatgtgcct 12168975  T
Q  289 gcagacacctttcgttccaccgcgaaaactcatcgcca 326  Q
    ||||||||||||||||||||||| || ||| |||||||    
T  12168974 gcagacacctttcgttccaccgcaaagacttatcgcca 12168937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 171 - 336
Target Start/End: Original strand, 19919037 - 19919202
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||  |||  |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||  |||     
T  19919037 cgcctatataagagtgatattgcttcatcctcaaggtatgattcacttttcacaacactttctacatactctttctcatttccattattgactttggcgt 19919136  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccgga 336  Q
     ||||| |||| || ||||||| |||||||||||||||| |||| ||| |||||||||||||||||    
T  19919137 tagagttctaatgttcctgcaggcacctttcgttccaccacgaagactgatcgccaccataccgga 19919202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 24499911 - 24499777
Alignment:
Q  169 cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagc 268  Q
    ||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  24499911 cacgcctttataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacattttctacacactctttctcatttccattactgacttgagc 24499812  T
Q  269 gacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    |   |||||||||||| |||  || ||||||||||    
T  24499811 gttggagtgctaacgttcctagaggcacctttcgt 24499777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 106 - 324
Target Start/End: Original strand, 19050339 - 19050559
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacac--gcctatataaggatgaacttgcttcaccctca 203  Q
    |||||||||||||| |||||| |||||||| | || ||||||| |||||    ||||| ||||| |  |||||||||||| ||||||| |||||| ||||    
T  19050339 cctacacatgtcctgctccatgcctaatcatacgccgcataacccggagttagttatggccaacgcaagcctatataagggtgaacttacttcactctca 19050438  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
     | ||    ||||||||||||||||||  ||||| |||||||| ||||| |||||||||||||||| ||||||||||||| | ||||| | |||||||||    
T  19050439 gggtacacatcacttttcacaacacttcttacactctctttcttagttctattactgacttgagcgtcagagtgctaacgggtctgcaaatacctttcgt 19050538  T
Q  304 tccaccgcgaaaactcatcgc 324  Q
    ||||||||||| |||||||||    
T  19050539 tccaccgcgaacactcatcgc 19050559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 171 - 354
Target Start/End: Complemental strand, 18135991 - 18135808
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| ||||||||||||||| || || |||   |||||||| |||||||||  ||||||||||||||||||||||||||| |||||||||     
T  18135991 cgcctatataagggtgaacttgcttcaccttctaggtatacatcacttttgacaacacttcttacacactctttctcagttccattactaacttgagcgt 18135892  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    |||||| ||||||||||| ||| |||||||| | |||||| ||| ||||| |||| ||  |||| |||| |||||| |||||||    
T  18135891 cagagtactaacgtgcctacaggcacctttcatcccaccgtgaagactcaacgccgccgcaccgaaagtggttaccatcacacc 18135808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 128 - 347
Target Start/End: Complemental strand, 29711181 - 29710962
Alignment:
Q  128 cctaatcacatgctgcataactcggagacgattatgaccaa--cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaa 225  Q
    ||||||||||||| ||||||| |||||||| ||| | ||||  | ||||||||||||| ||||||||||||||||||||| ||    |||||||||||||    
T  29711181 cctaatcacatgccgcataacacggagacggttaagcccaatgcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaa 29711082  T
Q  226 cactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgcc 325  Q
    |||||  ||||| |||||||  | |||||||| |||||||||||   |||||||||||||| |||| |||||||| ||||||||||||| || |||||||    
T  29711081 cacttcgtacactctctttc--aattccattagtgacttgagcgttggagtgctaacgtgcatgcatacaccttttgttccaccgcgaagacgcatcgcc 29710984  T
Q  326 accataccggaagtcgttaccg 347  Q
     |  ||| ||||| ||||||||    
T  29710983 gctgtactggaagccgttaccg 29710962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 106 - 353
Target Start/End: Original strand, 15390489 - 15390738
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaa--cacgcctatataaggatgaacttgcttcaccctca 203  Q
    ||||||| |||||| |||| ||||||||||||    ||||||| ||| |||| ||||| || |  | ||||||||||||| |||||||||||||||||||    
T  15390489 cctacacgtgtcctgctccgtccctaatcacacatcgcataacccggggacggttatggcctacgcgcgcctatataagggtgaacttgcttcaccctca 15390588  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    || ||    ||||||||||||||||||  |||||||| ||| | |||||||| ||| ||||||||| || ||||||||||||||   || || |||||||    
T  15390589 aggtacacatcacttttcacaacacttcttacacactgtttattagttccatcacttacttgagcgtcaaagtgctaacgtgccaataggcagctttcgt 15390688  T
Q  304 tccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacac 353  Q
    |||| |||||| |||||||||  || | ||||||| ||||||||||||||    
T  15390689 tccatcgcgaagactcatcgctgccgtgccggaagccgttaccgtcacac 15390738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 192 - 326
Target Start/End: Complemental strand, 45715094 - 45714960
Alignment:
Q  192 gcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgca 291  Q
    |||||||| ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||    
T  45715094 gcttcaccttcaaggtatgattcaattttcaccacactttttacacactctttctcagtttcattactgacttgagcgttggagtgctaacgtgcctgca 45714995  T
Q  292 gacacctttcgttccaccgcgaaaactcatcgcca 326  Q
      ||||||||||||||||  ||| |||||||||||    
T  45714994 tgcacctttcgttccaccaggaagactcatcgcca 45714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 175 - 334
Target Start/End: Original strand, 12127638 - 12127797
Alignment:
Q  175 tatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacaga 274  Q
    ||||||||| |||  ||||||||||  |||  ||||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||||||   ||    
T  12127638 tatataaggttgacattgcttcaccaccaaagtatgattcacttttcacaacactttctacacacacgttcttagtttcattactgacttgagcgttgga 12127737  T
Q  275 gtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccg 334  Q
    ||||||||||||||||||  ||||||||| |||||||||| || |||| ||||| |||||    
T  12127738 gtgctaacgtgcctgcaggtacctttcgtcccaccgcgaagacccatcaccaccgtaccg 12127797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 90 - 354
Target Start/End: Complemental strand, 29138106 - 29137838
Alignment:
Q  90 ccccgcgcgaggat-atcctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacg--cctatataaggatg 186  Q
    |||||||||||||| | ||||||| ||| || |||| |||||||||||| || |||||||||||||| | ||||||||||| ||  || |||||  | ||    
T  29138106 ccccgcgcgaggattaccctacacgtgtactactccgtccctaatcacacgcagcataactcggagatggttatgaccaacgcgtgcccatatagaggtg 29138007  T
Q  187 aacttgcttcaccctcaagttatgat-tcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtg 285  Q
     ||||||||||| |||  | ||   | ||||||| ||||||| ||  ||||||||||||||||||| ||||| ||||||||||| | | ||||||||||     
T  29138006 gacttgcttcactctcggggtacattctcactttccacaacatttcttacacactctttctcagttgcattaatgacttgagcgtcggtgtgctaacgta 29137907  T
Q  286 cctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    |||||||||| ||||||||||||| |||  |||||||| | || | ||||||| ||||||| |||||||    
T  29137906 cctgcagacatctttcgttccacctcgatgactcatcgtcgccgtgccggaagccgttaccatcacacc 29137838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 193 - 337
Target Start/End: Original strand, 27846512 - 27846656
Alignment:
Q  193 cttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcag 292  Q
    ||||||||||||| ||  ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||    
T  27846512 cttcaccctcaaggtacaattcactttacacaacactttctacaaactgtttctcagttccattactgacttgatcgttggagtgctaacgtgcctgcag 27846611  T
Q  293 acacctttcgttccaccgcgaaaactcatcgccaccataccggaa 337  Q
     ||| |||||| | || ||||| |||||| |||||| ||||||||    
T  27846612 gcacttttcgtccaactgcgaagactcattgccaccgtaccggaa 27846656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 18770392 - 18770296
Alignment:
Q  213 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcc--tgcagacacctttcgttcca 307  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||  || || ||||||||||||||    
T  18770392 tcacttttcacaacactttctacacactctttctcaatttcattactgacttgagcgtcagagtgctaacgtgcctatgtaggcacctttcgttcca 18770296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 18772426 - 18772239
Alignment:
Q  116 tcctcctccatccct-aatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgat 212  Q
    ||||||||||||| | ||||||| || ||||||  |||||||  |||||||||||  |   |||||||||| ||||||||||||||||||||| |         
T  18772426 tcctcctccatccattaatcacacgccgcataatccggagacagttatgaccaacgtgtgtctatataagggtgaacttgcttcaccctcaaggtgcacg 18772327  T
Q  213 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgtt 304  Q
    |||||||||||||||||||||||||||||||    ||||||||||||   ||||||  ||||||||||||||||||||| ||||||||||||    
T  18772326 tcacttttcacaacactttctacacactctt----agttccattactactttgagcatcagagtgctaacgtgcctgcaaacacctttcgtt 18772239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 107 - 307
Target Start/End: Original strand, 24157211 - 24157413
Alignment:
Q  107 ctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgcc--tatataaggatgaacttgcttcaccctcaa 204  Q
    ||||||||||||| | ||   ||||||||||| | ||||||| |||||||  ||| | |||||||||   ||||||||| ||||||||||||||||||||    
T  24157211 ctacacatgtccttccccgctcctaatcacataccgcataacccggagacagttagggccaacacgcgcttatataagggtgaacttgcttcaccctcaa 24157310  T
Q  205 gttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgtt 304  Q
    | ||      ||||||||||||||||  || ||  | | |||||||||||||||||||||||||| |||||||||||||||| || || |||||||||||    
T  24157311 ggtacacaatacttttcacaacacttcttagactttatctctcagttccattactgacttgagcgtcagagtgctaacgtgcatgtaggcacctttcgtt 24157410  T
Q  305 cca 307  Q
    |||    
T  24157411 cca 24157413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 23257904 - 23257781
Alignment:
Q  168 acacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    |||||||||||||||| ||| |||| |||||||||||| ||  ||||||||||| || |||||||||||||||| || ||| |||| | |||||||||||    
T  23257904 acacgcctatataagggtgaccttgattcaccctcaaggtacaattcacttttccca-cactttctacacactccttgtcatttccttcactgacttgag 23257806  T
Q  268 cgacagagtgctaacgtgcctgcag 292  Q
    || || ||||||| || ||||||||    
T  23257805 cgtcaaagtgctatcgcgcctgcag 23257781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 30638628 - 30638500
Alignment:
Q  226 cactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgcc 325  Q
    ||||||| || |||||||||| ||||||||||||||| |||||| |  |||| ||||||| ||| ||||| ||||| |||||||||||  ||||| | ||    
T  30638628 cactttccacgcactctttcttagttccattactgacatgagcgtcgaagtgttaacgtgtctgtagacatctttctttccaccgcgatgactcaacacc 30638529  T
Q  326 accataccggaagtcgttaccgtcacacc 354  Q
    ||| |||| |||| | |||||||||||||    
T  30638528 accctaccagaagccattaccgtcacacc 30638500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 30638722 - 30638657
Alignment:
Q  108 tacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgc 173  Q
    ||||| ||||||||||||||||||||||||||| ||||||| || ||||  |||||||||||||||    
T  30638722 tacacgtgtcctcctccatccctaatcacatgccgcataacccgcagacagttatgaccaacacgc 30638657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 36022551 - 36022447
Alignment:
Q  200 ctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctt 299  Q
    |||||| ||||||||||||| | || |||||| |||| |||||||||||||  || ||||||||||||||  |||||| |||||||||| || | |||||    
T  36022551 ctcaagatatgattcactttgctca-cactttttacaaactctttctcagtctcaatactgacttgagcgttagagtgttaacgtgcctacatatacctt 36022453  T
Q  300 tcgttc 305  Q
    ||||||    
T  36022452 tcgttc 36022447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 24319032 - 24318893
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctt-tctcagttccattactgacttgagcg 269  Q
    ||||||||||||| ||||||||||||||||||||  ||     ||||||||||||| ||  ||| | ||| || || ||||||||||||| |||||| ||    
T  24319032 cgcctatataagggtgaacttgcttcaccctcaatgtacacaacacttttcacaactctc-cta-agacttttctcccagttccattactaacttgatcg 24318935  T
Q  270 acagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
     | || ||||||||||||||||| | ||||||||||||||||    
T  24318934 tcggaatgctaacgtgcctgcaggcgcctttcgttccaccgc 24318893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 24755549 - 24755452
Alignment:
Q  210 gattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcca 307  Q
    |||||||||||||||||| |||||||||||| ||||  |||||||| ||||||||||| |   |||| ||||||||| || |  || |||||||||||    
T  24755549 gattcacttttcacaacaatttctacacactttttcagagttccatcactgacttgagggttggagtactaacgtgcttgtatgcaactttcgttcca 24755452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 327
Target Start/End: Complemental strand, 17672094 - 17671937
Alignment:
Q  168 acacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    |||||||||| ||||| |||  | ||||||||| |||| ||||||||||||||| || ||||||  ||| | ||  ||||| ||||   ||||| |||||    
T  17672094 acacgcctatttaagggtgacttagcttcaccc-caaggtatgattcacttttccca-cacttttcacaaattccatctcatttcctacactgatttgag 17671997  T
Q  268 cgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccac 327  Q
    |    ||| ||||||||| |||||||||||||||||||||||  ||| ||||||||||||    
T  17671996 cattggagcgctaacgtgtctgcagacacctttcgttccaccatgaagactcatcgccac 17671937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 18134418 - 18134340
Alignment:
Q  193 cttcaccctcaagttatgattcacttttcacaacacttt--ctacacactctttctcagttccattactgacttgagcg 269  Q
    ||||||||||||| ||  ||||| ||||||||| |||||  ||||| ||||||||||| ||||||||||| ||| ||||    
T  18134418 cttcaccctcaaggtacaattcatttttcacaatactttttctacatactctttctcaattccattactggctttagcg 18134340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 19290631 - 19290557
Alignment:
Q  129 ctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccct 201  Q
    ||||||| | |||||||||| |||||||| |||||||| |  |||  |||||||||| |||||||||||||||||    
T  19290631 ctaatcatacgctgcataacccggagacggttatgacccaagcgcatctatataagggtgaacttgcttcaccct 19290557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 28426178 - 28426233
Alignment:
Q  256 tactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    ||||||||||| |  | ||||||||| |||||||||| ||||||||||||||||||    
T  28426178 tactgacttgatcatcggagtgctaatgtgcctgcaggcacctttcgttccaccgc 28426233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 17626915 - 17626865
Alignment:
Q  277 gctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccac 327  Q
    ||||||||| |||||||||||||||||||||||   || ||||||||||||    
T  17626915 gctaacgtgtctgcagacacctttcgttccaccataaagactcatcgccac 17626865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 74 - 350
Target Start/End: Original strand, 431187 - 431466
Alignment:
Q  74 ccacacagaagtgcacccccgcgcgaggatatcct-acacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacg 172  Q
    ||||||||||| || |||||||  ||||||  ||| |||| |||||||||||||||||||||||| |||||||||| || ||||  |||||| |||||||    
T  431187 ccacacagaagcgctcccccgcatgaggatcaccttacacgtgtcctcctccatccctaatcacacgctgcataacccgcagacagttatgagcaacacg 431286  T
Q  173 c--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    |  |||||||||| || || |||||||||||||||  |  |||||||||||||| ||||||| || ||||||||||||||||||||| |||||||||||     
T  431287 cgcctatataagggtggacatgcttcaccctcaagggacaattcacttttcacagcactttccacgcactctttctcagttccattattgacttgagcgt 431386  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtca 350  Q
    |  |||||||||||| ||| || |||||||| |||||||||||| ||||| | ||| | ||||||||| |||||||||||    
T  431387 cgaagtgctaacgtgtctgtaggcacctttctttccaccgcgaagactcaacaccagcctaccggaagccgttaccgtca 431466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 169 - 354
Target Start/End: Original strand, 17143718 - 17143903
Alignment:
Q  169 cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagc 268  Q
    ||||| ||||||||| |||  ||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17143718 cacgcttatataagggtgatgttgtttcacccccaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagc 17143817  T
Q  269 gacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    | | ||||||||||||||||    ||||||||| | |||||| ||| |||||   || ||||||||||||| ||| ||||||||||    
T  17143818 gtcggagtgctaacgtgcctaagaacacctttcatcccaccgtgaagactcaaaacctccataccggaagttgttgccgtcacacc 17143903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 106 - 309
Target Start/End: Complemental strand, 12516372 - 12516167
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaa--cacgcctatataaggatgaacttgcttcaccctca 203  Q
    ||||||| |||||| |||| ||||||||||||||  ||||||  |||||||| ||||| ||||  ||| ||||||||| | |||||||||||||||||||    
T  12516372 cctacacgtgtcctgctccgtccctaatcacatgtcgcataaggcggagacggttatggccaaggcacacctatataaaggtgaacttgcttcaccctca 12516273  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    || ||    ||||||||||||||||||  |||||| |||||||||||||||||||| ||||||||| | ||||||||||||| |||||| ||||||||||    
T  12516272 aggtacatatcacttttcacaacacttattacacaatctttctcagttccattactaacttgagcgtcggagtgctaacgtgtctgcaggcacctttcgt 12516173  T
Q  304 tccacc 309  Q
    | ||||    
T  12516172 ttcacc 12516167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 172 - 340
Target Start/End: Original strand, 9801056 - 9801223
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |      
T  9801056 gcctatataagggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctctgttctattactgacttgagtg-t 9801154  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtc 340  Q
     |||||||||||||| ||||| ||||||||||||||| ||||| |||  ||| |||| ||| |||||||    
T  9801155 tgagtgctaacgtgcttgcaggcacctttcgttccactgcgaagacttttcgtcaccgtactggaagtc 9801223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 56 - 320
Target Start/End: Complemental strand, 1771062 - 1770796
Alignment:
Q  56 cagcttaactgcaccgtgccacacagaagtgcacccccgcgcgaggatatcctacacatgtcctcctccatccctaatcacatgctgcataactcggaga 155  Q
    ||||| || ||||| |||||||| |||||||| |||||||||||||||  |||  || |||||||   | |||||||||| | || |||||| |||||||    
T  1771062 cagctcaagtgcactgtgccacatagaagtgcgcccccgcgcgaggatcacctt-acgtgtcctctatcgtccctaatcatacgccgcataattcggaga 1770964  T
Q  156 cgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagtt--atgattcacttttcacaacactttctacacactctttctcagtt 251  Q
    || |||||  |||| |||  ||||||||||  |||||||||||| |||||||    ||||| |||||||||||||||||||||||||||||| |||||||    
T  1770963 cggttatgcacaacgcgcacctatataagggcgaacttgcttcatcctcaaggcgcatgat-cacttttcacaacactttctacacactcttcctcagtt 1770865  T
Q  252 ccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactca 320  Q
    |||||||| ||||||||| | |||| ||||| ||| |||||||||||||| ||||||||| || |||||    
T  1770864 ccattactaacttgagcgtcggagtactaacatgcttgcagacacctttccttccaccgcaaagactca 1770796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 171 - 341
Target Start/End: Original strand, 14860070 - 14860240
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| ||||||||||||||||||||| ||    ||||||||||||||||||  |||| ||| |||||||||||||||||||| |||||       
T  14860070 cgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacaaactgtttctcagttccattactgagttgagaat 14860169  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcg 341  Q
    ||||||||||| |||||||||  |||||||||||||||| |||| | ||||||||||||| | ||||||||    
T  14860170 cagagtgctaatgtgcctgcaagcacctttcgttccaccacgaagattcatcgccaccatgctggaagtcg 14860240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 49 - 320
Target Start/End: Original strand, 17485472 - 17485744
Alignment:
Q  49 agcacaccagcttaactgcaccgtgccacacagaagtgcacccccgcgcgaggatatcc-tacacatgtcctcctccatccctaatcacatgctgcataa 147  Q
    ||||| ||||||||| || | ||||||||||||||| || |||| || |||||||  || ||||| |||| || | | || ||||||||| || ||||||    
T  17485472 agcacgccagcttaaatgtatcgtgccacacagaagcgcgccccagcacgaggatcgccctacacgtgtcatctttcgtcactaatcacacgcagcataa 17485571  T
Q  148 ctcggagacgattatgaccaacacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctc 247  Q
    | |||||||||||||||||||| |||   ||||    |||  |||||||||||||||| ||  ||||| ||| ||||||| | ||||||||||| |||||    
T  17485572 cccggagacgattatgaccaacgcgcgcctatacacgtgattttgcttcaccctcaaggtactattcattttacacaacattctctacacactccttctc 17485671  T
Q  248 agttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactca 320  Q
    | ||||||||||||||||||||   | ||||||| |||||  ||||||||||||||||||||||||| |||||    
T  17485672 aattccattactgacttgagcgttggggtgctaatgtgcccacagacacctttcgttccaccgcgaagactca 17485744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 153 - 354
Target Start/End: Complemental strand, 20622548 - 20622343
Alignment:
Q  153 agacgattatgaccaacac--gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactt--tctacacactctttctca 248  Q
    ||||| ||||| |||||||  || ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||  |||||||||| ||||||     
T  20622548 agacggttatgcccaacacatgcatatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaccactttatctacacactatttctct 20622449  T
Q  249 gttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgt 348  Q
     |  ||||||||||||||||| || |||| |||| |||||||||  |||||||||| ||| ||||| ||||| |||  || |||||||| ||||| ||||    
T  20622448 atctcattactgacttgagcgtcaaagtgttaacatgcctgcaggaacctttcgtttcactgcgaagactcaacgcggccgtaccggaaatcgttgccgt 20622349  T
Q  349 cacacc 354  Q
    ||||||    
T  20622348 cacacc 20622343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 2311824 - 2311970
Alignment:
Q  190 ttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctg 289  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||  ||| || |||| |||||||   ||||||||||||  |||    
T  2311824 ttgcttcaccctcaaggtatgattcacctttcacaacactttctacacattctttctcaaatcccttgctgatttgagcgttggagtgctaacgtatctg 2311923  T
Q  290 cagacacctttcgttccaccgcgaaaactcatcgccaccataccgga 336  Q
    |||||||||||| ||||||| |||| |||| |||||||| |||||||    
T  2311924 cagacacctttcattccaccacgaagactcttcgccaccgtaccgga 2311970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 354
Target Start/End: Original strand, 12731414 - 12731715
Alignment:
Q  56 cagcttaactgcaccgtgccacacagaagtgcacccccgcgcgaggatatcct-acacatgtcctcctccatccctaatcacatgctgcataactcggag 154  Q
    |||||||  ||||||||||||||||| ||||| ||| |||||||| ||  ||| |||  |||||| |||  |||| ||||||| || ||||||| || ||    
T  12731414 cagcttacatgcaccgtgccacacaggagtgcgccctcgcgcgagaatcaccttacatgtgtcctactctgtcccaaatcacacgccgcataacccgaag 12731513  T
Q  155 acgattatgaccaac--acgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttc 252  Q
    ||  ||||||||| |  || | ||||||||| ||||||||||||||||||||| |     ||||||||||||||||||  || |||||||||||||||||    
T  12731514 acagttatgaccagcgcacacatatataagggtgaacttgcttcaccctcaaggttcacatcacttttcacaacacttcttatacactctttctcagttc 12731613  T
Q  253 cattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcaca 352  Q
    ||||| |||| |||||| | |||| ||||| ||  || || |||| ||||||||||| |||| |||| ||||| || | ||||||| | |||||||||||    
T  12731614 cattaatgacgtgagcgtcggagtactaacatggttgtaggcaccattcgttccacctcgaagactcttcgccgccgtgccggaagcctttaccgtcaca 12731713  T
Q  353 cc 354  Q
    ||    
T  12731714 cc 12731715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 16704522 - 16704424
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcg 269  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||    
T  16704522 cgcctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctacactctctttctcaactccattactgacttcagcg 16704424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 337
Target Start/End: Original strand, 28723745 - 28723911
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    |||||||||||||||||  ||| ||||||||| || || |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||     
T  28723745 cgcctatataaggatgacattgtttcaccctccagatacgattcacttttcacaacattttctacacactctttcttagttccattagtgacttgagcgt 28723844  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaa 337  Q
      || ||| |||||||||     ||| ||||||||||||||||| |||||| |||||| ||||||||    
T  28723845 tggattgccaacgtgcctattagcacatttcgttccaccgcgaagactcattgccaccgtaccggaa 28723911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 89 - 354
Target Start/End: Complemental strand, 25496143 - 25495876
Alignment:
Q  89 cccccgcgcgaggat-atcctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaaca--cgcctatataaggat 185  Q
    |||||| |||||||| |||| |||| |||||| | || | |||||||||| || ||||||| |||||||| |||||| ||||   ||||||||||||| |    
T  25496143 cccccgagcgaggatcatccaacacgtgtcctacaccgttcctaatcacacgccgcataacccggagacggttatgatcaacgtgcgcctatataagggt 25496044  T
Q  186 gaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtg 285  Q
    |||||||||||||| | ||| ||    ||||||||  |||| |||  |||||||||||||||||||  |||||||||||||| | |||||||||||||||    
T  25496043 gaacttgcttcacctttaaggtacacatcacttttttcaactcttcttacacactctttctcagtttgattactgacttgag-gtcagagtgctaacgtg 25495945  T
Q  286 cctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
     |||||| |||||| ||  |||||||||| | ||||| ||  | | ||||||| |||||||||||||||    
T  25495944 tctgcaggcaccttacgccccaccgcgaagaatcatcaccgtcgtgccggaagccgttaccgtcacacc 25495876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 21342260 - 21342397
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    ||||||||||| | | ||| ||||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||       
T  21342260 cctatataagggtaaccttacttcaccctcaatgtatgattcacttttcacaacactttctatacactctttatcagttccattactgacttgagcgttg 21342359  T
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccg 310  Q
     | || ||||||||||||| | ||||||||| ||||||    
T  21342360 tactgttaacgtgcctgcatatacctttcgtcccaccg 21342397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 30607048 - 30606950
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcg 269  Q
    ||||||||||||| ||  ||| ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  30607048 cgcctatataagggtggccttacttcaccctcaaggtataattcacttttcacaacactttctactcactctttctcaattccattactgacttgagcg 30606950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 28715465 - 28715620
Alignment:
Q  177 tataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagt 276  Q
    ||||||| |||  ||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     |   ||||    
T  28715465 tataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttatacacactctttctcagttccattactgact-----gttggagt 28715559  T
Q  277 gctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaa 337  Q
    |||||||||| ||| |||| ||||| || ||||  ||| |||||| ||||| |||||||||    
T  28715560 gctaacgtgcatgcggacaactttcatttcaccttgaagactcattgccacaataccggaa 28715620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 190 - 337
Target Start/End: Original strand, 8122905 - 8123051
Alignment:
Q  190 ttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctg 289  Q
    |||||||||||||||| |||||||||||||||||||| ||||| ||| | | ||| ||| || |||||||||||||||||   |||||||||||||||||    
T  8122905 ttgcttcaccctcaaggtatgattcacttttcacaacgctttcgacatagttttt-tcaatttcattactgacttgagcgttggagtgctaacgtgcctg 8123003  T
Q  290 cagacacctttcgttccaccgcgaaaactcatcgccaccataccggaa 337  Q
    || ||||||||| ||  |||| ||| |||||||| |||| ||||||||    
T  8123004 catacacctttcattttaccgtgaagactcatcgtcaccgtaccggaa 8123051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 233 - 347
Target Start/End: Complemental strand, 21649471 - 21649357
Alignment:
Q  233 tacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccatac 332  Q
    |||||| ||| ||||||||||||||||||||||| ||   | |||||||||||| ||||| ||||||||||||||||||||| |||||||||||||  |     
T  21649471 tacacattctctctcagttccattactgacttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcatcgccaccgcat 21649372  T
Q  333 cggaagtcgttaccg 347  Q
    |||||| ||||||||    
T  21649371 cggaagccgttaccg 21649357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 349
Target Start/End: Complemental strand, 12108596 - 12108361
Alignment:
Q  116 tcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacg--cctatataaggatgaacttgcttcaccctcaagttatgat- 212  Q
    ||||||||| |||||||||||| || ||||||| ||||| |  ||||||||||| ||  ||||||||||| ||||||||||||||||||||| ||   |     
T  12108596 tcctcctccgtccctaatcacaagccgcataacccggaggccgttatgaccaacgcgtgcctatataagggtgaacttgcttcaccctcaaggtacattc 12108497  T
Q  213 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcg 312  Q
    ||| ||| || |||| ||  | |||| |||||||||||||||||||| ||||||||| | ||||| |||| ||| ||||  |||||||| ||||||| ||    
T  12108496 tcattttccagaaca-ttatttcacattctttctcagttccattactaacttgagcgtcggagtggtaacatgcatgcatgcacctttcattccaccacg 12108398  T
Q  313 aaaactcatcgccaccataccggaagtcgttaccgtc 349  Q
    |  |||||||| |  | | |||||||| |||||||||    
T  12108397 aggactcatcgtcgtcgtgccggaagtagttaccgtc 12108361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 330
Target Start/End: Original strand, 13085073 - 13085203
Alignment:
Q  200 ctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctt 299  Q
    |||||| | ||||||||||||||||| |||||||||| | |||||||||||| ||||| |||||||||||   || |||| || |||||||||||| |||    
T  13085073 ctcaaggtttgattcacttttcacaatactttctacatattctttctcagtttcattattgacttgagcgttggaatgcttacatgcctgcagacatctt 13085172  T
Q  300 tcgttccaccgcgaaaactcatcgccaccat 330  Q
    || | ||||| |||| |  ||||||||||||    
T  13085173 tcatcccaccacgaagaaccatcgccaccat 13085203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 7835427 - 7835625
Alignment:
Q  56 cagcttaactgcaccgtgccacacagaagtgcacccccgcgcgaggatatcc-tacacatgtcctcctccatccctaatcacatgctgcataactcggag 154  Q
    ||||| ||||| |||||||||||||  ||  | |||||||||||||||  || | ||| ||||||||||| | ||| |||||| |  ||||||| | |||    
T  7835427 cagctaaactgaaccgtgccacacaagagcacgcccccgcgcgaggatcgccctgcacgtgtcctcctccgttcctgatcacacgtcgcataacccagag 7835526  T
Q  155 acgattatgaccaacacg--cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagtt 251  Q
    ||| |||||  ||||  |  |||||| |||||||||||||||||| | ||||| || |  |||||||||||||||||||||||| ||| ||||||||||    
T  7835527 acggttatggacaacgtgttcctataaaaggatgaacttgcttcatcatcaagatacgtatcacttttcacaacactttctacatactatttctcagtt 7835625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 12252066 - 12251954
Alignment:
Q  213 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcg 312  Q
    ||||||||||||||| ||  |||||||||||||||| || | ||||||||||||| | |||||||||||| ||||||||  ||||||| || | |  |||    
T  12252066 tcacttttcacaacaattcttacacactctttctcattttcgttactgacttgagtgtcagagtgctaacatgcctgcatgcaccttttgtcctattgcg 12251967  T
Q  313 aaaactcatcgcc 325  Q
    || ||||||||||    
T  12251966 aagactcatcgcc 12251954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 347
Target Start/End: Complemental strand, 21652719 - 21652587
Alignment:
Q  214 cacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcga 313  Q
    |||||| || |||||||  |||||| ||| ||| |||||||||||||||||||| |    |||||||| | || ||||| ||| |||||||||||| |||    
T  21652719 cactttccataacacttcttacacattctctcttagttccattactgacttgagagtttaagtgctaatg-gcttgcaggcacgtttcgttccaccacga 21652621  T
Q  314 aaactcatcgccaccataccggaagtcgttaccg 347  Q
    | |||||||||||||  |||||||| ||||||||    
T  21652620 agactcatcgccaccgcaccggaagccgttaccg 21652587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 301
Target Start/End: Original strand, 6109650 - 6109754
Alignment:
Q  197 accctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacac 296  Q
    ||||||||| | |||||||||||||||||||||||||  ||| |  || ||||||| ||||||||||| || |   |||||||||||||||| ||  |||    
T  6109650 accctcaagatgtgattcacttttcacaacactttctttacatttgttttcagttcgattactgacttaagtgttggagtgctaacgtgcctacaagcac 6109749  T
Q  297 ctttc 301  Q
    |||||    
T  6109750 ctttc 6109754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 1475783 - 1475704
Alignment:
Q  257 actgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccgga 336  Q
    |||||||||||||   |||||||| | |||||||||||||||||||| |||||| ||| |||  |||||||| |||||||    
T  1475783 actgacttgagcgttggagtgctagcatgcctgcagacacctttcgtcccaccgtgaagactattcgccaccgtaccgga 1475704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 9781519 - 9781573
Alignment:
Q  213 tcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    ||||||||||||||||||  |||||||||||| |||||| ||||||||| |||||    
T  9781519 tcacttttcacaacacttcttacacactctttttcagttacattactgatttgag 9781573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 13933042 - 13932968
Alignment:
Q  193 cttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    ||||||||  ||| ||||||||||||||||||||| |||| || |||  ||| ||||||| ||||||||||||||    
T  13933042 cttcacccctaaggtatgattcacttttcacaacattttcaacccacattttatcagttcaattactgacttgag 13932968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 35314178 - 35314251
Alignment:
Q  256 tactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaac-tcatcgccacc 328  Q
    ||||||||||||||   ||||||||||||| ||||| ||||| | |||||||||||||| || |||||||||||    
T  35314178 tactgacttgagcgttggagtgctaacgtgtctgcaaacaccctccgttccaccgcgaacacttcatcgccacc 35314251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 20118948 - 20118982
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaag 205  Q
    ||||||||||||| |||||||||||||||||||||    
T  20118948 cgcctatataagggtgaacttgcttcaccctcaag 20118982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 171 - 323
Target Start/End: Complemental strand, 12683905 - 12683753
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    |||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||     
T  12683905 cgcctagataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacactttctacacactctttctcagtttcattactaacttgagcgt 12683806  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcg 323  Q
      |||||||||||||||||||| |||||||||||||||||| || ||||||||    
T  12683805 tggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagactcatcg 12683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 126 - 353
Target Start/End: Complemental strand, 19643869 - 19643640
Alignment:
Q  126 tccctaatcacatgctgcataactcggagacgattatgaccaac--acgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcac 223  Q
    ||||||||| || || ||||||||| |||||| ||||   ||||  |||||||||||||| |||||||| |||||||||||| |||||||||||||||||    
T  19643869 tccctaatctcacgccgcataactcagagacggttatcctcaacgcacgcctatataagggtgaacttgtttcaccctcaaggtatgattcacttttcac 19643770  T
Q  224 aacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcg 323  Q
    || |||||||||||||||||||||||||||||||||||||| |||| | || || |||||| ||||| | |||||| ||||||| | |||| ||||| ||    
T  19643769 aagactttctacacactctttctcagttccattactgacttaagcgtcggattggtaacgtacctgcgggcaccttccgttccatcacgaagactcaacg 19643670  T
Q  324 ccaccataccggaagtcgttaccgtcacac 353  Q
    || || |||||||||||||||  |||||||    
T  19643669 ccgccgtaccggaagtcgttattgtcacac 19643640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 130 - 323
Target Start/End: Original strand, 15742081 - 15742276
Alignment:
Q  130 taatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaaca 227  Q
    |||||||| || ||||||| |||||||| ||||| |||||||||  |||||||||| |||| ||||||||  |||||| ||    |||||||||||||||    
T  15742081 taatcacacgccgcataacccggagacggttatggccaacacgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcacttttcacaaca 15742180  T
Q  228 ctttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcg 323  Q
    |||  |||||||| ||||||||||||||||||||||||||||  |||||||||||||||| |||| ||||||||| |||||| |||| ||||||||    
T  15742181 cttcttacacactttttctcagttccattactgacttgagcgtaagagtgctaacgtgccagcaggcacctttcgctccaccacgaagactcatcg 15742276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 171 - 326
Target Start/End: Complemental strand, 47253397 - 47253242
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| |||  | |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  47253397 cgcctatataagggtgacttagcttcaccctcaaggtatgattcacttttcacaacactttttacacactctttctcagttccattactgacttgagcgt 47253298  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgcca 326  Q
      |||||||||| ||||||||  ||||||| || ||||| |||| |||| ||||||    
T  47253297 tggagtgctaacatgcctgcaagcaccttttgtcccaccccgaagactcgtcgcca 47253242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 172 - 314
Target Start/End: Original strand, 15514533 - 15514675
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||| ||||||||||||||||||||| ||    ||||||| ||||||||||  |||||||||||| ||||||||||||||||||||||||      
T  15514533 gcctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagttccattactgacttgagcgtt 15514632  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgcgaa 314  Q
     |||||||||||||||| ||| |||| ||||||||||||||||    
T  15514633 ggagtgctaacgtgcctacaggcacccttcgttccaccgcgaa 15514675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 305
Target Start/End: Original strand, 14601941 - 14602120
Alignment:
Q  128 cctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaa 225  Q
    |||||||||| || ||||||| |||||||  |||||| |||||| |  |||||||||||||||||||||||||||||||| ||     ||||||||||||    
T  14601941 cctaatcacacgccgcataacccggagacagttatgatcaacacacggctatataaggatgaacttgcttcaccctcaaggtacacaacacttttcacaa 14602040  T
Q  226 cactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttc 305  Q
    |||||  |||||||||| | |||||| |||||||||||||||||   || |||||||||||||||||||| |||||||||    
T  14602041 cacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgttc 14602120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 29157222 - 29157082
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| ||||||| ||||||| ||||| |||| |||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||     
T  29157222 cgcctatataagggtgaacttacttcaccatcaaggtatggttcactttacacaacacttactacacactttttctcagttccattactaacttgagcgt 29157123  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
      |||||| |||||| |||||  ||||||||||||||||||    
T  29157122 tggagtgcaaacgtgtctgcatgcacctttcgttccaccgc 29157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 5518689 - 5518505
Alignment:
Q  144 ataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactc 241  Q
    ||||| |||||||| ||||| |||||||||  |||||||||| ||||||||||||||||||||| || |  ||||||| ||||||||||  |||||| ||    
T  5518689 ataacccggagacggttatgcccaacacgcgcctatataagggtgaacttgcttcaccctcaaggtacgcatcactttccacaacacttcttacacattc 5518590  T
Q  242 tttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgcca 326  Q
    | ||||||||| ||||||||||||||||    |||||||||||| |||||  ||||||||||||||  ||||| ||| |||||||    
T  5518589 tctctcagttcaattactgacttgagcgttgaagtgctaacgtgtctgcactcacctttcgttccattgcgaagacttatcgcca 5518505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 194 - 333
Target Start/End: Complemental strand, 19809798 - 19809660
Alignment:
Q  194 ttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcaga 293  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||   |||||||||| || ||||||     
T  19809798 ttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagtttcattactgacttgagcgttggagtgctaacatgtctgcagg 19809699  T
Q  294 cacctttcgttccaccgcgaaaactcatcgccaccatacc 333  Q
     |||||||| || |||||||| |||||||| |||| ||||    
T  19809698 aacctttcg-tcaaccgcgaagactcatcgtcaccgtacc 19809660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 106 - 292
Target Start/End: Original strand, 16012376 - 16012563
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctca 203  Q
    ||||||| ||| || |||| || ||||||||| || |||||||||||| |||||||| |||||| |||  |||||||||| ||||||||||||||| |||    
T  16012376 cctacacgtgttctgctccgtcactaatcacacgccgcataactcggatacgattattaccaacgcgcgcctatataagggtgaacttgcttcacc-tca 16012474  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcag 292  Q
    || ||    |||||| ||||||  |||  |||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||    
T  16012475 agatacatatcacttctcacaatgcttcttacacactctatctcagttccattactgacttgagcgtcggagtgttaacgtgcctgcag 16012563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 2674549 - 2674681
Alignment:
Q  175 tatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacaga 274  Q
    ||||||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||    |||||||| ||||| ||||||| |||   ||    
T  2674549 tatataagggtgaacttacttcatcctcaaggtatgattcacttttcacaacactttctacacac----tctcagttacattattgacttgtgcgttgga 2674644  T
Q  275 gtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    |||||||| || ||||| ||||||||||  |||||||    
T  2674645 gtgctaacatgactgcatacacctttcgccccaccgc 2674681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 14003073 - 14003184
Alignment:
Q  209 tgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccac 308  Q
    ||||||| |||||| ||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||||||  || |||  ||||||||||||||    
T  14003073 tgattcatttttcataacactttccacaaactctttctcagttccattactgacttgagcgtcatagtgctaacgttgcttcaggaacctttcgttccac 14003172  T
Q  309 cgcgaaaactca 320  Q
    ||| || |||||    
T  14003173 cgcaaagactca 14003184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 128 - 308
Target Start/End: Original strand, 1638244 - 1638425
Alignment:
Q  128 cctaatcacatgctgcataactcggagacgattatg--accaacacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaa 225  Q
    |||||||| |||| ||||||| |||||||| |||||  || | | | ||||||||||| ||||||||||||||||||||| ||     ||||||||  ||    
T  1638244 cctaatcatatgccgcataacccggagacggttatgccacgagcgcacctatataagggtgaacttgcttcaccctcaaggtacacaacacttttcttaa 1638343  T
Q  226 cactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccac 308  Q
    |||||  || ||  ||| ||||||||||||||||||||||| || | ||||||||| ||| ||||| ||||||||||||||||    
T  1638344 cacttcttagactttctctctcagttccattactgacttgatcgtcggagtgctaaagtg-ctgcaaacacctttcgttccac 1638425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 10981949 - 10981835
Alignment:
Q  207 tatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcc 306  Q
    ||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||||| |   |||||| |||||  |||||| |||||||||| ||    
T  10981949 tatgattcacttttccca-cactttttacacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacctttcgtccc 10981851  T
Q  307 accgcgaaaactcatc 322  Q
    || ||||| |||||||    
T  10981850 actgcgaagactcatc 10981835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 13171134 - 13171065
Alignment:
Q  236 acactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttc 305  Q
    |||||||| ||||||||||||||||||||||| |   |||||||||||||||||||  ||||||||||||    
T  13171134 acactcttgctcagttccattactgacttgagagttggagtgctaacgtgcctgcaagcacctttcgttc 13171065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 17110817 - 17110678
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctt-tctcagttccattactgacttgagcg 269  Q
    ||||||| ||||| ||||||||||||||||||||| ||      ||||||| |||||||| ||| | ||| || ||||| ||||||||||||||||| ||    
T  17110817 cgcctatgtaagggtgaacttgcttcaccctcaagatacacaatacttttcgcaacactt-cta-agacttttctctcaattccattactgacttgatcg 17110720  T
Q  270 acagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
     | |||||||||||||| ||||| ||| ||||||||||||||    
T  17110719 tcggagtgctaacgtgcttgcaggcacatttcgttccaccgc 17110678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 333
Target Start/End: Complemental strand, 19818783 - 19818652
Alignment:
Q  201 tcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacaccttt 300  Q
    ||||| ||| |||||||||||||||||||||||||||||||||  |  |||  | ||||||||||||||   |||||||||| |  ||| ||  ||||||    
T  19818783 tcaaggtataattcacttttcacaacactttctacacactcttgattggtttaagtactgacttgagcgttggagtgctaacatatctgtaggaaccttt 19818684  T
Q  301 cgttccaccgcgaaaactcatcgccaccatacc 333  Q
    || ||||||||||| |||||||| |||| ||||    
T  19818683 cg-tccaccgcgaagactcatcgtcaccgtacc 19818652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 307
Target Start/End: Complemental strand, 18463965 - 18463784
Alignment:
Q  128 cctaatcacatgctgcataactcggagacgattatg--accaacacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaa 225  Q
    |||||||| | || ||||||| |||||||| |||||  || | | |||||||||||||||||| ||| |||||||||||| ||     ||||||||||||    
T  18463965 cctaatcatacgccgcataacccggagacggttatgccacaagcgcgcctatataaggatgaaattgtttcaccctcaagatacacaacacttttcacaa 18463866  T
Q  226 cactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcca 307  Q
    ||||   |||||  ||| ||| ||||||  |||||| ||||| |  ||||||||||||||||| |||  ||| |||||||||    
T  18463865 cactccttacaccttctctctaagttcccatactgatttgagtgttagagtgctaacgtgccttcaggaacccttcgttcca 18463784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 334
Target Start/End: Original strand, 26894690 - 26894855
Alignment:
Q  168 acacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    |||||||||||||||  |||  || ||| ||||||||| || |||||||||||| || |||||| || |||||| |||||| ||||   |||||||||||    
T  26894690 acacgcctatataagtgtgacatttcttaaccctcaaggtacgattcacttttctca-cactttttaaacactccttctcatttcctaaactgacttgag 26894788  T
Q  268 cgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccg 334  Q
    || ||||| || ||| ||| ||||  |||||||||| |||||  ||| ||||  ||||||| |||||    
T  26894789 cgtcagagagccaacatgcatgcatgcacctttcgtcccaccatgaagactcgccgccaccgtaccg 26894855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 307
Target Start/End: Complemental strand, 25066264 - 25066128
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| | ||||||||||| ||||||| ||     ||||||||||||||| |  || |   ||| ||| ||||||||||||||||||| ||     
T  25066264 cgcctatataagggtaaacttgcttcaacctcaaggtacacaacacttttcacaacacgtcttagattttctctcttagttccattactgacttgatcgt 25066165  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttcca 307  Q
    |||||||||||||| | ||||  ||||||| ||||||    
T  25066164 cagagtgctaacgtacttgcatgcaccttttgttcca 25066128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 3982002 - 3981919
Alignment:
Q  237 cactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatc 322  Q
    |||||||| ||||||||||||  |||||||| |   |||||||||||||| ||||  ||||||||||||||||| ||| |||||||    
T  3982002 cactctttttcagttccatta--gacttgagtgttggagtgctaacgtgcatgcatgcacctttcgttccaccgtgaagactcatc 3981919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 17746024 - 17746128
Alignment:
Q  70 cgtgccacacagaagtgcacccccgcgcgaggat-atcctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaa 168  Q
    ||||||||| ||||| || ||||| | ||||||| | ||||||| ||||||||| ||| |||||||||| |  ||||||| | |||||  ||||||||||    
T  17746024 cgtgccacatagaagcgcgcccccacacgaggatcaccctacacgtgtcctccttcattcctaatcacacgtcgcataacgcagagacagttatgaccaa 17746123  T
Q  169 cacgc 173  Q
    |||||    
T  17746124 cacgc 17746128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 19564009 - 19563945
Alignment:
Q  244 tctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccac 308  Q
    |||||||| ||| |||||||||| || |  ||||||||||||||||||| |||||||||| ||||    
T  19564009 tctcagtttcataactgacttgatcgtcgcagtgctaacgtgcctgcaggcacctttcgtcccac 19563945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 50151773 - 50151823
Alignment:
Q  169 cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttt 219  Q
    ||||||||||||||| |||  |||||||||||||||| ||||||| |||||    
T  50151773 cacgcctatataagggtgactttgcttcaccctcaaggtatgatttacttt 50151823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 3642977 - 3643025
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttt 219  Q
    |||||| |||||| ||| |||| |||||||||||| |||||||||||||    
T  3642977 cgcctacataagggtgaccttgattcaccctcaagatatgattcacttt 3643025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 106 - 354
Target Start/End: Complemental strand, 379903 - 379653
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaaca--cgcctatataaggatgaacttgcttcaccctca 203  Q
    ||||||| |||||| |||| ||| |||||||| || |||||| || |||| | ||||||||||||  |||||||||| || |||||||||||||||||||    
T  379903 cctacacgtgtcctgctccgtccataatcacacgccgcataattcagagatggttatgaccaacatgcgcctatatacgggtgaacttgcttcaccctca 379804  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    || ||    ||||||||||||||||||  |||||||||||||||||||||||||||||||| || | || |||||||||||||||  |  ||||||||||    
T  379803 aggtacacatcacttttcacaacacttcttacacactctttctcagttccattactgacttcagtgtcaaagtgctaacgtgcctagatgcacctttcgt 379704  T
Q  304 tccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    ||||||||||| |||||||| | || |||||||||  ||||| ||||||||    
T  379703 tccaccgcgaagactcatcgtcgccgtaccggaagctgttacagtcacacc 379653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 353
Target Start/End: Original strand, 120982 - 121164
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| |||| |||||||||||||||| ||    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||      
T  120982 cgcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagttccattactgacttaagcat 121081  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacac 353  Q
    |||||| ||||||||  |  || |||||||| ||||||||| ||   |||| |||||| ||||| ||||||||  ||||||||    
T  121082 cagagtactaacgtgtttctaggcacctttcattccaccgcaaagcttcattgccaccgtaccgaaagtcgttgtcgtcacac 121164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 123 - 354
Target Start/End: Complemental strand, 21416908 - 21416675
Alignment:
Q  123 ccatccctaatcacatgctgcataactcggagacgattatgaccaacacgcc--tatataaggatgaacttgcttcaccctcaagttatgattcactttt 220  Q
    |||||| |||||||| || ||||||| |||||||| ||||| ||||| ||||  |||| |||| ||||||||||||||||| ||| || |||||| ||||    
T  21416908 ccatccataatcacaggccgcataacccggagacggttatgcccaacgcgcccctatacaagggtgaacttgcttcacccttaaggtacgattcattttt 21416809  T
Q  221 cacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactca 320  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| || ||||||||||||  | |||| |||||| |||||    
T  21416808 cacaacactttctacacactctttctcagtttcattactgacttgagcgtcggagtgctaacgagcatgcagacaccttcagatccatcgcgaatactca 21416709  T
Q  321 tcgccaccataccggaagtcgttaccgtcacacc 354  Q
     |||| || ||| | ||| | |||||||||||||    
T  21416708 acgccgccgtactgaaagccattaccgtcacacc 21416675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 114 - 321
Target Start/End: Original strand, 3459397 - 3459604
Alignment:
Q  114 tgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaaca-cgcctatataaggatgaacttgcttcaccctcaagttatgat 212  Q
    ||||||||| | ||| |||||||| || ||||||| | |||||| ||| |||||||  ||||||||||||| ||||||||||||||| ||||| || |||    
T  3459397 tgtcctccttcgtccttaatcacacgccgcataacccagagacggttacgaccaaccgcgcctatataagggtgaacttgcttcacc-tcaaggtacgat 3459495  T
Q  213 tcacttttcac-aacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||  |||||||    
T  3459496 ttacttttcaccaacactttctacacactcttgctcagttccattactgacttgagcgccggagtgctaacgtgcctgcaggcacctttcg-cccaccgc 3459594  T
Q  312 gaaaactcat 321  Q
    ||| ||||||    
T  3459595 gaagactcat 3459604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 169 - 332
Target Start/End: Complemental strand, 30477763 - 30477600
Alignment:
Q  169 cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagc 268  Q
    ||||||||||||||| |||  || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  30477763 cacgcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagtttcgttactgacttgagc 30477664  T
Q  269 gacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccatac 332  Q
    |   |||||||||||||| |||||||| |||||||  |||||||||  ||||| ||||||||||    
T  30477663 gttggagtgctaacgtgcatgcagacatctttcgtctcaccgcgaagtctcattgccaccatac 30477600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 173 - 321
Target Start/End: Complemental strand, 24507575 - 24507427
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    |||||||| || ||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| ||       
T  24507575 cctatatatgggtgaacctacttcaccctcaaggtatgattcacttttcacaacactttctagacactctttctcatttccattattgacttgatcgttg 24507476  T
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcat 321  Q
    |||| ||||||||| ||||||||||||||| |||||||| || ||||||    
T  24507475 gagtactaacgtgcatgcagacacctttcgctccaccgcaaagactcat 24507427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 172 - 319
Target Start/End: Complemental strand, 18323062 - 18322915
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||| ||| ||||||||| ||||||  ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||      
T  18323062 gcctatataagggtgaccttgcttcatcctcaatgtatgattcacttttcacaacattttctacacaatctttctcagttctattactgacttgagcgtt 18322963  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactc 319  Q
     ||||| |||| || |||||  ||||||| ||||||||||||| ||||    
T  18322962 ggagtgttaacatgtctgcatgcaccttttgttccaccgcgaagactc 18322915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 328
Target Start/End: Complemental strand, 13754877 - 13754721
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||  |||  | |||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  13754877 gcctatataagagtgacttagcttcaccctcaaggtaggattcactttacacaacactttctacacactctttctcagtttcattactgacttgagcgat 13754778  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccacc 328  Q
      |||| ||||||||| |||| |||||||||| |||  ||||| |||| || |||||    
T  13754777 gtagtgttaacgtgccagcaggcacctttcgtcccattgcgaagactcttcaccacc 13754721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 24576555 - 24576691
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||| ||||||| ||||||||||||| ||    | ||||||||||||||||  ||||||||| || | |||||||||||||||||||||| |    
T  24576555 gcctatataagggtgaacttccttcaccctcaaggtacacattacttttcacaacacttcttacacactcatttttagttccattactgacttgagcgtc 24576654  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccac 308  Q
    |||||| |||||||||||||| |||||||||||||||    
T  24576655 agagtgttaacgtgcctgcaggcacctttcgttccac 24576691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 327
Target Start/End: Original strand, 26916869 - 26917025
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    |||||||||||||  ||  ||||||||  |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  26916869 cgcctatataagggcgacattgcttcatgctcaaggtatgactcacttttcacaacactttctacacactctctctcagttccattactgacttgagcgt 26916968  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccac 327  Q
     || | ||||||||||||  |  |||||||||||||| | |||| |||| |||||||    
T  26916969 tagtgcgctaacgtgcctaaatgcacctttcgttccatcacgaagactcgtcgccac 26917025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 6928084 - 6928157
Alignment:
Q  194 ttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6928084 ttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 6928157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 332
Target Start/End: Original strand, 17927694 - 17927836
Alignment:
Q  190 ttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctg 289  Q
    |||||||||||| ||| |||||||||| ||||| ||||||||||||| ||||  ||||||||||||||||||||| ||||   |||||||||||||| ||    
T  17927694 ttgcttcacccttaaggtatgattcacctttcataacactttctacatactcaatctcagttccattactgacttaagcgttggagtgctaacgtgcatg 17927793  T
Q  290 cagacacctttcgttccaccgcgaaaactcatcgccaccatac 332  Q
    ||  |||||||||| ||||| | || | |||||||||||||||    
T  17927794 catgcacctttcgtcccaccacaaagagtcatcgccaccatac 17927836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 192 - 332
Target Start/End: Complemental strand, 13765088 - 13764948
Alignment:
Q  192 gcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgca 291  Q
    |||||||| |||||  || ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |    ||||  |||||||||||||    
T  13765088 gcttcaccttcaagacattattcactttacacaacactttctacacactctttctcagtttcattactcacttgaacattggagtcttaacgtgcctgca 13764989  T
Q  292 gacacctttcgttccaccgcgaaaactcatcgccaccatac 332  Q
    ||||||||||||  ||||||||| |||| || |||||||||    
T  13764988 gacacctttcgtcacaccgcgaagactcttcaccaccatac 13764948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 171 - 302
Target Start/End: Original strand, 17698256 - 17698387
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    |||||||||| || ||  ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |     
T  17698256 cgcctatatatgggtggccttgcttcaccctcaaagtataattcacttttcacaacactttctacacactctttctcggttccattactgacttgcatgt 17698355  T
Q  271 cagagtgctaacgtgcctgcagacacctttcg 302  Q
      || ||||||||| || ||||||||||||||    
T  17698356 tggaatgctaacgtacccgcagacacctttcg 17698387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 23269311 - 23269204
Alignment:
Q  226 cactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgcc 325  Q
    ||||||||||||||||||| ||||||||||||||||||| || |   |||||||||| |||||| ||||||||||||||||||||| || ||||||||||    
T  23269311 cactttctacacactctttatcagttccattactgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccaccgcaaagactcatcgcc 23269212  T
Q  326 accatacc 333  Q
    ||| ||||    
T  23269211 accgtacc 23269204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 108 - 325
Target Start/End: Original strand, 17319542 - 17319747
Alignment:
Q  108 tacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgcctatataaggatgaacttgcttcaccctcaagtt 207  Q
    ||||| |||||||||| ||||||||||||| || ||||||| |  || || ||||||||||  ||||||||||| | |||||||||||||||||| ||      
T  17319542 tacacgtgtcctcctcgatccctaatcacacgcggcataac-catag-cggttatgaccaatgcgcctatataaaggtgaacttgcttcaccctcgaggc 17319639  T
Q  208 atgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagag---tgctaacgtgcctgcagacacctttcgtt 304  Q
    |||||||||||||||||||             ||||||||||||||||||||||||||| |  |||||   ||||||| ||||||||  |||||||||||    
T  17319640 atgattcacttttcacaac-------------tctttctcagttccattactgacttgaacatcagagtgctgctaacatgcctgcatgcacctttcgtt 17319726  T
Q  305 ccaccgcgaaaactcatcgcc 325  Q
    ||||| |||| ||||||||||    
T  17319727 ccaccacgaagactcatcgcc 17319747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 15058132 - 15057998
Alignment:
Q  194 ttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcaga 293  Q
    |||||||||||| ||||||| | ||||||| |||||||||||||| | ||||||| || ||||||| ||||| |||    ||||||||||||||||||      
T  15058132 ttcaccctcaaggtatgatttatttttcaccacactttctacacattttttctcaatttcattactaacttgtgcgttgtagtgctaacgtgcctgcatg 15058033  T
Q  294 cacctttcgttccaccgcgaaaactcatcgccacc 328  Q
    |||||||||||||||| | || |||||||| ||||    
T  15058032 cacctttcgttccaccacaaagactcatcgtcacc 15057998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 171 - 292
Target Start/End: Complemental strand, 5859935 - 5859814
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| ||| |||||||||  |||||| || ||||||||| ||| |||||| || ||||||| ||||| |||||||||| |||||||||||     
T  5859935 cgcctatataagggtgaccttgcttcaatctcaaggtacgattcacttctcaaaacactctcaacacactatttcttagttccattattgacttgagcgt 5859836  T
Q  271 cagagtgctaacgtgcctgcag 292  Q
      ||||||||||||| ||||||    
T  5859835 tggagtgctaacgtgtctgcag 5859814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 4565368 - 4565504
Alignment:
Q  175 tatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacaga 274  Q
    ||||||||| ||||||||||||||||||||| ||     |||||||||||||||||  || ||  ||| | |||||| ||||||| ||||||  | | ||    
T  4565368 tatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttatactttctctttcagtttcattactaacttgattgtcgga 4565467  T
Q  275 gtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4565468 gtgctaacatgcctgcagacacctttcgttccaccgc 4565504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 24070938 - 24070879
Alignment:
Q  205 gttatgattcacttttcacaacactttctacacactctttctcagttccattactgactt 264  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  24070938 gttatgattcacttctcacaacactttctacacactctttcttagttccattactgactt 24070879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 322
Target Start/End: Original strand, 11776162 - 11776357
Alignment:
Q  121 ctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcactt 218  Q
    |||||||| |||||||| || |||| |  |||||||| ||||| ||||| |||  |||||||| | |||||||| |||||||||||| ||    ||||||    
T  11776162 ctccatccttaatcacacgccgcattatccggagacggttatgcccaacgcgcacctatataaaggtgaacttgtttcaccctcaaggtacatatcactt 11776261  T
Q  219 ttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaact 318  Q
    ||| |||||||   || |||||||||||||||||||        ||||||| | ||||||||||||||||||| ||| ||||||| ||||||| || |||    
T  11776262 ttcccaacactccttaaacactctttctcagttcca--------ttgagcgtcggagtgctaacgtgcctgcaaacatctttcgtcccaccgcaaatact 11776353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 20055597 - 20055525
Alignment:
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttac 345  Q
    |||| |||||||||||||||||||| |||||||||||||||| | |||||||| || ||||||||| ||||||    
T  20055597 gagtactaacgtgcctgcagacacccttcgttccaccgcgaagattcatcgccgccgtaccggaagccgttac 20055525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 347
Target Start/End: Original strand, 24677603 - 24677734
Alignment:
Q  216 cttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaa 315  Q
    |||| ||||||||||  |||||  ||| ||||||||||| |||||||||||||    |||||||||| ||| ||||| |||| |||||| ||||| |||     
T  24677603 ctttccacaacacttcttacactttctctctcagttccaatactgacttgagcattggagtgctaacatgcttgcagccacccttcgtttcaccgtgaag 24677702  T
Q  316 actcatcgccaccataccggaagtcgttaccg 347  Q
    |||||||||||||  ||| |||| ||||||||    
T  24677703 actcatcgccaccgcaccagaagccgttaccg 24677734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 14666883 - 14666950
Alignment:
Q  244 tctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    ||||| |||||||| |||||||| || | |||||||||||||||||||| ||||||| ||||||||||    
T  14666883 tctcaattccattattgacttgatcgtcggagtgctaacgtgcctgcaggcaccttttgttccaccgc 14666950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 23497134 - 23497194
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacacttt 231  Q
    ||||||||||||| |||  |||||| ||||||||| ||||||||||| |||||||||||||    
T  23497134 cgcctatataagggtgactttgcttaaccctcaaggtatgattcactattcacaacacttt 23497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 1909742 - 1909816
Alignment:
Q  234 acacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccac 308  Q
    |||||||||||||||||| |||||||||||| ||||    | |||||||||| |||||  |||||||||||||||    
T  1909742 acacactctttctcagtttcattactgactttagcgttgaaatgctaacgtgtctgcatgcacctttcgttccac 1909816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 7220586 - 7220553
Alignment:
Q  226 cactttctacacactctttctcagttccattact 259  Q
    ||||||||||||||||||||||||||||||||||    
T  7220586 cactttctacacactctttctcagttccattact 7220553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 23243900 - 23243819
Alignment:
Q  175 tatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccatt 256  Q
    ||||||||  ||||||||||||||||||||| ||    ||||||||||||||||||  |||||||| | | |||||||||||    
T  23243900 tatataagagtgaacttgcttcaccctcaagatacacatcacttttcacaacacttcttacacactatctttcagttccatt 23243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 23269401 - 23269306
Alignment:
Q  126 tccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttt 219  Q
    |||||| ||||| |||||| |||||||||||| ||||   ||||||||  ||||||| || |||  |||||||||||||||| || ||||||||||    
T  23269401 tccctattcacacgctgcaaaactcggagacggttatcctcaacacgcgcctatatatgggtgacattgcttcaccctcaaggtacgattcacttt 23269306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 23497208 - 23497268
Alignment:
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccatacc 333  Q
    |||||||||| ||| |||||| |||||||||||||| || || ||||||||||||| ||||    
T  23497208 gagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccgtacc 23497268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 20055683 - 20055625
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactt 230  Q
    ||||||||||||||||||||||||||||||| ||| ||    ||||||||||||||||||    
T  20055683 cgcctatataaggatgaacttgcttcaccct-aaggtacacatcacttttcacaacactt 20055625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 7220646 - 7220617
Alignment:
Q  207 tatgattcacttttcacaacactttctaca 236  Q
    ||||||||||||||||||||||||||||||    
T  7220646 tatgattcacttttcacaacactttctaca 7220617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 171 - 354
Target Start/End: Complemental strand, 6418 - 6235
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    |||||||||||||||||||||||||||| |||||| || || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  6418 cgcctatataaggatgaacttgcttcacgctcaaggtacgactcacttttcacaacactttctacacactatttctcagttccattactgacttgagctt 6319  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    |  |||||||||||||||||| |||||||| ||||||| ||  | ||||| ||   || ||||| |||||||||||||||||||    
T  6318 cgaagtgctaacgtgcctgcaaacaccttttgttccactgcagagactcaacgttgccgtaccgaaagtcgttaccgtcacacc 6235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 49 - 314
Target Start/End: Complemental strand, 25333982 - 25333712
Alignment:
Q  49 agcacaccagcttaactgcaccgtgccacacagaagtgcacccccgcgcgaggat-atcctacacatgtcctcctccatccctaatcacatgctgcataa 147  Q
    ||||| ||||||| | |||||||||||||||| |||| | ||||||| ||||||| | ||||||| ||||||||||| |||||| ||||| || |||| |    
T  25333982 agcacgccagcttgaatgcaccgtgccacacaaaagttcgcccccgcacgaggatcaccctacacgtgtcctcctccttccctagtcacacgccgcatta 25333883  T
Q  148 ctc--ggagacgattatgaccaa--cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctt 243  Q
    | |  ||||||| |||||| |||  ||||| ||||||||  |||||||||||||| |||||  |||||||||||||| |||||||||||||||||||||     
T  25333882 cccccggagacggttatgagcaatgcacgcttatataagagtgaacttgcttcactctcaaagtatgattcacttttaacaacactttctacacactctc 25333783  T
Q  244 tctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaa 314  Q
    ||| |||| ||||||||||||||||| | |||| ||||  ||||||||   |||||||| |||||||||||    
T  25333782 tcttagttacattactgacttgagcgtcggagtactaatatgcctgcaagtacctttcgctccaccgcgaa 25333712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 175 - 328
Target Start/End: Complemental strand, 22903209 - 22903056
Alignment:
Q  175 tatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacaga 274  Q
    ||||||||| |||  ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  22903209 tatataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgttgaa 22903110  T
Q  275 gtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccacc 328  Q
    |||||||| ||||| |  | |||||||||||||||||||||||||||| |||||    
T  22903109 gtgctaacatgcctacgaaaacctttcgttccaccgcgaaaactcatcaccacc 22903056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 106 - 354
Target Start/End: Complemental strand, 22865948 - 22865698
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaac--acgcctatataaggatgaacttgcttcaccctca 203  Q
    ||||||| |||| | |||| |||||||||||| |  ||||||  |||| ||| ||||| |||||  |||||||||||||| |||||||||||||||||||    
T  22865948 cctacacgtgtcatgctccgtccctaatcacaagtcgcataatccggaaacggttatggccaacgcacgcctatataagggtgaacttgcttcaccctca 22865849  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    || ||    ||||||||||||||| ||  |||||||| |||||||||||||||||| ||||||||| || ||||||||||| ||||||  ||||||||||    
T  22865848 aggtacacatcacttttcacaacatttcttacacactttttctcagttccattactaacttgagcgtcaaagtgctaacgtacctgcatgcacctttcgt 22865749  T
Q  304 tccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    ||||| ||||| ||   |||||||| | ||| ||| |||||||||||||||    
T  22865748 tccactgcgaagacatgtcgccaccgtgccgaaagccgttaccgtcacacc 22865698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 171 - 300
Target Start/End: Original strand, 26994577 - 26994706
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| ||| |||||||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||     
T  26994577 cgcctatataagggtgaccttgcttcacccccaaggtatgattcacttttcacaacaccttctaaacactctttctcaattccattactgacttgagcgt 26994676  T
Q  271 cagagtgctaacgtgcctgcagacaccttt 300  Q
    | ||||||||||||| ||| ||||||||||    
T  26994677 cggagtgctaacgtgtctgaagacaccttt 26994706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 171 - 354
Target Start/End: Complemental strand, 25537525 - 25537342
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| ||||||| ||||||||||||| |||   ||||||||||||||||||  |||||| |||||||||||||||||||   ||||||||     
T  25537525 cgcctatataagggtgaactttcttcaccctcaaggtatacatcacttttcacaacacttcatacacaatctttctcagttccattacaatcttgagcgt 25537426  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
      |||||||||||||| ||||| ||||||||||||||||||||| |||| ||||| || | || |||  |||||||||||||||    
T  25537425 tggagtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcttcgccgccgtgccagaaaccgttaccgtcacacc 25537342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 32418371 - 32418593
Alignment:
Q  89 cccccgcgcgaggat-atcctacacatgtcctcct--ccatccctaatcacatgctgcataactcggagacgattatgaccaac--acgcctatataagg 183  Q
    ||||||||||||||| | ||||||| ||||| |||  ||||||||||||||| || ||||||| |||||||  ||| |   |||  ||| ||||| ||||    
T  32418371 cccccgcgcgaggatcaccctacacgtgtcc-cctaaccatccctaatcacacgccgcataacccggagacagttaagcttaacgcacgtctatacaagg 32418469  T
Q  184 atgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacg 283  Q
     ||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| | ||||||||||| ||||||| | |||    
T  32418470 gtgaacttgcttcatcctcaaggtatgattcactcttcacaacactctctacacactctttctctgttccatcagtgacttgagcgtcagagtgttgacg 32418569  T
Q  284 tgcctgcagacacctttcgttcca 307  Q
    ||||||||| | ||||||||||||    
T  32418570 tgcctgcaggctcctttcgttcca 32418593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 193 - 327
Target Start/End: Original strand, 27083231 - 27083364
Alignment:
Q  193 cttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcag 292  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |   ||||||||||||| ||||||    
T  27083231 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttcacagtttc-ttactgacttgagtgttggagtgctaacgtgtctgcag 27083329  T
Q  293 acacctttcgttccaccgcgaaaactcatcgccac 327  Q
    |||| |||||||| |||||||| |||| |||||||    
T  27083330 acacatttcgttctaccgcgaagactcttcgccac 27083364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 106 - 351
Target Start/End: Original strand, 25828892 - 25829139
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgcct--atataaggatgaacttgcttcaccctca 203  Q
    ||||||| ||||||  |||  ||||||||||| || ||||||| ||||||||  |||| ||||||||| |  ||||| || |||||||| ||||||||||    
T  25828892 cctacacgtgtcctattccgcccctaatcacacgccgcataacccggagacggctatggccaacacgcttttatatacgggtgaacttgtttcaccctca 25828991  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    ||  |    ||||||||||||| ||||  |||||||| ||||||| |||||||| ||||| ||||| |||| |||||||||||||| | |||| ||| ||    
T  25828992 agggacacatcacttttcacaatacttcttacacactttttctcaattccattattgactagagcgtcagattgctaacgtgcctgaatacacattttgt 25829091  T
Q  304 tccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcac 351  Q
    || |||||||| ||| ||||||||| | ||| |||| |||||||||||    
T  25829092 tcaaccgcgaagacttatcgccaccgtgccgaaagtagttaccgtcac 25829139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 171 - 321
Target Start/End: Complemental strand, 20025403 - 20025253
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||| ||||||| ||| || ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||| |||| |||||   ||||     
T  20025403 cgcctgtataagggtgacctagcttcaccctcaaggaatgattcactttacacaacactttctacacactctttctcagtttcattcctgacagtagcgt 20025304  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcat 321  Q
      ||||| |||||||  |||||||||||||||| |||||||||| ||||||    
T  20025303 tggagtgttaacgtgtgtgcagacacctttcgtcccaccgcgaagactcat 20025253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 65 - 309
Target Start/End: Complemental strand, 24546571 - 24546329
Alignment:
Q  65 tgcaccgtgccacacagaagtgcacccccgcgcgaggat-atcctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatg 163  Q
    ||||||||||||||||| || ||||| |||||| ||||| | ||||||| |||| | |||| |||||||||||| || ||||||| |||||||| |||||    
T  24546571 tgcaccgtgccacacaggagcgcacctccgcgcaaggatcaccctacacgtgtcttgctccgtccctaatcacacgccgcataacccggagacggttatg 24546472  T
Q  164 accaa--cacgcctatataaggatgaac-ttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactg 260  Q
     | ||  | ||||||||||||| ||||| |||||||||| ||||| ||    |||| |||||||||||||  || ||||    ||||| |||||||||||    
T  24546471 gctaacgcgcgcctatataagggtgaactttgcttcaccttcaaggtacacatcac-tttcacaacacttcttatacac----tctcaattccattactg 24546377  T
Q  261 acttgagcgacagagtgctaacgtgcctgcagacacctttcgttccacc 309  Q
    |||| ||||   |||| ||||||||||||||||||||||||||||||||    
T  24546376 actttagcg-tggagttctaacgtgcctgcagacacctttcgttccacc 24546329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 31202237 - 31202380
Alignment:
Q  65 tgcaccgtgccacacagaagtgcacccccgcgcgaggat-atcctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatg 163  Q
    ||||||||||||| || ||| || ||||||||||||||| | ||||||| |||| ||||||| ||||||||||| || |||||||   |||||| |||||    
T  31202237 tgcaccgtgccacgcaaaagcgcgcccccgcgcgaggattaccctacacgtgtcttcctccacccctaatcacacgccgcataacctagagacggttatg 31202336  T
Q  164 accaaca--cgcctatataaggatgaacttgcttcaccctcaag 205  Q
    ||||||   ||||||||||||| |||||||||||||||||||||    
T  31202337 accaacgtgcgcctatataagggtgaacttgcttcaccctcaag 31202380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 24647408 - 24647310
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcg 269  Q
    ||||||||||||| ||||||||||||||||| ||| |||   ||||||||||||||||||  |||||||||||| |||||||||||||||| |||||||    
T  24647408 cgcctatataagggtgaacttgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccattactgaattgagcg 24647310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 333
Target Start/End: Complemental strand, 8939010 - 8938868
Alignment:
Q  192 gcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgca 291  Q
    |||||||||||||  ||||||||||||||| || |||||| |||||||||||||||||||||| |||||||| ||||    ||||| |||||||||||||    
T  8939010 gcttcaccctcaatgtatgattcacttttccca-cactttttacacactctttctcagttccaatactgactagagcattggagtgttaacgtgcctgca 8938912  T
Q  292 gacacctttcgttccaccg--cgaaaactcatcgccaccatacc 333  Q
      |||||||||||| ||||  | || ||||||||||||| ||||    
T  8938911 tgcacctttcgttctaccgcacaaagactcatcgccaccgtacc 8938868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 311
Target Start/End: Original strand, 26348018 - 26348190
Alignment:
Q  129 ctaatcacatgctgcataactcggagacgattatgaccaaca--cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaac 226  Q
    ||||||||| |  ||||||| |||||||| |||||   ||||  ||||||||||||| ||||||||||||||||||||| ||            ||||||    
T  26348018 ctaatcacacgtcgcataacccggagacgtttatggaaaacatgcgcctatataagggtgaacttgcttcaccctcaaggta------------cacaac 26348105  T
Q  227 actttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    ||||  |||||  ||| | | |||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  26348106 acttcttacactatctcttttagttccattaatgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 26348190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 31202467 - 31202582
Alignment:
Q  239 ctctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaag 338  Q
    |||| ||||||||||| |||||||||||||| | || ||||||||| |||| || ||| ||  ||||||||||||| |||||||||| || |  | ||||    
T  31202467 ctctctctcagttccaatactgacttgagcgtcggaatgctaacgttcctgtaggcactttctgttccaccgcgaagactcatcgccgccgtgtcagaag 31202566  T
Q  339 tcgttaccgtcacacc 354  Q
    ||||||||||||||||    
T  31202567 tcgttaccgtcacacc 31202582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 336
Target Start/End: Original strand, 227714 - 227814
Alignment:
Q  236 acactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccgg 335  Q
    |||||||||||||||| || |  | |||||||||   ||||||||||||||||||||||||  ||| | ||||| |||| ||||||||||||||||||||    
T  227714 acactctttctcagtttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcatcccaccacgaagactcatcgccaccataccgg 227813  T
Q  336 a 336  Q
    |    
T  227814 a 227814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 326
Target Start/End: Complemental strand, 16621264 - 16621173
Alignment:
Q  235 cacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgcca 326  Q
    |||||||||||||||||||| || || ||||||||    |||| |||||||||| || |||||||||||||||||| ||| |||||||||||    
T  16621264 cacactctttctcagttccaatattggcttgagcgttgaagtgttaacgtgcctacatacacctttcgttccaccgtgaagactcatcgcca 16621173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 19993182 - 19993232
Alignment:
Q  217 ttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  19993182 ttttcacaacactttcaacacgctctttctcagttccattactgacttgag 19993232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 34493610 - 34493542
Alignment:
Q  194 ttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttga 266  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||||||  ||| |||||||||||||||||    
T  34493610 ttcaccctcaaggtatgattcacttttcacaacactttct--acactctt--tcaattccattactgacttga 34493542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 19846125 - 19846053
Alignment:
Q  235 cacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcca 307  Q
    |||||||||||| ||||||| |||||||||||| |  |||||||||| ||| |||||| ||||||||||||||    
T  19846125 cacactctttcttagttccaatactgacttgagtgttagagtgctaatgtgtctgcaggcacctttcgttcca 19846053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 18799827 - 18799760
Alignment:
Q  244 tctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    ||||||||||||||||||||||| || | ||||||||||||| ||||||  | |||||||||||||||    
T  18799827 tctcagttccattactgacttgatcgtcggagtgctaacgtgactgcaggaatctttcgttccaccgc 18799760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 4477233 - 4477153
Alignment:
Q  256 tactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccgga 336  Q
    ||||||||||||||   ||||  |||||||||||| | |||| ||||| ||||||| || ||||||||||||| |||||||    
T  4477233 tactgacttgagcgttggagtattaacgtgcctgcgggcacccttcgtcccaccgcaaagactcatcgccaccgtaccgga 4477153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 26163691 - 26163619
Alignment:
Q  235 cacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcca 307  Q
    |||||||||||| |||| |||| ||||||||||||   ||||||||| |||| ||||  ||||||||||||||    
T  26163691 cacactctttcttagtttcatttctgacttgagcgttggagtgctaatgtgcatgcatgcacctttcgttcca 26163619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 21213363 - 21213329
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaag 205  Q
    ||||||||||||| |||||||||||||||||||||    
T  21213363 cgcctatataagggtgaacttgcttcaccctcaag 21213329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 7449827 - 7449755
Alignment:
Q  256 tactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccacc 328  Q
    ||||||||| ||||  |||||||||||||| ||| |  |||||||||| ||||||| || |||||||| ||||    
T  7449827 tactgacttaagcgttagagtgctaacgtgtctgaatgcacctttcgtcccaccgcaaagactcatcgtcacc 7449755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 25679219 - 25679251
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaag 205  Q
    ||||||||||| |||||||||||||||||||||    
T  25679219 cctatataagggtgaacttgcttcaccctcaag 25679251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 106 - 325
Target Start/End: Complemental strand, 23073 - 22852
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctca 203  Q
    |||||||||||||| |||| ||||||||||||  | |||||||  ||||| | |||| |||||| |||  ||| |||||| |||||||||||||||||||    
T  23073 cctacacatgtcctgctccgtccctaatcacacaccgcataacctggagagggttatcaccaacgcgcacctacataagggtgaacttgcttcaccctca 22974  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    || ||    ||||||||||||||||||  |||||||  |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  22973 aggtacacgtcacttttcacaacacttcttacacacgatttctcagttccattactgacttgagcgtcagagtgctaacgtgcccgcaggcacctttcgt 22874  T
Q  304 tccaccgcgaaaactcatcgcc 325  Q
     |||| ||||| || |||||||    
T  22873 cccactgcgaagacccatcgcc 22852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 174 - 347
Target Start/End: Original strand, 10889 - 11062
Alignment:
Q  174 ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacag 273  Q
    |||||||| | |||||||| |||||||||||| ||    ||||||||||||||||||  |||||||||| | |||||||||||| |||||||||||   |    
T  10889 ctatataaaggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttccattattgacttgagcgttgg 10988  T
Q  274 agtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccg 347  Q
    |||||||||||||||||| |||||||| ||||||||||  | | |||||||| || ||||||||||||||||||    
T  10989 agtgctaacgtgcctgcatacaccttttgttccaccgcagagattcatcgccgccgtaccggaagtcgttaccg 11062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 46)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 68 - 354
Target Start/End: Original strand, 12449448 - 12449737
Alignment:
Q  68 accgtgccacacagaagtgcacccccgcgcgaggat-atcctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgacc 166  Q
    |||| ||||||||  ||||||||| ||||| ||||| | |||| || || ||| ||||  |||||||||||  |||||||||  ||||||  ||||||||    
T  12449448 accgggccacacaagagtgcaccctcgcgcaaggatcaccctagacgtggcctactccgcccctaatcacacactgcataacctggagacagttatgacc 12449547  T
Q  167 aacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgactt 264  Q
    ||| |||  |||||||||| | |||||| |||||||||||| ||    ||||||| ||||||||||  |||||||||||| |||| ||||||||||||||    
T  12449548 aacgcgcgcctatataagggtaaacttgattcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagctccattactgactt 12449647  T
Q  265 gagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||| |||| ||||||| || |  | ||| |||||||||| ||||||||    
T  12449648 gagcgtcagagtgctaacgtgcctacagacacctttcgtcccaccacgaagactcatcaccgcggtgccgaaagtcgttactgtcacacc 12449737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 127 - 353
Target Start/End: Complemental strand, 34064361 - 34064133
Alignment:
Q  127 ccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcaca 224  Q
    |||||||||| ||| ||||||| ||| |||| ||||| ||||| |||  |||||||||| ||||||||||||||||||||| ||    ||||||||||||    
T  34064361 ccctaatcacgtgccgcataacccggtgacggttatggccaactcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcaca 34064262  T
Q  225 acactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgc 324  Q
    ||||||  |||||||||||||| |||| |||||||||||||| || || |||| ||||||||||||| ||||||||||||| |||| ||| ||||||  |    
T  34064261 acacttcttacacactctttcttagtttcattactgacttgaacgtcatagtgttaacgtgcctgcacacacctttcgttctaccgtgaagactcattac 34064162  T
Q  325 caccataccggaagtcgttaccgtcacac 353  Q
    |  ||||||  ||||||||||||||||||    
T  34064161 cgtcataccaaaagtcgttaccgtcacac 34064133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 19305584 - 19305444
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  19305584 cgcctatttaagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactcttactcagttccattactgacttgagcgt 19305485  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
       |||||||||||||||  ||  |||||||||||||||||    
T  19305484 ttaagtgctaacgtgcctctaggaacctttcgttccaccgc 19305444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 171 - 331
Target Start/End: Complemental strand, 22572164 - 22572005
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    |||| |||||| | ||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||||| ||||||     
T  22572164 cgccaatataaaggtgaacttgcttcaccctcaagatatgattcactttacacaacaccttctacacactcttt-tcaattccattactgacatgagcgt 22572066  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccata 331  Q
    || ||||||||||||||||||| ||||||| ||||||| ||||| ||| || |||||||||    
T  22572065 catagtgctaacgtgcctgcagccaccttttgttccacggcgaagactgattgccaccata 22572005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 11087620 - 11087473
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    ||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||| || | ||    
T  11087620 cctatataagggtgaacttgtttcatcctcaaggtatgattcacttttcacaacacaatctacatactctttctcagttacattactgacttaagggtca 11087521  T
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactca 320  Q
     |||||||| ||| ||||||||| |||||||||||||||||| |||||    
T  11087520 aagtgctaatgtgtctgcagacagctttcgttccaccgcgaagactca 11087473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 190 - 336
Target Start/End: Complemental strand, 30681093 - 30680947
Alignment:
Q  190 ttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctg 289  Q
    |||||||| ||||||| ||||||||||||||||||| || |||||||| |||||| |||||| |||||||||||||||||   |||||||||||||  ||    
T  30681093 ttgcttcatcctcaaggtatgattcacttttcacaatacattctacacgctctttatcagtttcattactgacttgagcgttggagtgctaacgtgattg 30680994  T
Q  290 cagacacctttcgttccaccgcgaaaactcatcgccaccataccgga 336  Q
    |||||||||||||| |||||||||| ||||||| ||||| |||||||    
T  30680993 cagacacctttcgtcccaccgcgaagactcatctccaccttaccgga 30680947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 173 - 338
Target Start/End: Complemental strand, 18147424 - 18147259
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    ||||||||||| |||  |||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||       
T  18147424 cctatataagggtgacattgcttcaccctaaaggtatgagtcacttttcacaacactttctacacactctttctcggttccattagtgacttgagcgttg 18147325  T
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaag 338  Q
    ||||| |||||| ||| ||| ||||||||||| ||||| ||| |||||||| || | |||||||||    
T  18147324 gagtgttaacgttcctacaggcacctttcgtttcaccgagaagactcatcgtcatcgtaccggaag 18147259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 172 - 311
Target Start/End: Complemental strand, 20148434 - 20148297
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||     
T  20148434 gcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactctttctcaattccattactaacttgagcgat 20148337  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
     ||||||||||||| |||||  ||| ||||||||||||||    
T  20148336 ggagtgctaacgtgtctgcatgcacttttcgttccaccgc 20148297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 172 - 311
Target Start/End: Original strand, 22184394 - 22184531
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||     
T  22184394 gcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactctttctcaattccattactaacttgagcgat 22184491  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
     ||||||||||||| |||||  ||| ||||||||||||||    
T  22184492 ggagtgctaacgtgtctgcatgcacttttcgttccaccgc 22184531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 128 - 322
Target Start/End: Original strand, 27860874 - 27861070
Alignment:
Q  128 cctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaa 225  Q
    |||||||||| || ||||||| |||||||| ||||| |||||||||  ||||| |||| ||||||||||||||||||||  ||    |||||||||||||    
T  27860874 cctaatcacacgccgcataacccggagacggttatggccaacacgcgcctataaaagggtgaacttgcttcaccctcaaagtacacatcacttttcacaa 27860973  T
Q  226 cactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatc 322  Q
    |||||  ||||| |||| | |||||||||||||||||||||| |  ||||| ||||| ||||||||||||||||| |||||||| |  |||||||||    
T  27860974 cacttcttacactctctctttcagttccattactgacttgagtgttagagtactaacatgcctgcagacaccttttgttccaccacagaaactcatc 27861070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 319
Target Start/End: Original strand, 31295439 - 31295654
Alignment:
Q  106 cctacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacac--gcctatataaggatgaacttgcttcaccctca 203  Q
    ||||||| |||| | |||| | |||||||||| |  ||||||| || ||||| ||||| ||||| |  |||||| ||||| ||||||||||||||||||     
T  31295439 cctacacgtgtcttgctccgttcctaatcacacgaagcataacccgaagacggttatggccaacccccgcctatgtaagggtgaacttgcttcaccctcg 31295538  T
Q  204 agttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgt 303  Q
    || ||    ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||| |  ||||||||| ||||||||| || |||||||    
T  31295539 aggtacatatcacttttcacaacacttcatacacactctttctcagtttcattactgacttgagcgtcgaagtgctaacatgcctgcaggcaactttcgt 31295638  T
Q  304 tccaccgcgaaaactc 319  Q
    |||||| |||| ||||    
T  31295639 tccacctcgaagactc 31295654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 33596981 - 33596841
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||  ||||||||||||| ||||||| ||||||||  |||||||||||||||||||||||| ||||| |||| ||||||||| |||||||     
T  33596981 cgcctatataagagtgaacttgcttcatcctcaaggtatgattccattttcacaacactttctacacactttttcttagtttcattactgagttgagcgt 33596882  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
     |||||| ||| ||||||||||  |||||||||||||||||    
T  33596881 tagagtgttaatgtgcctgcaggtacctttcgttccaccgc 33596841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 193 - 328
Target Start/End: Original strand, 3404855 - 3404990
Alignment:
Q  193 cttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcag 292  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |  |||||| ||| |||||| |||    
T  3404855 cttcaccctcaaggtatgattcatttttcacaacactttctacacactctttctcagttccattactgacttaagtgttagagtgttaatgtgcctacag 3404954  T
Q  293 acacctttcgttccaccgcgaaaactcatcgccacc 328  Q
    |||| ||||||  ||  ||||| ||||||| |||||    
T  3404955 acacatttcgtctcattgcgaagactcatcaccacc 3404990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 130 - 301
Target Start/End: Original strand, 689786 - 689958
Alignment:
Q  130 taatcacatgctgcataactcggagacgattatgaccaaca--cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaaca 227  Q
    |||||||| || ||| ||||||||||||||||||| ||||   ||||||||||||| ||| |||| | || ||||||| || ||||||||||||||||||    
T  689786 taatcacacgccgcaaaactcggagacgattatgatcaacgtgcgcctatataagggtgaccttgat-cagcctcaaggtacgattcacttttcacaaca 689884  T
Q  228 ctttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttc 301  Q
    |||| ||||||| ||||||||||||||||||||||||||||     |||||||| || |||||| |||||||||    
T  689885 ctttatacacacactttctcagttccattactgacttgagcattgcagtgctaatgtacctgcaaacacctttc 689958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 308
Target Start/End: Original strand, 12424241 - 12424422
Alignment:
Q  129 ctaatcacatgctgcataactcggagacgattatg--accaacacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaac 226  Q
    |||||||||||| ||||||| |||||||| |||||  || | | ||||||||||||| ||||||||||||||||| ||| ||     |||||||||||||    
T  12424241 ctaatcacatgccgcataacccggagacggttatgtcacgagcgcgcctatataagggtgaacttgcttcacccttaaggtacacaacacttttcacaac 12424340  T
Q  227 actttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccac 308  Q
    ||||| || ||  ||| |||||||||||||||||||||||  | |  ||||||||||||||||||| |||||||||||||||    
T  12424341 actttttagactttctctctcagttccattactgacttgattgtcgtagtgctaacgtgcctgcaggcacctttcgttccac 12424422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 9291991 - 9292129
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||| | |||  | |||||||||||||| ||||||||||||||| || |||||| |||| ||| ||||||||||||| ||||||||||||||     
T  9291991 cgcctatataaaggtgagttagcttcaccctcaaggtatgattcacttttccca-cactttttacatactatttctcagttccaatactgacttgagcgt 9292089  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccg 310  Q
     || |||||||||||| ||||| |||||||||||||||||    
T  9292090 tagcgtgctaacgtgcttgcaggcacctttcgttccaccg 9292129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 174 - 325
Target Start/End: Original strand, 22497272 - 22497423
Alignment:
Q  174 ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacag 273  Q
    ||||||| || ||||||||||||||||||||| ||     |||||||||||||||||| || || |||| | || ||||||||||||||||||||| | |    
T  22497272 ctatatatgggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactttttatactctctctttctgttccattactgacttgagcgtcgg 22497371  T
Q  274 agtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgcc 325  Q
    |||||||||||| |||||  |||||||||||||| |||||| ||||||||||    
T  22497372 agtgctaacgtgtctgcaagcacctttcgttccatcgcgaagactcatcgcc 22497423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 34187397 - 34187279
Alignment:
Q  192 gcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgca 291  Q
    |||||||||||||| ||  ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |   | ||||||||||| |||||    
T  34187397 gcttcaccctcaaggtacaattcacttt-caccacactttttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgca 34187299  T
Q  292 gacacctttcgttccaccgc 311  Q
    ||||||||||||||||||||    
T  34187298 gacacctttcgttccaccgc 34187279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 14080567 - 14080466
Alignment:
Q  207 tatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcc 306  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||| || |||||||||| ||    
T  14080567 tatgattcacttttcacaacacttactacacactctttctcagtt-cattactaacttgagcgtcagagtgctaatgtgcctgtaggcacctttcgtccc 14080469  T
Q  307 acc 309  Q
    |||    
T  14080468 acc 14080466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 9403290 - 9403173
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    ||||||||||| ||||||||||||||||||||| ||    ||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||||| |     
T  9403290 cctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttctcagttccattattgacttgagcgtcg 9403191  T
Q  273 gagtgctaacgtgcctgc 290  Q
    |||| |||||||||||||    
T  9403190 gagttctaacgtgcctgc 9403173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 16131088 - 16130984
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| | |||||| |||||||||||| |||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||||| ||     
T  16131088 cgcctatataagggtaaacttgtttcaccctcaaggtatgattcacgtttcacaacactttctgtacactctttatcagttccattactgacttgaccgt 16130989  T
Q  271 cagag 275  Q
    |||||    
T  16130988 cagag 16130984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 352
Target Start/End: Original strand, 19277026 - 19277234
Alignment:
Q  152 gagacgattatgaccaa--cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcag 249  Q
    |||||| ||||||||||  | ||||||||||||| ||||||||||||||||||||| ||    ||||||||||||||||||  ||||||||||||||||     
T  19277026 gagacggttatgaccaaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcat 19277125  T
Q  250 ttccattact-------gacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgt 342  Q
    ||||||||||       |||||||||| | |||| ||| | || |||||| ||||||| |||||||||  || |||||||||| || ||||||||  |||    
T  19277126 ttccattactcacgagcgacttgagcgtcggagttctagc-tgtctgcaggcaccttttgttccaccggaaagactcatcgccgccgtaccggaaaccgt 19277224  T
Q  343 taccgtcaca 352  Q
    ||||||||||    
T  19277225 taccgtcaca 19277234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 9277293 - 9277411
Alignment:
Q  192 gcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgca 291  Q
    |||||||||||||| ||||||||||||| | | ||||||| |||| ||||||||||||||||| ||||||||||||||  | |||||||||||| |||||    
T  9277293 gcttcaccctcaaggtatgattcacttt-ctccacactttttacatactctttctcagttccaatactgacttgagcgttatagtgctaacgtgtctgca 9277391  T
Q  292 gacacctttcgttccaccgc 311  Q
    |  |||||||||||||||||    
T  9277392 ggaacctttcgttccaccgc 9277411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 354
Target Start/End: Original strand, 19730564 - 19730744
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    ||||||||||| ||||||||||||||||||||| ||    ||||||| ||| ||||||  ||||||||||||||||||||||||| |||||||||||       
T  19730564 cctatataagggtgaacttgcttcaccctcaaggtacacatcactttacacgacacttcttacacactctttctcagttccattattgacttgagcgttg 19730663  T
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    |||||||||| ||||||||  || ||||  ||||||| |||| ||||| ||||  | | ||| |||||||||||| ||||||    
T  19730664 gagtgctaacatgcctgcatgca-ctttacttccaccacgaagactcaacgccgtcgtgccgaaagtcgttaccgccacacc 19730744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 15480314 - 15480408
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    ||||||||||| |||  | ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  15480314 cctatataagggtgacttagcttcactctcaaggtatgattcacttttcacaacactttctacacactttttctcagtttcattattgacttgag 15480408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 31423808 - 31423894
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccatta 257  Q
    ||||||||||||| || ||||||||||||||||||  ||||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  31423808 cgcctatataagggtgcacttgcttcaccctcaagacatgattcacttctcacaacactttctacatactctttctcagtttcatta 31423894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 172 - 328
Target Start/End: Complemental strand, 16343698 - 16343542
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||  ||||||||||||||  ||||  ||    ||||||| ||||||||||  |||||  ||| |||||||||||||||||||||||| |      
T  16343698 gcctatataagtgtgaacttgcttcacattcaaagtacacatcactttccacaacacttcttacactttctctctcagttccattactgacttgagtgtt 16343599  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccacc 328  Q
     |||||||||||||||||||| |||| |||| ||||| ||||| |||||||||||||    
T  16343598 ggagtgctaacgtgcctgcaggcacccttcgctccactgcgaagactcatcgccacc 16343542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 17380219 - 17380123
Alignment:
Q  169 cacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttg 265  Q
    ||||||||||||||| ||| ||||| ||| ||| ||| || |||||||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  17380219 cacgcctatataagggtgaccttgcgtcaacctgaaggtaagattcacttttcacaacactttattcacactctttctcagttctattactgacttg 17380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 108 - 305
Target Start/End: Complemental strand, 18566842 - 18566643
Alignment:
Q  108 tacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaag 205  Q
    ||||| |||||||  || || ||||||||| || |||||||   ||||||| |||||||||| |||  |||||||  | ||||||||| |||||||||||    
T  18566842 tacacgtgtcctctaccgtcgctaatcacacgccgcataacctagagacgagtatgaccaacccgcgcctatatagaggtgaacttgcctcaccctcaag 18566743  T
Q  206 ttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttc 305  Q
     ||   ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||  ||   |   |||||||||| ||||||||||||||| ||||    
T  18566742 gtagacttcactttttacaacgctttctacacaatctttctcagttccattactgactccagtctcgttgtgctaacgtacctgcagacaccttttgttc 18566643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 319
Target Start/End: Original strand, 19331695 - 19331799
Alignment:
Q  215 acttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaa 314  Q
    ||||| |||||||||||||| || |||||||| ||||||||||||||||| |||| | |||| ||||||| ||||||  |||||||||||||||||||||    
T  19331695 actttacacaacactttctatactctctttcttagttccattactgacttaagcgtcggagtactaacgtacctgcaagcacctttcgttccaccgcgaa 19331794  T
Q  315 aactc 319  Q
     ||||    
T  19331795 gactc 19331799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 171 - 300
Target Start/End: Original strand, 34572965 - 34573094
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| |||  |  ||||||||||||  ||||||||||||||||| |||||||||||||||| ||||| ||||| |||||| |||||||||     
T  34572965 cgcctatataagggtgacttaacttcaccctcaatgtatgattcacttttcaccacactttctacacactttttcttagttctattactaacttgagcgt 34573064  T
Q  271 cagagtgctaacgtgcctgcagacaccttt 300  Q
      ||||  ||| ||| ||||||||||||||    
T  34573065 tggagtattaatgtgtctgcagacaccttt 34573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 266
Target Start/End: Original strand, 4251034 - 4251110
Alignment:
Q  190 ttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttga 266  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||| || ||||||||||||||    
T  4251034 ttgcttcaccctcaagatatgatttacttttcacaacactctctccacactctttctcattttcattactgacttga 4251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 10115659 - 10115753
Alignment:
Q  174 ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagc 268  Q
    |||||||||| |||  | ||||||||||| || ||||||||||||||||||| ||||| ||| | ||||||||||||| ||||||||||||||||    
T  10115659 ctatataaggctgacttagcttcaccctcgaggtatgattcacttttcacaaaactttttactcgctctttctcagtttcattactgacttgagc 10115753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 336
Target Start/End: Complemental strand, 14268551 - 14268390
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccc-tcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    |||||||||||| |||  | ||||||||| ||| | |||||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||| ||||     
T  14268551 gcctatataagggtgacttagcttcacccctcacgatatgattcacttttcaaaacactttctacacactatgtcttagttccattactgacttcagcgt 14268452  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccgga 336  Q
      |||||||||    ||| ||  ||| |||||||| ||||| || |||||| |||||| |||||||    
T  14268451 tggagtgctaa----cctacaagcacatttcgttcgaccgcaaagactcattgccaccgtaccgga 14268390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 2907962 - 2907869
Alignment:
Q  235 cacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccacc 328  Q
    ||||| |||||||| ||||| || ||| |||||||  || ||||||||||| ||||||||||||||||||  ||||||||||||| ||| ||||    
T  2907962 cacaccctttctcaattccaataatgatttgagcgttagcgtgctaacgtgactgcagacacctttcgttttaccgcgaaaactcgtcgacacc 2907869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 323
Target Start/End: Original strand, 12487970 - 12488119
Alignment:
Q  174 ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacag 273  Q
    |||||||||| ||||||||  ||||||||||  ||    |||||||||||||||||   |||||||||| | | ||||| |||| |||||| ||||  ||    
T  12487970 ctatataagggtgaacttgtatcaccctcaatgtacacatcacttttcacaacactacttacacactctattttagttctattattgacttcagcgttag 12488069  T
Q  274 agtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcg 323  Q
    ||||||||||||| ||||  |||| ||||||||||  |||| ||||||||    
T  12488070 agtgctaacgtgcatgcatgcacccttcgttccacaacgaagactcatcg 12488119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 308
Target Start/End: Original strand, 25008398 - 25008498
Alignment:
Q  207 tatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcc 306  Q
    ||||||||||||| | || |||||| |||||||||||||||| ||||||||||||||||||||   ||||| |||||||||  ||  |||||||||| ||    
T  25008398 tatgattcactttaccca-cactttttacacactctttctcaattccattactgacttgagcgttggagtgttaacgtgccgacatgcacctttcgtccc 25008496  T
Q  307 ac 308  Q
    ||    
T  25008497 ac 25008498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 12203631 - 12203683
Alignment:
Q  193 cttcaccctcaagttatgattcacttttcacaacactttctacacactctttc 245  Q
    ||||||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  12203631 cttcaccctcaaagtatgattcacttttcacaacactttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 310
Target Start/End: Original strand, 13823320 - 13823487
Alignment:
Q  142 gcataactcggagacgattatgaccaacacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactc 241  Q
    |||||||||||||||| ||||| | |   ||||||||||| | ||||||||||||||||||||| ||     ||||||| ||||||  |||||   | |     
T  13823320 gcataactcggagacggttatgccaagtgcgcctatataaaggtgaacttgcttcaccctcaaggtacacaacactttttacaaca-attctaaggattt 13823418  T
Q  242 tttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccg 310  Q
    ||||||||||||||||||||||||| ||   ||||||||||  || |||   |||||||||||||||||    
T  13823419 tttctcagttccattactgacttgatcgttggagtgctaactagcttgccagcacctttcgttccaccg 13823487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 23768271 - 23768159
Alignment:
Q  213 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcg 312  Q
    ||||||| ||||||||||  |||||||| | | ||||||| |||||||||||||||    |||||||||  |||||| | ||||| ||||||||||  ||    
T  23768271 tcactttccacaacacttcttacacactatctttcagttcaattactgacttgagcattggagtgctaatatgcctgtaaacacccttcgttccacgccg 23768172  T
Q  313 aaaactcatcgcc 325  Q
    || ||||||||||    
T  23768171 aagactcatcgcc 23768159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 15104346 - 15104396
Alignment:
Q  283 gtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccatacc 333  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||| ||||    
T  15104346 gtgcctgcagacacctttcgttctaccgcgaagactcatccccaccgtacc 15104396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 328
Target Start/End: Complemental strand, 22692191 - 22692066
Alignment:
Q  192 gcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgca 291  Q
    |||||||||||||||||||||||||||||| || ||||||  ||||| ||  | ||| ||||  ||||||||||||||   || ||||||||            
T  22692191 gcttcaccctcaagttatgattcacttttccca-cacttttcacacattccatttcatttcccatactgacttgagcgttggaatgctaacg-------- 22692101  T
Q  292 gacacctttcgttccaccgcgaaaactcatcgccacc 328  Q
      ||||||||||||||||||||| |||||||||||||    
T  22692100 --cacctttcgttccaccgcgaagactcatcgccacc 22692066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 17703702 - 17703840
Alignment:
Q  171 cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcga 270  Q
    ||||||||||||| |||  || ||||||||  ||| || |||||||||||| | | ||||| ||||||||| |||||| ||||  | |||||||||| |     
T  17703702 cgcctatataagggtgagatttcttcacccgtaaggtacgattcacttttctc-atactttttacacactccttctcatttcctatgctgacttgagagt 17703800  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccg 310  Q
    ||||| || ||||||| ||||   ||||||||| ||||||    
T  17703801 cagagagccaacgtgcatgcatgaacctttcgtcccaccg 17703840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 27772537 - 27772584
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttt 219  Q
    |||||||||||| ||| ||||||||||| ||||| |||||||||||||    
T  27772537 gcctatataagggtgaccttgcttcaccttcaaggtatgattcacttt 27772584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 333
Target Start/End: Original strand, 10926886 - 10927027
Alignment:
Q  192 gcttcaccctcaagttatgattcacttttcacaacactttctacacactcttt-ctcagttccattactgacttgagcgacagagtgctaacgtgcctgc 290  Q
    ||||||||| |||| ||| ||||||||||| || |||||| ||| |||||||| |||||||||| |||||| ||| |||     ||||||||||| ||||    
T  10926886 gcttcacccccaagatataattcacttttccca-cactttttacgcactcttttctcagttccaatactgaattgggcgttgaggtgctaacgtgtctgc 10926984  T
Q  291 agacacctttcgttccaccgcgaaaactcatcgccaccatacc 333  Q
    |   |||||||||  |||||| || |||| |||||||| ||||    
T  10926985 atgaacctttcgtctcaccgcaaagactcgtcgccaccgtacc 10927027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 14184529 - 14184561
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaag 205  Q
    ||||||||||| |||||||||||||||||||||    
T  14184529 cctatataagggtgaacttgcttcaccctcaag 14184561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 126 - 285
Target Start/End: Original strand, 15354 - 15515
Alignment:
Q  126 tccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcac 223  Q
    ||||||||||||||  ||||||  |||| ||| ||||||| |||  ||  |||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  15354 tccctaatcacatgtcgcataatccggacacggttatgactaacgtgcacctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcac 15453  T
Q  224 aacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtg 285  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||| | |||||||||||||    
T  15454 aacactttctagatactctttctcagttccattactgactggagcgtcggagtgctaacgtg 15515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 325
Target Start/End: Original strand, 8508 - 8701
Alignment:
Q  129 ctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaac 226  Q
    ||||||| | |||||||||| |||||||| |||||  |||| |||  |||||||||| |||| ||    |||||| ||| ||||||||||||||||||||    
T  8508 ctaatcaaacgctgcataacccggagacggttatgctcaacgcgcgcctatataagggtgaagtt----cacccttaaggtatgattcacttttcacaac 8603  T
Q  227 actttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgcc 325  Q
    |||||||||||||| ||| |||||| ||||||||||||||||| |  |||||||||||| ||||| ||||||||  ||||||||| || ||||| ||||    
T  8604 actttctacacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgtg-ctgcaaacaccttttattccaccgcaaagactcaacgcc 8701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 122 - 354
Target Start/End: Original strand, 6780 - 7014
Alignment:
Q  122 tccatccctaatcacatgctgcataactcggagacgattatgaccaaca--cgcctatataaggatgaacttgcttcaccctcaagttatgattcacttt 219  Q
    |||||||||||||||| || |||||||  ||||||| ||||| |||||   |||||||| |||| |||||||| |||||||||||| ||    |||||||    
T  6780 tccatccctaatcacacgccgcataacctggagacggttatggccaacgtgcgcctatacaagggtgaacttgtttcaccctcaaggtacacatcacttt 6879  T
Q  220 tcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactc 319  Q
    |||||||||||  ||||||||| ||||||||| || |||||||||||||| |||||  ||||||||||| |   || ||||||||||||| |||| ||||    
T  6880 tcacaacacttcttacacactcgttctcagtttcaatactgacttgagcgtcagagacctaacgtgcctaccagcatctttcgttccaccacgaagactc 6979  T
Q  320 atcgccaccataccggaagtcgttaccgtcacacc 354  Q
    |||| | || | ||||||| |||||||||||||||    
T  6980 atcggcgccgtgccggaagccgttaccgtcacacc 7014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 7982 - 7848
Alignment:
Q  194 ttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcaga 293  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||  ||||||||||||||||| ||      
T  7982 ttcacactcaaattatgattcacttttcacaacactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatg 7883  T
Q  294 cacctttcgttccaccgcgaaaactcatcgccacc 328  Q
    |||||||| |||||||| ||| |||||||||||||    
T  7882 cacctttccttccaccgtgaagactcatcgccacc 7848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 95782 - 95926
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||| |||  |||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||      
T  95782 gcctatataagggtgacgttgcttcaccctgaaggtatgattcacttttcacaacactttctacgcactctttctcagttccattactaacttgagcgtt 95881  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaa 316  Q
      |||| ||||||||||||||  |||||| || ||||||||||||    
T  95882 gaagtggtaacgtgcctgcaggaaccttttgtcccaccgcgaaaa 95926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 14040 - 13901
Alignment:
Q  173 cctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgaca 272  Q
    ||||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||        
T  14040 cctatataagggtgatcttgcttcaccctcaaggtatgattcacttctcacaacactttctacacactctttctcagtttcattactgacttgagctttg 13941  T
Q  273 gagtgctaacgtgcctgcagacacctttcgttccaccgcg 312  Q
    |||| ||||||||| | ||  |||||||||| ||||||||    
T  13940 gagtactaacgtgcattcatgcacctttcgtcccaccgcg 13901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 283
Target Start/End: Original strand, 166 - 326
Alignment:
Q  126 tccctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgat-tcacttttca 222  Q
    ||||||||||||  ||||||||| |||||||  ||||||||||| |||  ||| |||||| ||||||||||||||||||||| ||   | ||||||||||    
T  166 tccctaatcacacactgcataacccggagacagttatgaccaacgcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttca 265  T
Q  223 caacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacg 283  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  266 caacacttcttacacactctttctcagttccattactgacttgagcgtcggagtgctaacg 326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 150 - 354
Target Start/End: Complemental strand, 35397 - 35190
Alignment:
Q  150 cggagacgattatgaccaacacg--cctatataaggatgaacttgcttcaccctcaagttatgattcactttt-cacaacactttctacacactctttct 246  Q
    |||||||||||||| |||||  |  ||||||||||| | ||   ||||| |||||||   ||||||||||||| |||||||||||| |||||||||||||    
T  35397 cggagacgattatgcccaacgtgtgcctatataagggtaaagccgcttccccctcaaaggatgattcactttttcacaacactttccacacactctttct 35298  T
Q  247 cagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttacc 346  Q
    ||||||| ||||||||||||| | |||||||||||||||||||||  ||| ||||||| |||  |||| ||||| |||| || ||||||||| |||||||    
T  35297 cagttccgttactgacttgagtgtcagagtgctaacgtgcctgcaagcacatttcgttgcactacgaagactcaacgccgccgtaccggaagccgttacc 35198  T
Q  347 gtcacacc 354  Q
     |||||||    
T  35197 atcacacc 35190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 53316 - 53383
Alignment:
Q  244 tctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    |||||||||||||||||| |||| ||  ||| | |||||||||||| || |||||||| |||||||||    
T  53316 tctcagttccattactgatttgatcgtgagaatactaacgtgcctggaggcacctttcattccaccgc 53383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 305
Target Start/End: Complemental strand, 215437 - 215258
Alignment:
Q  128 cctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaa 225  Q
    |||||||||| || ||||||| |||||||  |||||| |||||| |  |||||||||||||||||||||||||||||||| ||     ||||||||||||    
T  215437 cctaatcacacgccgcataacccggagacagttatgatcaacacacggctatataaggatgaacttgcttcaccctcaaggtacacaacacttttcacaa 215338  T
Q  226 cactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttc 305  Q
    |||||  |||||||||| | |||||| |||||||||||||||||   || |||||||||||||||||||| |||||||||    
T  215337 cacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgttc 215258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 143 - 311
Target Start/End: Original strand, 73743 - 73913
Alignment:
Q  143 cataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacact 240  Q
    ||||||||||||||| ||||  |||||||||  |||||||  | ||||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||    
T  73743 cataactcggagacggttatacccaacacgcgcctatatattggtgaacttgcttcaccctgaaggtatgatttacttttcacaacactttctacgcact 73842  T
Q  241 ctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    |||| |||  ||||||||| | ||||||| |||||||||||| |||||| |  ||||||| ||||||||||    
T  73843 ctttttcaaatccattactaatttgagcgtcagagtgctaacatgcctgaatgcaccttttgttccaccgc 73913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 305
Target Start/End: Complemental strand, 40959 - 40782
Alignment:
Q  130 taatcacatgctgcataactcggagacgattatgaccaac--acgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaaca 227  Q
    ||||||||||| ||||||| |||||||| ||||||||| |  ||||||||| |||| ||||||||||||||||||||| ||    |||||||||| ||||    
T  40959 taatcacatgccgcataacccggagacggttatgaccagcgcacgcctataaaagggtgaacttgcttcaccctcaaggtacacatcacttttcataaca 40860  T
Q  228 ctttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttc 305  Q
    ||| |||||| |||| | |||||||||| |||||||||||||   |||||||||||||||||||  | ||||||||||    
T  40859 cttcctacactctctctttcagttccatcactgacttgagcgttggagtgctaacgtgcctgcatgcgcctttcgttc 40782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 129 - 314
Target Start/End: Original strand, 20424 - 20611
Alignment:
Q  129 ctaatcacatgctgcataactcggagacgattatgaccaacacgc--ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaac 226  Q
    ||||||||| ||| |||||||||||||||  |||||||||| |||  ||||||| || |||| ||  ||||||| |||| ||    |||||||||| |||    
T  20424 ctaatcacacgctacataactcggagacggctatgaccaacgcgcgcctatatatgggtgaatttatttcacccacaaggtacacatcacttttcataac 20523  T
Q  227 actttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaa 314  Q
    | ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||  || |  |||||||||||||||||||||    
T  20524 attttctacacactctttctcagttcctttagtgacttgagcgtcagagtgctaacatgtttgtaagcacctttcgttccaccgcgaa 20611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 172 - 291
Target Start/End: Original strand, 68774 - 68891
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||      
T  68774 gcctatataagggtgaccttgcttctccctcaaggtatgattcacttttcacaacactttct--atactctttctcagttccattactaacttgagcgtt 68871  T
Q  272 agagtgctaacgtgcctgca 291  Q
     ||||||||||||| |||||    
T  68872 ggagtgctaacgtgtctgca 68891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 4396 - 4533
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
    |||||||||||| ||||||||||||||||||||| ||    ||| |||||| |||||||  ||||| |||| | |||||| ||||| |||||||||||      
T  4396 gcctatataagggtgaacttgcttcaccctcaaggtacacatcatttttcataacacttcttacactctctctttcagtttcattagtgacttgagcgtt 4495  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccacc 309  Q
     |||||||||||||| ||||||||||||||||||||||    
T  4496 ggagtgctaacgtgcttgcagacacctttcgttccacc 4533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 322
Target Start/End: Original strand, 10604 - 10840
Alignment:
Q  73 gccacacagaagtgcacccccgcgcgaggatatcc-tacacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatgaccaacac 171  Q
    |||||||| ||  |||||||||| |||||||  || ||||| ||||||||||   ||||||||||| || ||||||| |  ||||| ||||||| ||       
T  10604 gccacacacaatcgcacccccgcacgaggatcaccatacacgtgtcctcctctgcccctaatcacacgcggcataac-catagacggttatgacaaatgg 10702  T
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgac 271  Q
     ||||||||| | |||||||||||||||||| ||  |||||||||||||||||||             ||||||||||||||||||||||||||| || |    
T  10703 acctatataaaggtgaacttgcttcaccctcgaggcatgattcacttttcacaac-------------tctttctcagttccattactgacttgaacgtc 10789  T
Q  272 agagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatc 322  Q
     |||||||||| ||||| |||||||||||| ||||||| |||| |||||||    
T  10790 ggagtgctaacatgcctacagacacctttcattccaccacgaagactcatc 10840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 56 - 353
Target Start/End: Complemental strand, 11750 - 11454
Alignment:
Q  56 cagcttaactgcaccgtgccacacagaagtgcacccccgcgcgaggatatcct-acacatgtcctcctccatccctaatcacatgctgcataactcggag 154  Q
    |||||||  ||||| ||||||||||||||| | ||| |||||||| ||  ||| |||  |||||| |||| |||| ||||||| || ||||||| || ||    
T  11750 cagcttacatgcactgtgccacacagaagtacgccctcgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcataacccgaag 11651  T
Q  155 acgattatgaccaac--acgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttc 252  Q
    ||  ||||||||| |  || | ||||||||| |||||||| |||||||||||| |   || |||||||||||||||||   | |||||||||||||||||    
T  11650 acagttatgaccagcgcacacatatataagggtgaacttggttcaccctcaaggtcacat-cacttttcacaacactt---atacactctttctcagttc 11555  T
Q  253 cattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcaca 352  Q
    ||||| |||  ||||||   |||||||||| ||  || || |||| |||||||||||  ||| |||| ||||| || | || |||| | |||||||||||    
T  11554 cattaatgaggtgagcgttggagtgctaacatggttgtaggcaccattcgttccaccttgaagactcttcgccgccgtgccagaagcctttaccgtcaca 11455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 29286 - 29398
Alignment:
Q  208 atgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttcca 307  Q
    ||||||||||||||||||||||||||||||  |||| || | || |||||||||||||||||   |||||||||| || || ||  ||||||||||||||    
T  29286 atgattcacttttcacaacactttctacac--tcttccttattttcattactgacttgagcgttggagtgctaacatgactccatgcacctttcgttcca 29383  T
Q  308 ccgcgaaaactcatc 322  Q
    ||||||| |||||||    
T  29384 ccgcgaagactcatc 29398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 347
Target Start/End: Original strand, 21592 - 21765
Alignment:
Q  174 ctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacag 273  Q
    |||| ||||| |||| |||||||||||||||| ||    ||||||| ||||||||||  || ||||||| | |||||| || |||||||||||| |   |    
T  21592 ctatgtaagggtgaatttgcttcaccctcaaggtacacatcactttccacaacacttcttaaacactctctttcagtttcaatactgacttgagtgttgg 21691  T
Q  274 agtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccg 347  Q
    |||||||||||||| |||| |||  |||||||||| ||  | ||||||||||  | ||||||||||||||||||    
T  21692 agtgctaacgtgcccgcaggcacacttcgttccactgcagagactcatcgccgtcgtaccggaagtcgttaccg 21765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 251
Target Start/End: Complemental strand, 5267 - 5078
Alignment:
Q  65 tgcaccgtgccacacagaagtgcacccccgcgcgaggatatcct-acacatgtcctcctccatccctaatcacatgctgcataactcggagacgattatg 163  Q
    ||||||||||||||||| ||||| ||| |||||||| ||  ||| |||  |||||| |||| |||| ||||||| || ||||||  || ||||| |||||    
T  5267 tgcaccgtgccacacaggagtgcgccctcgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcataagccgaagacggttatg 5168  T
Q  164 accaac--acgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagtt 251  Q
    | || |  || ||||||||||| ||||||||||||||||||||| |     ||||||||||||||||||  ||||||  |||||||||||    
T  5167 atcagcgcacacctatataagggtgaacttgcttcaccctcaaggttcacgtcacttttcacaacacttcttacacaacctttctcagtt 5078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 5037 - 4977
Alignment:
Q  294 cacctttcgttccaccgcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    |||||||||||||||| |||| |||| |||||||| | ||||||| | |||| ||||||||    
T  5037 cacctttcgttccacctcgaagactcttcgccaccgtgccggaagcctttactgtcacacc 4977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 311
Target Start/End: Complemental strand, 42367 - 42229
Alignment:
Q  172 gcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctt-tctcagttccattactgacttgagcga 270  Q
    |||||||||||| ||||||||||||||||||||| ||     |||||||||||||||||  || | ||| || | |||||||||||| |||||||| ||     
T  42367 gcctatataagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactta-ta-atacttttctatcagttccattattgacttgatcgt 42270  T
Q  271 cagagtgctaacgtgcctgcagacacctttcgttccaccgc 311  Q
    |  |||||||| |||||||||| ||||||||||| ||||||    
T  42269 cgaagtgctaatgtgcctgcagccacctttcgtttcaccgc 42229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 309
Target Start/End: Original strand, 69194 - 69333
Alignment:
Q  168 acacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    |||||||||||||||| |||  | |||||| || || | ||||||||| ||||| || ||||||  ||||| ||  ||||| ||||   |||||||||||    
T  69194 acacgcctatataagggtgacatagcttcagcc-cagggtatgattcaattttccca-cacttttcacacattccatctcatttcctacactgacttgag 69291  T
Q  268 cgacagagtgctaacgtgcctgcagacacctttcgttccacc 309  Q
    ||   |||||||||||||||||||| ||||||| ||||||||    
T  69292 cgttggagtgctaacgtgcctgcaggcaccttttgttccacc 69333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 10246 - 10346
Alignment:
Q  213 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccaccgcg 312  Q
    |||||||||||| ||||||||| ||| |||||| ||| | | ||| | |||| ||||   ||||||||| |||||| ||| |||||||||||||| ||||    
T  10246 tcacttttcacaccactttctaaacaatctttcgcagcttccttattcacttaagcgttggagtgctaatgtgcctacaggcacctttcgttccatcgcg 10345  T
Q  313 a 313  Q
    |    
T  10346 a 10346  T

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Target: scaffold0259 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 24450 - 24406
Alignment:
Q  310 gcgaaaactcatcgccaccataccggaagtcgttaccgtcacacc 354  Q
    ||||| |||||||||| |||||||||||| |||||||||||||||    
T  24450 gcgaagactcatcgccgccataccggaagccgttaccgtcacacc 24406  T

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Target: scaffold0034 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 336
Target Start/End: Original strand, 18439 - 18606
Alignment:
Q  168 acacgcctatataaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgag 267  Q
    |||| ||||||||||| |||  | |||||| ||  ||| ||||||||| ||||  | ||||||| ||||||||| |||| | | ||  ||||||||||||    
T  18439 acacacctatataagggtgacttagcttcaacccgaaggtatgattcatttttt-ctacactttgtacacactccttcttattccctatactgacttgag 18537  T
Q  268 cgacagagtgctaacgtgcctgcagacacctttcgttccaccgcgaaaactcatcgccaccataccgga 336  Q
     |   ||||||||| ||| ||||||  || ||||||| ||||| ||| ||||||||||||| |||||||    
T  18538 tgttggagtgctaaagtgtctgcaggaacatttcgtttcaccgtgaagactcatcgccaccgtaccgga 18606  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 311
Target Start/End: Original strand, 31835 - 31933
Alignment:
Q  210 gattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgacagagtgctaacgtgcctgcagacacctttcgttccacc 309  Q
    ||||||| || |||||||||||||||||| ||||||||| ||   |||||||||| |||  | ||  ||||||| ||||||| ||| |||| ||||||||    
T  31835 gattcacattacacaacactttctacacaatctttctcaatt---ttactgacttaagcatcggatagctaacgcgcctgcaaacatcttttgttccacc 31931  T

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