View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17369_low_4 (Length: 303)
Name: NF17369_low_4
Description: NF17369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17369_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 950685 - 950405
Alignment:
| Q |
18 |
gctgcaggtagaaaaattcacttacattttttaaattattttcttccctattctgcatatgcgggagctttagtgtaccagattgtccannnnnnnnatc |
117 |
Q |
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| T |
950685 |
gctgcaggtagaaaaattcacttacattttttaaattatcttcttcccgactctgcatatgcaggagctttagtgcaccgggttgtccattttttt-atc |
950587 |
T |
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| Q |
118 |
tccttacgcatctaattatcacatattttaataaaaaagttaacgttaaagatgaatttgatttgatgtctacaggaaatctaggaaatttgcccttgat |
217 |
Q |
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| T |
950586 |
tccttacacatctaattatcacatattttaaaaaaaaagttaatgttaaagatgaatttgatttgatgtctacaggaaatctaggaaatttgcccttgat |
950487 |
T |
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| Q |
218 |
tattgtcccagctgtatgtaaacaaacaggcaacccttttggagatgcagatatttgtcatagaaatggacttgcctatgct |
299 |
Q |
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| T |
950486 |
tattgtcccagctgtatgtaaacaaacaggcaacccttttggagatgcagatatttgtcatagaaatggacttgcttatgct |
950405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 186 - 299
Target Start/End: Original strand, 1101249 - 1101362
Alignment:
| Q |
186 |
tctacaggaaatctaggaaatttgcccttgattattgtcccagctgtatgtaaacaaacaggcaacccttttggagatgcagatatttgtcatagaaatg |
285 |
Q |
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| T |
1101249 |
tctacacgaaatttaggaaatttgcccttgattattgccccagctgtttgtaaataaagaggcaacccttttggagatgcggatatttgtcgtagaaata |
1101348 |
T |
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| Q |
286 |
gacttgcctatgct |
299 |
Q |
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| T |
1101349 |
gacttgcttatgct |
1101362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 1101145 - 1101183
Alignment:
| Q |
18 |
gctgcaggtagaaaaattcacttacattttttaaattat |
56 |
Q |
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| T |
1101145 |
gctgcaggtagaaaaattcacttacattttttaaattat |
1101183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 30826135 - 30826167
Alignment:
| Q |
73 |
catatgcgggagctttagtgtaccagattgtcc |
105 |
Q |
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| T |
30826135 |
catatgcgggagctttagtgcaccagattgtcc |
30826167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 31525803 - 31525835
Alignment:
| Q |
70 |
ctgcatatgcgggagctttagtgtaccagattg |
102 |
Q |
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| T |
31525803 |
ctgcatatgcgggagctttagtgtaccggattg |
31525835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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