View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17370_high_1 (Length: 546)
Name: NF17370_high_1
Description: NF17370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17370_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 275 - 511
Target Start/End: Original strand, 9733636 - 9733872
Alignment:
| Q |
275 |
aatgaaaatcaaagatcacttttttgtttaactcatttgatttcacttgttgaagctgcaaaaccaaaaccaactttttgaagagttgtttttcacttcc |
374 |
Q |
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| T |
9733636 |
aatgaaaatcaaagatcacttttttgtttaactcatttgatttcacttgttgaagctgcaaaaccaaaaccaactttttgaagagttgtttttctcttcc |
9733735 |
T |
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| Q |
375 |
ttcctttaggtgatgtcgttgtctttgattgtttctcccaaaagaacctgaacgaatccacgttaccaacttgccaacgttgttgcttttttctgctctt |
474 |
Q |
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| T |
9733736 |
ttcctttaggtgatgtctttgtctttgattgtttctcccaaaagaacctgaacgaatccacgttaccaacttgccaacgttgttgcttttttctgctctt |
9733835 |
T |
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| Q |
475 |
gtttcataataatgttgcagttcttcacagtgctgtt |
511 |
Q |
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| T |
9733836 |
gtttcataataatgttgcagttcttcacagtgctgtt |
9733872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 38 - 177
Target Start/End: Original strand, 9733392 - 9733531
Alignment:
| Q |
38 |
ctccttgaaagtagccactaatagattaacccatcaataactcatgagagagaaaacatgaaccagaaatgatgagagttaaatgcatgtttttggtttt |
137 |
Q |
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| T |
9733392 |
ctccttgaaagtagccactaatagattaacccatcaataactcatgagagagaaaacatgaaccagaaatgatgagagttaaatgcatgtttttggtttt |
9733491 |
T |
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| Q |
138 |
tcagttacacacataaaaataaggtagtactaacttcatg |
177 |
Q |
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| T |
9733492 |
tcagttacacacataaaaataaggtagtactaacttcatg |
9733531 |
T |
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