View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17370_low_2 (Length: 497)
Name: NF17370_low_2
Description: NF17370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17370_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Original strand, 37604263 - 37604733
Alignment:
| Q |
19 |
gctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccgatacctgctgttatcgtatccc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37604263 |
gctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccgatacctgctgttatcgtatccc |
37604362 |
T |
|
| Q |
119 |
ataacccagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctcacagcaggggcagtagtccga |
218 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37604363 |
ataacctagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctcacagaaggggcagtagtccga |
37604462 |
T |
|
| Q |
219 |
agaaggaannnnnnnttccttgaagtctcatatatgcgaagggagtacacccctcaacaaactccatnnnnnnnctttgatccgttgaggtatgtgcaga |
318 |
Q |
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|||||| | ||||||||||||| |||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
37604463 |
agaagggacccccc-ttccttgaagtcttatatatgcgaagggagaacacccctcaacaacctccataaaaaaactttgatccgttgaggtatgtgcaga |
37604561 |
T |
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| Q |
319 |
ttccacattctcatccaatctcccggcattctatactccacattatcaatgagagtttccatatcatacatgtatgcagacttcactgtataatgccctt |
418 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37604562 |
ttccacattctcgtccaatctcccggcattctatactccacattatgaatgagagtttccatatcatacatgtatgcagacttcgctgtataatgccctt |
37604661 |
T |
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| Q |
419 |
tgttaatgaatttccatattaacttatctgctccgtctgaattggttaatgctaagttgcggatttcttctc |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37604662 |
tgttaatgaatttccatattaacttatctgctccgtctgaattggttaatgctaagttgcggatttcttctc |
37604733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 8178651 - 8178980
Alignment:
| Q |
19 |
gctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccgatacctgctgttatcgtatccc |
118 |
Q |
| |
|
|||||||||||||| || | |||| |||||||||| |||| || ||| |||||||| |||||||| ||||| | |||||||||||| ||| ||||| |
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| T |
8178651 |
gctatgtccctgcacaaatgattttgcagcctgcaaaaaacagtaaataaatgtgcagccagtcccgtggcggcatcgatacctgctgctattacatccc |
8178750 |
T |
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| Q |
119 |
ataacccagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctcacagcaggggcagtagtccga |
218 |
Q |
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||| ||||||||||||||| || |||||| | || |||||||||| |||| |||||||||||||||||||||||||||||| ||||||| | ||||| |
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| T |
8178751 |
atagcccagcttcaatccatacttgtttcgctgctacacatccgatgaaaacgtgccaatcattctcataattggtctcacaatgggggcagcaatccga |
8178850 |
T |
|
| Q |
219 |
agaaggaannnnnnnttccttgaagtctcatatatgcgaagggagtacacccctcaacaaactccatnnnnnnnctttgatccgttgaggtatgtgcaga |
318 |
Q |
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| |||| | | ||||||||||||| ||| ||| || |||||||| | || |||||| ||||||||| ||||||||| || ||| |
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| T |
8178851 |
acaagggaccccctat--cttgaagtctcattc--gcgtaggaagaacacccctaagcaccctccataagaaaactttgatcctttgaggtatatgaaga |
8178946 |
T |
|
| Q |
319 |
ttccacattctcatccaatctcccggcattctat |
352 |
Q |
| |
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|||||||||||||||||||| |||| || ||||| |
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| T |
8178947 |
ttccacattctcatccaatcacccgacactctat |
8178980 |
T |
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