View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17371_high_5 (Length: 237)
Name: NF17371_high_5
Description: NF17371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17371_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 18010900 - 18011065
Alignment:
| Q |
57 |
ttacaaacccaattgcatgatattgtttatgctttttgtggtcccttctgcttgattattcattattggttgaagaaagtgatgagttgggtgacgtcac |
156 |
Q |
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| T |
18010900 |
ttacaaacccaattgcatgatattgtttatgctttttgtggtcccttctgcttgattattcattattggttgaagaaagtgatgagttgggtgacgtcac |
18010999 |
T |
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| Q |
157 |
atccgacaattgctttatatctagtccttctctcatgctgaaaatgatgatgatataagtatatgt |
222 |
Q |
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| T |
18011000 |
atccgacaattgctttatatctagtccttctctcatgctgaaaatgatgatgatataagtatatgt |
18011065 |
T |
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Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 3068419 - 3068254
Alignment:
| Q |
57 |
ttacaaacccaattgcatgatattgtttatgctttttgtggtcccttctgcttgattattcattattggttgaagaaagtgatgagttgggtgacgtcac |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3068419 |
ttacaaacccaattgcatgatattgtttatgctttttgtggtcccttctgcttgattattcattattggttgaagaaagtgatgagttgggtgacgtcac |
3068320 |
T |
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| Q |
157 |
atccgacaattgctttatatctagtccttctctcatgctgaaaatgatgatgatataagtatatgt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3068319 |
atccgacaattgctttatatctagtccttctctcatgctgaaaatgatgatgatataagtatatgt |
3068254 |
T |
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