View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17371_low_1 (Length: 716)
Name: NF17371_low_1
Description: NF17371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17371_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 16823512 - 16824105
Alignment:
| Q |
1 |
ccattacggatcctaaatctgcttttacagtcccccactttattctccgtcatttttggtttatctgaatccctcatcttttcttgttttgcttgagggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16823512 |
ccattacggatcctaaatctgcttttacagtccccccctttattctctgtcatttttggtttatctgaatccctcatcttttcttgttttgcttgagggg |
16823611 |
T |
|
| Q |
101 |
aagaaactcctccaacacctaaacctttgacatgtttctgctttccttcatcagaatcaccaacattcacat------------aaactttagcatcatc |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16823612 |
aagaaactcctccaacacctaaacctttgacatgtttctgttttccttcatcagaatcaccaacattcacattcacattctcataaactttagcatcatc |
16823711 |
T |
|
| Q |
189 |
tttggattttgctttggcattggcattatttgactcacccttgtgaaccttagaatgaacaaaacttataggttgatcagcaacaaattgaaaatcatat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16823712 |
tttggattttgctttggcattggcattatttgactcacccttgtgaaccttagaatgaacaaaacttataggttgatcagcaacaaattgaaaatcatat |
16823811 |
T |
|
| Q |
289 |
tcattactgacattttgcatttttatgcctacactctttgattcacgtttcttcgattctccattccctttggaagaagaacaacccttcactagatcaa |
388 |
Q |
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| T |
16823812 |
ttattactgacattttgcatttttatgcctacactctttgattcacgtttcttcgattctccattccctttggaagaagaacaacccttcactggatcaa |
16823911 |
T |
|
| Q |
389 |
aataatcctttttctcaaaggtcattaaattggaatgatctgcatgttctgatgcatcattgcaaacagaagaaggactattttcaatgtttacctccac |
488 |
Q |
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| T |
16823912 |
aataatcctttttctcaaaggttattaaattggaatgatctgcatgttctgatacatcattgcaaacagaagaaggactattttcaatgtttacctccac |
16824011 |
T |
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| Q |
489 |
attattcgtctcagaaattacacatttttgatccttcacctctctcaccatctccagtaacccattggaaaattcttcccaaatcttactcaaa |
582 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16824012 |
attattcgtctcagaaattacacatttttgatcctccacctctctcaccatctccagtaacccattggaaaattcttcccaaatcttactcaaa |
16824105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 623 - 706
Target Start/End: Original strand, 16824161 - 16824244
Alignment:
| Q |
623 |
catcaacatcaacatcaacataagaggattcactgtgtttatcgttcgcctctctcgctaactcctccaccacattgaagtatt |
706 |
Q |
| |
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| T |
16824161 |
catcaacatcaacatcaacataagaggattcactgtgtttattgttcgcctctctcgctaactcctccatcacattgaagtatt |
16824244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 329 - 517
Target Start/End: Complemental strand, 16836128 - 16835942
Alignment:
| Q |
329 |
attcacgtttcttcgattctccattccctttggaagaagaacaacccttcactagatcaaaataatcctttttctcaaaggtcattaaattggaatgatc |
428 |
Q |
| |
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||||| ||||||| ||| ||||||||| |||||||||||||| | ||||| | |||||||||||||| ||||||||||||| |||||| | ||||||| |
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| T |
16836128 |
attcaagtttctttgatactccattccggttggaagaagaacagctcttcattggatcaaaataatcccttttctcaaaggttattaaactataatgatc |
16836029 |
T |
|
| Q |
429 |
tgcatgtt-ctgatgcatcattgcaaacagaagaaggactattttcaatgtttacctccacattattcgtctcagaaattacacattttt |
517 |
Q |
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| T |
16836028 |
tgaatgttcccgattcatcattgcaaacagaaga---actatattcaatgttaacctccttattattcctctcagaaattccactttttt |
16835942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 425 - 517
Target Start/End: Original strand, 16835507 - 16835599
Alignment:
| Q |
425 |
gatctgcatgttctgatgcatcattgcaaacagaagaaggactattttcaatgtttacctccacattattcgtctcagaaattacacattttt |
517 |
Q |
| |
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||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||| |||| |||||||| |||||||||| ||| ||||| |
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| T |
16835507 |
gatctgcatgttctgatacatcattgcaaacagatgaaagattattttcaatgtttatctcctcattattccactcagaaattccactttttt |
16835599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 16967762 - 16967857
Alignment:
| Q |
38 |
ctttattctccgtcatttttggtttatctgaatccctcatcttttcttgttttgcttgaggggaagaaactcctccaacacctaaacctttgacat |
133 |
Q |
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| T |
16967762 |
ctttattctccgtcattttctctttatttgattccttcatctcttcttgcttcgtttgaaccgatgaaactccaccaacacctaaacctttgacat |
16967857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 16976637 - 16976770
Alignment:
| Q |
38 |
ctttattctccgtcatttttggtttatctgaatccctcatcttttcttgttttgcttgaggggaagaaactcctccaacacctaaacctttgacatgttt |
137 |
Q |
| |
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|||| |||||| | ||||| |||| ||||| ||| ||||||||||||| |||| ||| | || ||||||||||||||||||||||| ||||| ||| |
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| T |
16976637 |
ctttgttctccattattttctgtttctctgattccttcatcttttcttgctttgtttgggccgataaaactcctccaacacctaaacctgcgacatattt |
16976736 |
T |
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| Q |
138 |
ctgctttccttcatcagaatcaccaacattcaca |
171 |
Q |
| |
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| T |
16976737 |
tttctttcccttatcaaagtcagcaacattcaca |
16976770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 16991918 - 16991987
Alignment:
| Q |
59 |
gtttatctgaatccctcatcttttcttgttttgcttgaggggaagaaactcctccaacacctaaaccttt |
128 |
Q |
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| T |
16991918 |
gtttatctgattccttcatcttttcttgctttatttgaaatgaagaaactcctccaacatctaagccttt |
16991987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 30640036 - 30639922
Alignment:
| Q |
54 |
ttttggtttatctgaatccctcatcttttcttgttttgcttgaggggaagaaactcctccaacacctaaacctttgacatgtttctgctttccttcatca |
153 |
Q |
| |
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||||||||| | ||||||| |||| |||| ||||||| ||| |||| |||||||||||||||| |||||||||| |||||| || ||||||| |||| |
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| T |
30640036 |
ttttggtttgtatgaatcc-tcatattttattgttttacttcagggaaagaaactcctccaacggttaaacctttgtcatgttcatgttttcctttatca |
30639938 |
T |
|
| Q |
154 |
gaatcaccaacattca |
169 |
Q |
| |
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| T |
30639937 |
gagccaccaacattca |
30639922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 353
Target Start/End: Complemental strand, 30639855 - 30639743
Alignment:
| Q |
243 |
atgaacaaaacttataggttgatcagcaacaaattgaaaatcatattcattactgacattttgcatttttat--gcctacactctttgattcacgtttct |
340 |
Q |
| |
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|||| |||||||| ||| |||||||||| || || || ||||| ||||| ||||||||| |||| ||||| | ||| ||||||||||||| |||||| |
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| T |
30639855 |
atgaccaaaacttttagaatgatcagcaataacttaaacatcatcttcatcgctgacatttcgcatgtttatatgtctatactctttgattcatgtttct |
30639756 |
T |
|
| Q |
341 |
tcgattctccatt |
353 |
Q |
| |
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|| || ||||||| |
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| T |
30639755 |
tctatgctccatt |
30639743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 543
Target Start/End: Complemental strand, 35263085 - 35263000
Alignment:
| Q |
458 |
aagaaggactattttcaatgtttacctccacattattcgtctcagaaattacacatttttgatccttcacctctctcaccatctcc |
543 |
Q |
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|||| |||||||| |||| ||||| | | |||||||| ||||||||||| ||| |||| ||||||| ||||||||||||||||| |
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| T |
35263085 |
aagatggactattctcaacatttactttctcattattcctctcagaaattccactctttttatccttcccctctctcaccatctcc |
35263000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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