View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17371_low_11 (Length: 228)
Name: NF17371_low_11
Description: NF17371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17371_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 11004883 - 11004690
Alignment:
| Q |
17 |
actttggcccttactatttctctgcttaaaacaagaaataaaacttttagatcataagataagataa----catacaagttaagtcaccactgatcctaa |
112 |
Q |
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| T |
11004883 |
actttggcccttactatttctctgtttaaaacaagaaataaaacttttagatcataaggtaagataagatacatacaagttaagtcaccactgatcctaa |
11004784 |
T |
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| Q |
113 |
ttgtaggaaaattttaacacagctttcagcatagtttgttgatgaaatggtatcacagcgcttttggcatagtttgttcatgtaatggtatcacag |
208 |
Q |
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| T |
11004783 |
ttgtaggaaaattttaacacagctttcagcatagtttgttgatgaaatggtatcaca--gcttttggcatagtttgttcatgaaatggtatcacag |
11004690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 11014289 - 11014223
Alignment:
| Q |
140 |
agcatagtttgttgatgaaatggtatcacagcgcttttggcatagtttgttcatgtaatggtatcacag |
208 |
Q |
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| T |
11014289 |
agcatagtttgttgatgaaatggtatcacagc--ttttggcatagtttgttcatgaaatggtatcacag |
11014223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 11023558 - 11023493
Alignment:
| Q |
141 |
gcatagtttgttgatgaaatggtatcacagcgcttttggcatagtttgttcatgtaatggtatcacag |
208 |
Q |
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| T |
11023558 |
gcatagtttgttgatgaaatggtatcaca--gcttttggcatagttcgttgatgaaatggtatcacag |
11023493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 11014263 - 11014223
Alignment:
| Q |
130 |
cacagctttcagcatagtttgttgatgaaatggtatcacag |
170 |
Q |
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| T |
11014263 |
cacagcttttggcatagtttgttcatgaaatggtatcacag |
11014223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 11023533 - 11023493
Alignment:
| Q |
130 |
cacagctttcagcatagtttgttgatgaaatggtatcacag |
170 |
Q |
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| T |
11023533 |
cacagcttttggcatagttcgttgatgaaatggtatcacag |
11023493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 11023564 - 11023528
Alignment:
| Q |
173 |
cttttggcatagtttgttcatgtaatggtatcacagc |
209 |
Q |
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| T |
11023564 |
cttttggcatagtttgttgatgaaatggtatcacagc |
11023528 |
T |
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