View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17371_low_12 (Length: 223)
Name: NF17371_low_12
Description: NF17371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17371_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 15265663 - 15265465
Alignment:
| Q |
13 |
attatactgaaatagggttttatgatatattaagaaaggctttaaggactacccttagtagcataattgatagaagaggaaataaaggtaatgaaattaa |
112 |
Q |
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| T |
15265663 |
attacactgaaatagggttttatgatgtattaagaaaggctttaaggactacccttaatagcataattgatagaagaggaaataaaggtaatgaaattaa |
15265564 |
T |
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| Q |
113 |
tgtaattgttacaacatttacgccacatcattttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttatagaaatggagagaagaa |
211 |
Q |
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| T |
15265563 |
tgtaattgttacaacatttacgccacatcattttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttatagaaatggagagaagaa |
15265465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 15257135 - 15256953
Alignment:
| Q |
16 |
atactgaaatagggttttatgatatattaagaaaggctttaaggactacccttagtagcataattgatagaagaggaaataaaggtaatgaaattaatgt |
115 |
Q |
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|||||||||| |||||||||||| |||| |||||||||||||| ||||| |||| ||| ||||||||||| |||||||||||||||| | ||||| |||| |
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| T |
15257135 |
atactgaaattgggttttatgatgtattgagaaaggctttaagaactactcttaatagtataattgataggagaggaaataaaggtagtaaaattgatgt |
15257036 |
T |
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| Q |
116 |
aattgttacaacatttacgccacatcattttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttatagaa |
198 |
Q |
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| T |
15257035 |
actagttacaacattttcaccagctcattttgaaggtgaatgggataaagctggtgcttgtccaaagactaagccttatagaa |
15256953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 15287781 - 15287623
Alignment:
| Q |
41 |
attaagaaaggctttaaggactacccttagtagcataattgatagaagaggaaataaaggtaatgaaattaatgtaattgttacaacatttacgccacat |
140 |
Q |
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| T |
15287781 |
attaagaaaggctttgaggactacccttaatagtataattgagaggaaagttgctaaaggaaatagaatagatgtgattgttaaaacattttcacctgct |
15287682 |
T |
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| Q |
141 |
cattttgaaggtgcttgggataaggctggtgcttgtccaaaaactaagccttatagaaa |
199 |
Q |
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| T |
15287681 |
cattttgaaggtgattgggataaggctggtacttgttcaaagactaagccttatagaaa |
15287623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 15284141 - 15284178
Alignment:
| Q |
45 |
agaaaggctttaaggactacccttagtagcataattga |
82 |
Q |
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| T |
15284141 |
agaaaggctttaaggactacccttaatagcataattga |
15284178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 44248419 - 44248382
Alignment:
| Q |
45 |
agaaaggctttaaggactacccttagtagcataattga |
82 |
Q |
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| T |
44248419 |
agaaaggctttaaggactacccttaatagcataattga |
44248382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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