View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17371_low_16 (Length: 201)

Name: NF17371_low_16
Description: NF17371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17371_low_16
NF17371_low_16
[»] chr2 (14 HSPs)
chr2 (1-191)||(9756071-9756261)
chr2 (1-191)||(9756191-9756381)
chr2 (1-133)||(9755778-9755910)
chr2 (1-135)||(9781318-9781452)
chr2 (1-108)||(9783155-9783262)
chr2 (121-191)||(9755840-9755910)
chr2 (1-106)||(9783238-9783343)
chr2 (1-107)||(9756035-9756141)
chr2 (120-191)||(9756311-9756382)
chr2 (1-88)||(9783406-9783493)
chr2 (120-190)||(9781383-9781453)
chr2 (24-95)||(9783303-9783374)
chr2 (22-100)||(9783325-9783403)
chr2 (8-100)||(9783475-9783567)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9756261 - 9756071
Alignment:
Q  1 ggtggtgtggaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  9756261 ggtggtgttgaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtcgaaggagctaccgtagttggtggtgtagaagggggtg 9756162  T
Q  101 atgaaggagcatcaacagatggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagc 191  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  9756161 atgaaggagcatcaacagatggtggtgtggaatgagttgttgaaggtggtagtgttgtaggatcaatcacaacttgtggtgtcgaaggagc 9756071  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9756381 - 9756191
Alignment:
Q  1 ggtggtgtggaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtg 100  Q
    |||||||||| |||||||||||||||||||||| ||||||||| |||||  ||||||||||| ||||||||||||| | |||||||||| ||||||||||    
T  9756381 ggtggtgtggtaggaggtgttgaaggtggtggtatcgtaggattaaccacggatggtggtgtcgaaggagctaccgcaattggtggtgtggaagggggtg 9756282  T
Q  101 atgaaggagcatcaacagatggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagc 191  Q
     ||||||| ||| ||| | ||||||||| ||||||| ||||||||||||| |||| ||||||||||||| |  ||||||||||||||||||    
T  9756281 ttgaaggatcatgaacgggtggtggtgttgaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtcgaaggagc 9756191  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 9755910 - 9755778
Alignment:
Q  1 ggtggtgtggaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtg 100  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||||  |  ||||| ||| ||||||||||||||| |||||||||| ||||||||||    
T  9755910 ggtggtgtggatggaggtgttgaaggtggtagtgtcgttggatcaaccgcaactggtgatgtcgaaggagctaccgtaattggtggtgtggaagggggtg 9755811  T
Q  101 atgaaggagcatcaacagatggtggtgtggaag 133  Q
     |||||||||  | |||| ||||||||||||||    
T  9755810 ttgaaggagcgaccacaggtggtggtgtggaag 9755778  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 9781452 - 9781318
Alignment:
Q  1 ggtggtgtggaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtg 100  Q
    |||||||||||||||||||| ||||||||||||||   ||||||||||| || |||| |||| ||||||| |||| || |||||||||| ||||||||||    
T  9781452 ggtggtgtggaaggaggtgtcgaaggtggtggtgtgaaaggatcaaccacaggtggttgtgtcgaaggagataccataattggtggtgtggaagggggtg 9781353  T
Q  101 atgaaggagcatcaacagatggtggtgtggaagga 135  Q
     ||||||||||| ||| | |||||||  |||||||    
T  9781352 ttgaaggagcatgaacgggtggtggtagggaagga 9781318  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 9783262 - 9783155
Alignment:
Q  1 ggtggtgtggaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtg 100  Q
    |||||||||||| | |||||||||| ||||||||| | |||||||||||  | ||||||||| |||||||||||| || |||||||||| ||||| ||||    
T  9783262 ggtggtgtggaaaggggtgttgaagatggtggtgtggaaggatcaaccacgggtggtggtgttgaaggagctaccataattggtggtgtggaaggaggtg 9783163  T
Q  101 atgaagga 108  Q
     |||||||    
T  9783162 ttgaagga 9783155  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 9755910 - 9755840
Alignment:
Q  121 ggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagc 191  Q
    ||||||||||| |||| |||||||||||||||||| || ||||||||| ||||||||| ||||||||||||    
T  9755910 ggtggtgtggatggaggtgttgaaggtggtagtgtcgttggatcaaccgcaactggtgatgtcgaaggagc 9755840  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 9783343 - 9783238
Alignment:
Q  1 ggtggtgtggaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtg 100  Q
    ||||| |||||||||||||| |||| ||||||||| | |||||||||||  | |||| |||| | |||||| ||| ||||||||||||| ||| ||||||    
T  9783343 ggtggggtggaaggaggtgtcgaagttggtggtgtggaaggatcaaccatgggtggttgtgtcgtaggagcaaccatagttggtggtgtggaaaggggtg 9783244  T
Q  101 atgaag 106  Q
     |||||    
T  9783243 ttgaag 9783238  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9756141 - 9756035
Alignment:
Q  1 ggtggtgtggaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtg 100  Q
    |||||||||||| ||| ||||||||||||| |||| |||||||||| || |  | ||||||| |||||||||| ||  |||||||| || ||||| ||||    
T  9756141 ggtggtgtggaatgagttgttgaaggtggtagtgttgtaggatcaatcacaacttgtggtgtcgaaggagctatcgcggttggtggcgtggaaggaggtg 9756042  T
Q  101 atgaagg 107  Q
     ||||||    
T  9756041 ttgaagg 9756035  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 9756382 - 9756311
Alignment:
Q  120 tggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggagc 191  Q
    ||||||||||| ||||| ||||||||||||| || | ||||||| ||||||   ||||||||||||||||||    
T  9756382 tggtggtgtggtaggaggtgttgaaggtggtggtatcgtaggattaaccacggatggtggtgtcgaaggagc 9756311  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 9783493 - 9783406
Alignment:
Q  1 ggtggtgtggaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtg 88  Q
    ||||| |||||||||||||| ||| |||||||||| | |||||||||||  | | |||||||  ||||||||||| || |||||||||    
T  9783493 ggtggggtggaaggaggtgtcgaaagtggtggtgtggaaggatcaaccatgggtcgtggtgtcaaaggagctaccataattggtggtg 9783406  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 9781453 - 9781383
Alignment:
Q  120 tggtggtgtggaaggagttgttgaaggtggtagtgttgtaggatcaaccacaactggtggtgtcgaaggag 190  Q
    ||||||||||||||||| ||| ||||||||| ||||   |||||||||||||  |||| ||||||||||||    
T  9781453 tggtggtgtggaaggaggtgtcgaaggtggtggtgtgaaaggatcaaccacaggtggttgtgtcgaaggag 9781383  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 9783374 - 9783303
Alignment:
Q  24 aggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagg 95  Q
    |||||||||||||| |||| |||||| || |||||| |||||||||| |  || |||||||||||| |||||    
T  9783374 aggtggtggtgtcgaaggagcaaccatagttggtggggtggaaggaggtgtcgaagttggtggtgtggaagg 9783303  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 9783403 - 9783325
Alignment:
Q  22 gaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtg 100  Q
    ||||| ||| |||| | ||||||||||| || ||||||||| |||||||| ||| |||||||||| || ||||| ||||    
T  9783403 gaaggaggtcgtgtggaaggatcaaccacaggtggtggtgtcgaaggagcaaccatagttggtggggtggaaggaggtg 9783325  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 9783567 - 9783475
Alignment:
Q  8 tggaaggaggtgttgaaggtggtggtgtcgtaggatcaaccaaagatggtggtgtggaaggagctaccgtagttggtggtgtcgaagggggtg 100  Q
    |||||||||||||||||||| ||||| ||  |||||||||||  |  |||| ||| ||||||||||   |||||||||| || ||||| ||||    
T  9783567 tggaaggaggtgttgaaggtagtggtttcaaaggatcaaccatgggaggtgctgttgaaggagctattatagttggtggggtggaaggaggtg 9783475  T

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