View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17371_low_17 (Length: 201)
Name: NF17371_low_17
Description: NF17371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17371_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32844864 - 32844664
Alignment:
| Q |
1 |
acctatcaggtgagagacgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaaaacaatacttgcaaacatacacgac |
100 |
Q |
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| T |
32844864 |
acctatcaggtgagagacgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaagccagcaaaacaatacttgcaaacatacacaac |
32844765 |
T |
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| Q |
101 |
gctgaaagccacaaagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggc |
200 |
Q |
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| T |
32844764 |
gctgaaagccacaaagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggc |
32844665 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
32844664 |
t |
32844664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 8e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 27745184 - 27744987
Alignment:
| Q |
1 |
acctatcaggtgagagacgaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaaaacaatacttgcaaacatacacgac |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| | ||||||| ||| ||||| ||||||||||||| |||||| | |
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| T |
27745184 |
acctatcaggtgagagacgaacgagggatcctgaggccgtgcgatgcaaggcccacatatggaaaatgcctgcaaagcaatacttgcaaagatacacaat |
27745085 |
T |
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| Q |
101 |
gctgaaagccacaaagcataagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttag |
198 |
Q |
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| T |
27745084 |
gctgaaagccacaaagcataggatgaggacggtgagggtgaaggctactagtgccggtggggtcttatgtgctggagccggtggggggtcgtacttag |
27744987 |
T |
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