View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17371_low_3 (Length: 280)
Name: NF17371_low_3
Description: NF17371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17371_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 37212692 - 37212947
Alignment:
| Q |
9 |
gagaagaaggaagggaaaccatcggcagaggcggcggtggtttgaagctgatcggaaggtggaggcggcggtggtgaggctggtggacggtagattgaga |
108 |
Q |
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| T |
37212692 |
gagaagaaggaagggaaaccatcggcagagacggcggtggtttgaggctgatcggaaggtggaggcggcggtggtgaggctggtggacggtagattgaga |
37212791 |
T |
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| Q |
109 |
tctgagagagggagttgagacggtgagatctggcggttatctttgagtcgcggaggcgagctagggttcctggtttcaggaatttgtggaagttgtttgg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
37212792 |
tctgagagagggagttgagacggtgagatctggcggttatctttgagtcgcggaggcgagctagggttcctggtttgaggaatttgtggaagtggtttgg |
37212891 |
T |
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| Q |
209 |
taaagtaggtcttgttctctgcttcatggtgatggaagaaagagagaattgggaga |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37212892 |
taaagtaggtcttgttctctgcttcatggtgatggaagaaagagagaattgggaga |
37212947 |
T |
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